Rmu_ssc0000396.1_g000022

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000396.1
OG0000385
Physical Location & Seq
Forward (+)
92615 .. 92959
345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000396.1_g000022.1.cds

Sequence Viewer

Length: 345 bp
atggcgggtggcaatgatactttgaaggagagagtggcaagggtagaggaaattcttggcatgccgatcgaagaagtagaggcaagcttaattgttcaagtggaaaaattgaatcaagaactagcatcaatgtgtgttgcattcgatggccacgtgcatgagatggaagagaggatggagacgtccaaccatgagatggaagccctttcgcaagaggcggaggcaaagtctgaggttcttgatgccgacattggattgctaaagcacgctagcatcaatgaaggtgggacaagacaagaggtggtgttcccaagatcaaggtaccggaaccaaagtcattcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

12.75

Weight (kDa)

4.73

Isoelectric Point (pI)

44.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 185
Acc65I GGTACC 1 cut(s) 321
AccB1I GGYRCC 1 cut(s) 321
AccB7I CCANNNNNTGG 1 cut(s) 196
AciI CCGC 2 cut(s) 5, 218
AcoI YGGCCR 1 cut(s) 148
AcsI RAATTY 1 cut(s) 51
AcvI CACGTG 1 cut(s) 154
AcyI GRCGYC 1 cut(s) 182
AfaI GTAC 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 3 cut(s) 25, 98, 112
AluBI AGCT 1 cut(s) 87
AluI AGCT 1 cut(s) 87
Alw26I GTCTC 1 cut(s) 173
AoxI GGCC 1 cut(s) 148
ApoI RAATTY 1 cut(s) 51
Asp718I GGTACC 1 cut(s) 321
AsuNHI GCTAGC 1 cut(s) 269
BalI TGGCCA 1 cut(s) 150
BanI GGYRCC 1 cut(s) 321
BbrPI CACGTG 1 cut(s) 154
BccI CCATC 4 cut(s) 140, 157, 169, 190
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 2 cut(s) 122, 270
BmiI GGNNCC 2 cut(s) 323, 329
BmsI GCATC 3 cut(s) 134, 232, 282
BmtI GCTAGC 1 cut(s) 273
BsaAI YACGTR 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 182
BsaWI WCCGGW 1 cut(s) 324
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse3DI GCAATG 1 cut(s) 19
BseGI GGATG 1 cut(s) 180
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 1 cut(s) 222
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 1 cut(s) 150
BshNI GGYRCC 1 cut(s) 321
BsiEI CGRYCG 1 cut(s) 69
BsiSI CCGG 1 cut(s) 325
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 1 cut(s) 173
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 301
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 1 cut(s) 150
Bsp143I GATC 2 cut(s) 66, 314
BspACI CCGC 2 cut(s) 5, 218
BspANI GGCC 1 cut(s) 150
BspCNI CTCAG 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 323, 329
BspOI GCTAGC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 321
BsrDI GCAATG 1 cut(s) 19
BssMI GATC 2 cut(s) 66, 314
BssNI GRCGYC 1 cut(s) 182
Bst6I CTCTTC 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 182
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 4 cut(s) 62, 85, 267, 271
BstDEI CTNAG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 180
BstKTI GATC 2 cut(s) 69, 317
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 2 cut(s) 66, 314
BstMCI CGRYCG 1 cut(s) 69
BstNSI RCATGY 1 cut(s) 64
BsuRI GGCC 1 cut(s) 150
BtsCI GGATG 1 cut(s) 180
Cac8I GCNNGC 4 cut(s) 62, 85, 267, 271
Csp6I GTAC 1 cut(s) 322
