Rroxscaffold_4G00306500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000385
Physical Location & Seq
Reverse (-)
27361934 .. 27362735
802 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00306500.1

Sequence Viewer

Length: 744 bp
ATGGGGGGAGAGAGATTGGCTTCGATACCCGACGGGGTAGAGGATGTGAGCCTCCGTACCCAATGGGGTGGAGGGATCTTGGCGTCGATACCCGATGGGGTAGAGGATGTGAGCCTCCGGTACCCGATGGGGGTAGAGGGCTTGGCGTCGATACCCGATGGGGTAGGGGATGTGAGCCTCCCGTACCCAATGGGGTGGAGGGATCTTGGCGTCGATACCCGATGGGGTAGAGGATGTGAGCCTCCGGTACCCAATGGGGTGGAGGGATCTTGGCGTCGATACCGATGGGGTAGAAGATGTGAGTCTCCCAGTACCCAATGGGGTGGAGGGCTTGGCGTCGATACCGATGGGGTAGAGGATGTGAGCCTCCGGCACCCAATGGGGTGGAGGGATCTTGGCGTCGATACCCGATGGGGTAGAGGATGTGAGCCTCCGGTACCCAATGGGGTAGAGGGATCTTGGCGTCGATACCGATGGAGTAGAGGATGTGAGTCTCCCAGCACCCAATGGGGTGGAGGATTTGGCGTCGATACCCGATGGGGTAGAGGATGTGAGCCTCCGGTACCCAATGGGGTGGAGGGCTTGGCGTCGATACCCGATGGGGTAGAAGATGTGCGTCTCCGTACCCAATGGGGTGGAGGGCTTGGCGTCGATACCCGATGGGGTAGAGGATGTGAGCCTCCGTACCCAATGGGGTGGAGGGATCTTGGCGTCGATACCGATGGGGTAGAGGATAGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

247

Amino Acids

26.88

Weight (kDa)

4.74

Isoelectric Point (pI)

43.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 4 cut(s) 120, 247, 436, 562
AccB1I GGYRCC 5 cut(s) 120, 247, 372, 436, 562
AclWI GGATC 6 cut(s) 83, 210, 274, 399, 463, 711
AfaI GTAC 9 cut(s) 58, 122, 185, 249, 313, 438, 564, 625, 686
AfiI CCNNNNNNNGG 1 cut(s) 130
Alw26I GTCTC 3 cut(s) 309, 498, 623
AlwI GGATC 6 cut(s) 83, 210, 274, 399, 463, 711
Asp718I GGTACC 4 cut(s) 120, 247, 436, 562
BanI GGYRCC 5 cut(s) 120, 247, 372, 436, 562
BcoDI GTCTC 3 cut(s) 309, 498, 623
BmiI GGNNCC 5 cut(s) 122, 249, 374, 438, 564
BmrI ACTGGG 1 cut(s) 303
BmuI ACTGGG 1 cut(s) 303
BsaWI WCCGGW 4 cut(s) 117, 244, 433, 559
Bsc4I CCNNNNNNNGG 1 cut(s) 130
Bse1I ACTGG 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 130
BseNI ACTGG 1 cut(s) 309
BseYI CCCAGC 1 cut(s) 497
BshNI GGYRCC 5 cut(s) 120, 247, 372, 436, 562
BsiSI CCGG 5 cut(s) 118, 245, 370, 434, 560
BslI CCNNNNNNNGG 1 cut(s) 130
BsmAI GTCTC 3 cut(s) 309, 498, 623
BsmBI CGTCTC 1 cut(s) 623
Bsp143I GATC 6 cut(s) 75, 202, 266, 391, 455, 703
BspLI GGNNCC 5 cut(s) 122, 249, 374, 438, 564
BspPI GGATC 6 cut(s) 83, 210, 274, 399, 463, 711
BspT107I GGYRCC 5 cut(s) 120, 247, 372, 436, 562
BsrI ACTGG 1 cut(s) 309
BssMI GATC 6 cut(s) 75, 202, 266, 391, 455, 703
BstKTI GATC 6 cut(s) 78, 205, 269, 394, 458, 706
BstMAI GTCTC 3 cut(s) 309, 498, 623
BstMBI GATC 6 cut(s) 75, 202, 266, 391, 455, 703
BstX2I RGATCY 6 cut(s) 75, 202, 266, 391, 455, 703
BstXI CCANNNNNNTGG 9 cut(s) 68, 195, 259, 323, 384, 512, 574, 635, 696
BstYI RGATCY 6 cut(s) 75, 202, 266, 391, 455, 703
Csp6I GTAC 9 cut(s) 57, 121, 184, 248, 312, 437, 563, 624, 685
CviQI GTAC 9 cut(s) 57, 121, 184, 248, 312, 437, 563, 624, 685
DpnI GATC 6 cut(s) 77, 204, 268, 393, 457, 705
DpnII GATC 6 cut(s) 75, 202, 266, 391, 455, 703
Esp3I CGTCTC 1 cut(s) 623
FokI GGATG 9 cut(s) 56, 119, 182, 246, 371, 435, 498, 561, 684
GsaI CCCAGC 1 cut(s) 501
HapII CCGG 5 cut(s) 118, 245, 370, 434, 560
HinfI GANTC 2 cut(s) 302, 491
HpaII CCGG 5 cut(s) 118, 245, 370, 434, 560
KpnI GGTACC 4 cut(s) 124, 251, 440, 566
Kzo9I GATC 6 cut(s) 75, 202, 266, 391, 455, 703
LpnPI CCDG 7 cut(s) 131, 258, 322, 383, 447, 511, 573
MalI GATC 6 cut(s) 77, 204, 268, 393, 457, 705
MboI GATC 6 cut(s) 75, 202, 266, 391, 455, 703
MboII GAAGA 2 cut(s) 306, 620
MflI RGATCY 6 cut(s) 75, 202, 266, 391, 455, 703
MlyI GAGTC 2 cut(s) 311, 500
MspI CCGG 5 cut(s) 118, 245, 370, 434, 560
NdeII GATC 6 cut(s) 75, 202, 266, 391, 455, 703
NlaIV GGNNCC 5 cut(s) 122, 249, 374, 438, 564
PleI GAGTC 2 cut(s) 310, 499
PpsI GAGTC 2 cut(s) 310, 499
PspFI CCCAGC 1 cut(s) 497
PspN4I GGNNCC 5 cut(s) 122, 249, 374, 438, 564
PsuI RGATCY 6 cut(s) 75, 202, 266, 391, 455, 703
RsaI GTAC 9 cut(s) 58, 122, 185, 249, 313, 438, 564, 625, 686
RsaNI GTAC 9 cut(s) 57, 121, 184, 248, 312, 437, 563, 624, 685
Sau3AI GATC 6 cut(s) 75, 202, 266, 391, 455, 703
SchI GAGTC 2 cut(s) 311, 500
TspGWI ACGGA 3 cut(s) 44, 611, 672
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.