RchiOBHm_Chr6g0251961

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000385
Physical Location & Seq
Forward (+)
7204083 .. 7204968
886 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22588

Sequence Viewer

Length: 318 bp
ATGACAGGCAAGATGACAAACCAACAAAGATTCGATTGGTATGACCGGCAACTCGGAGAACTTGCGGTGGTGCCCGATAGGTTGATTGATATCACTAATGTGTTGGACCGCGTCGACCTAGATGAGTTGGCGGCGCGGATGATAGAGGTGGAGAGCCTAAAGGACCGAGTTATGGCCCTTGAAAAATGTAAAGCTCGAGGAAGCAGAAGGGAGAGAAATGAGGAAGAAACTCTCGTTCCGAACGAGCAGATGGGGGCAATGAGTGATGCCCTCGACACACTCCAGGTGACGGTGGACAATATGGCAGAAGATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

12.06

Weight (kDa)

4.45

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 70
AccI GTMKAC 1 cut(s) 114
AccII CGCG 2 cut(s) 111, 136
AciI CCGC 4 cut(s) 65, 109, 131, 136
AfiI CCNNNNNNNGG 2 cut(s) 172, 289
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 282
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Ama87I CYCGRG 1 cut(s) 195
AoxI GGCC 1 cut(s) 174
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 3 cut(s) 106, 163, 175
AsuHPI GGTGA 1 cut(s) 298
AvaI CYCGRG 1 cut(s) 195
AvaII GGWCC 2 cut(s) 106, 163
BaeGI GKGCMC 1 cut(s) 75
BanI GGYRCC 1 cut(s) 70
BccI CCATC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 284
BfaI CTAG 1 cut(s) 119
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 284
Bme18I GGWCC 2 cut(s) 106, 163
BmeT110I CYCGRG 1 cut(s) 195
BmgT120I GGNCC 3 cut(s) 106, 163, 175
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 1 cut(s) 284
BmsI GCATC 1 cut(s) 256
BpmI CTGGAG 1 cut(s) 266
BsaBI GATNNNNATC 1 cut(s) 89
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 289
Bse118I RCCGGY 1 cut(s) 45
Bse3DI GCAATG 1 cut(s) 264
Bse8I GATNNNNATC 1 cut(s) 89
BseBI CCWGG 1 cut(s) 284
BseGI GGATG 1 cut(s) 144
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 2 cut(s) 172, 289
BseMI GCAATG 1 cut(s) 264
BseSI GKGCMC 1 cut(s) 75
Bsh1236I CGCG 2 cut(s) 111, 136
BshFI GGCC 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 195
BsiSI CCGG 1 cut(s) 46
BslI CCNNNNNNNGG 2 cut(s) 172, 289
BsnI GGCC 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 75
BspACI CCGC 4 cut(s) 65, 109, 131, 136
BspANI GGCC 1 cut(s) 176
BspFNI CGCG 2 cut(s) 111, 136
BspLI GGNNCC 1 cut(s) 72
BspT107I GGYRCC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 264
BsrFI RCCGGY 1 cut(s) 45
BssAI RCCGGY 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 292
BstF5I GGATG 1 cut(s) 144
BstFNI CGCG 2 cut(s) 111, 136
BstHHI GCGC 1 cut(s) 136
BstNI CCWGG 1 cut(s) 284
BstSCI CCNGG 1 cut(s) 282
BstSLI GKGCMC 1 cut(s) 75
BstUI CGCG 2 cut(s) 111, 136
BsuRI GGCC 1 cut(s) 176
BtsCI GGATG 1 cut(s) 144
CfoI GCGC 1 cut(s) 136
Cfr10I RCCGGY 1 cut(s) 45
Cfr13I GGNCC 3 cut(s) 106, 163, 175
CseI GACGC 1 cut(s) 100
CviJI RGCY 3 cut(s) 156, 176, 194
CviKI_1 RGCY 3 cut(s) 156, 176, 194
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 106, 163
Eco88I CYCGRG 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 282
EcoRV GATATC 1 cut(s) 91
FaiI YATR 3 cut(s) 42, 173, 302
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 132
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 119
GlaI GCGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 132
GsuI CTGGAG 1 cut(s) 266
HaeIII GGCC 1 cut(s) 176
HapII CCGG 1 cut(s) 46
HgaI GACGC 1 cut(s) 100
HhaI GCGC 1 cut(s) 136
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HinfI GANTC 1 cut(s) 30
HpaII CCGG 1 cut(s) 46
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 2 cut(s) 115, 295
Hpy188I TCNGA 3 cut(s) 56, 240, 317
Hpy8I GTNNAC 2 cut(s) 115, 295
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 1 cut(s) 292
HspAI GCGC 1 cut(s) 134
LpnPI CCDG 3 cut(s) 59, 269, 296
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 119
MaeIII GTNAC 1 cut(s) 286
MboII GAAGA 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 4 cut(s) 139, 191, 214, 281
MslI CAYNNNNRTG 1 cut(s) 98
MspI CCGG 1 cut(s) 46
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
MvnI CGCG 2 cut(s) 111, 136
NlaIV GGNNCC 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 286
OliI CACNNNNGTG 1 cut(s) 98
PaeR7I CTCGAG 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PfeI GAWTC 1 cut(s) 30
PflFI GACNNNGTC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 133
Psp6I CCWGG 1 cut(s) 282
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 3 cut(s) 106, 163, 175
PspXI VCTCGAGB 1 cut(s) 195
PsyI GACNNNGTC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 98
SalI GTCGAC 1 cut(s) 113
SatI GCNGC 1 cut(s) 132
Sau96I GGNCC 3 cut(s) 106, 163, 175
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 1 cut(s) 75
SetI ASST 5 cut(s) 83, 120, 150, 196, 288
SfaNI GCATC 1 cut(s) 256
Sfr274I CTCGAG 1 cut(s) 195
SinI GGWCC 2 cut(s) 106, 163
SlaI CTCGAG 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
SsiI CCGC 4 cut(s) 65, 109, 131, 136
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 292
TaqI TCGA 4 cut(s) 33, 114, 196, 273
TaqII GACCGA 1 cut(s) 180
TauI GCSGC 1 cut(s) 134
TfiI GAWTC 1 cut(s) 30
TseFI GTSAC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 286
Tth111I GACNNNGTC 1 cut(s) 110
VpaK11BI GGWCC 2 cut(s) 106, 163
XhoI CTCGAG 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.