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 3 cut(s) 61, 158, 191
CviJI RGCY 3 cut(s) 87, 150, 203
CviKI_1 RGCY 3 cut(s) 87, 150, 203
CviQI GTAC 1 cut(s) 322
DdeI CTNAG 1 cut(s) 231
DpnI GATC 2 cut(s) 68, 316
DpnII GATC 2 cut(s) 66, 314
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
EciI GGCGGA 1 cut(s) 233
Eco72I CACGTG 1 cut(s) 154
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 3 cut(s) 64, 161, 194
FaiI YATR 3 cut(s) 62, 159, 192
FaqI GGGAC 1 cut(s) 301
FatI CATG 3 cut(s) 60, 157, 190
FokI GGATG 1 cut(s) 187
FspBI CTAG 2 cut(s) 122, 270
HaeIII GGCC 1 cut(s) 150
HapII CCGG 1 cut(s) 325
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 3 cut(s) 64, 161, 194
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 1 cut(s) 112
HpaII CCGG 1 cut(s) 325
Hpy188I TCNGA 1 cut(s) 232
Hpy188III TCNNGA 2 cut(s) 116, 239
HpyAV CCTTC 2 cut(s) 19, 275
HpyCH4IV ACGT 2 cut(s) 153, 182
HpyCH4V TGCA 2 cut(s) 140, 157
HpyF3I CTNAG 1 cut(s) 231
HpySE526I ACGT 2 cut(s) 153, 182
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 3 cut(s) 64, 161, 194
KpnI GGTACC 1 cut(s) 325
Kzo9I GATC 2 cut(s) 66, 314
LpnPI CCDG 1 cut(s) 338
LweI GCATC 3 cut(s) 134, 232, 282
MaeI CTAG 2 cut(s) 122, 270
MaeII ACGT 2 cut(s) 153, 182
MalI GATC 2 cut(s) 68, 316
MboI GATC 2 cut(s) 66, 314
MboII GAAGA 2 cut(s) 83, 179
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 3 cut(s) 51, 90, 107
MluNI TGGCCA 1 cut(s) 150
MmeI TCCRAC 1 cut(s) 210
MnlI CCTC 7 cut(s) 40, 73, 165, 208, 214, 226, 292
Mox20I TGGCCA 1 cut(s) 150
MscI TGGCCA 1 cut(s) 150
MseI TTAA 1 cut(s) 89
MslI CAYNNNNRTG 2 cut(s) 130, 156
Msp20I TGGCCA 1 cut(s) 150
MspI CCGG 1 cut(s) 325
Mva1269I GAATGC 1 cut(s) 140
NdeII GATC 2 cut(s) 66, 314
NheI GCTAGC 1 cut(s) 269
NlaIII CATG 3 cut(s) 64, 161, 194
NlaIV GGNNCC 2 cut(s) 323, 329
NspI RCATGY 1 cut(s) 64
PaeI GCATGC 1 cut(s) 64
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 1 cut(s) 140
PfeI GAWTC 1 cut(s) 112
PflMI CCANNNNNTGG 1 cut(s) 196
Ple19I CGATCG 1 cut(s) 69
PmaCI CACGTG 1 cut(s) 154
PmlI CACGTG 1 cut(s) 154
Ppu21I YACGTR 1 cut(s) 154
PspCI CACGTG 1 cut(s) 154
PspN4I GGNNCC 2 cut(s) 323, 329
PvuI CGATCG 1 cut(s) 69
RsaI GTAC 1 cut(s) 323
RsaNI GTAC 1 cut(s) 322
RseI CAYNNNNRTG 2 cut(s) 130, 156
SaqAI TTAA 1 cut(s) 89
Sau3AI GATC 2 cut(s) 66, 314
SetI ASST 7 cut(s) 89, 156, 185, 237, 286, 303, 323
SfaNI GCATC 3 cut(s) 134, 232, 282
SmiMI CAYNNNNRTG 2 cut(s) 130, 156
SphI GCATGC 1 cut(s) 64
Sse9I AATT 3 cut(s) 51, 90, 107
SsiI CCGC 2 cut(s) 5, 218
SspMI CTAG 2 cut(s) 122, 270
TaiI ACGT 2 cut(s) 156, 185
TaqI TCGA 2 cut(s) 69, 144
TasI AATT 3 cut(s) 51, 90, 107
TfiI GAWTC 1 cut(s) 112
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 294
Van91I CCANNNNNTGG 1 cut(s) 196
XapI RAATTY 1 cut(s) 51
XceI RCATGY 1 cut(s) 64
XcmI CCANNNNNNNNNTGG 1 cut(s) 193
XspI CTAG 2 cut(s) 122, 270
ZraI GACGTC 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.