Rh7BG000200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000385
Physical Location & Seq
Reverse (-)
7020 .. 8053
1034 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG000200.1

Sequence Viewer

Length: 534 bp
ATGGCGGGTGGCAATGATACTTTGAAGGAGAGAGTGGCAAGGGTAGAGAAAATCCTTGGCATGCCGATCGAAGAAGTAGAGGCAAGCTTAATTGTTCAAGTGGAACAATTGAAGCAAGAACTAGCATCAATGCGTGTTGCATTCGATGGCCACGTGCATGAGATGGAAGAGAGGATAGAGACGTCCATTTATGAGATAGAAGCCCTTTTGCAAGAGGCGGAGGCAAAGTTTGAGGTTCTTGATGCCGACATTGGATTGCTAAAGCGCGCTAGCATCAATGAAGAACGCATGTCAGATTTAAAGGGGGCTACCAGCATGCATGCAGGGGCAGTCAGCGTGCATGGGGGCACCATGGGCCTGCCTGAGAGTGTCCTAGGCCTACTTGGGGGTGCTGCCAGCACACATGCATGGTATGCAGGTCTGAAAAATAAGAGCTTGACAAGTGGCAGAGGTAGTTTGCAGCAGCCCAAGGCAGTTACAGGCAGTTATTCCTCAAAGAAAACTGCCATAACTGCCCATGGAACTGCCACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

18.85

Weight (kDa)

5.53

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 185
Acc36I ACCTGC 1 cut(s) 407
AccB1I GGYRCC 1 cut(s) 347
AccII CGCG 1 cut(s) 267
AciI CCGC 2 cut(s) 5, 218
AcoI YGGCCR 1 cut(s) 148
AcvI CACGTG 1 cut(s) 154
AcyI GRCGYC 1 cut(s) 182
AfiI CCNNNNNNNGG 1 cut(s) 385
AgsI TTSAA 3 cut(s) 25, 98, 112
AluBI AGCT 2 cut(s) 87, 435
AluI AGCT 2 cut(s) 87, 435
Alw26I GTCTC 1 cut(s) 173
AoxI GGCC 3 cut(s) 148, 355, 376
ApeKI GCWGC 3 cut(s) 392, 460, 463
AspA2I CCTAGG 1 cut(s) 373
AspLEI GCGC 2 cut(s) 267, 269
AspS9I GGNCC 1 cut(s) 355
AsuNHI GCTAGC 1 cut(s) 269
AvrII CCTAGG 1 cut(s) 373
BaeGI GKGCMC 1 cut(s) 350
BalI TGGCCA 1 cut(s) 150
BanI GGYRCC 1 cut(s) 347
BbrPI CACGTG 1 cut(s) 154
BbvI GCAGC 3 cut(s) 379, 472, 475
BccI CCATC 2 cut(s) 140, 157
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BcoDI GTCTC 1 cut(s) 173
BfaI CTAG 3 cut(s) 122, 270, 374
BfuAI ACCTGC 1 cut(s) 407
BisI GCNGC 3 cut(s) 393, 461, 464
BlnI CCTAGG 1 cut(s) 373
BlsI GCNGC 3 cut(s) 394, 462, 465
BmgT120I GGNCC 1 cut(s) 355
BmiI GGNNCC 1 cut(s) 349
BmsI GCATC 3 cut(s) 134, 232, 282
BmtI GCTAGC 1 cut(s) 273
BsaAI YACGTR 1 cut(s) 154
BsaHI GRCGYC 1 cut(s) 182
BsaJI CCNNGG 5 cut(s) 55, 351, 373, 468, 517
BsaXI ACNNNNNCTCC 2 cut(s) 212, 242
Bsc4I CCNNNNNNNGG 1 cut(s) 385
Bse3DI GCAATG 1 cut(s) 19
BseDI CCNNGG 5 cut(s) 55, 351, 373, 468, 517
BseLI CCNNNNNNNGG 1 cut(s) 385
BseMI GCAATG 1 cut(s) 19
BseMII CTCAG 1 cut(s) 354
BsePI GCGCGC 1 cut(s) 265
BseSI GKGCMC 1 cut(s) 350
BseXI GCAGC 3 cut(s) 379, 472, 475
Bsh1236I CGCG 1 cut(s) 267
Bsh1285I CGRYCG 1 cut(s) 69
BshFI GGCC 3 cut(s) 150, 357, 378
BshNI GGYRCC 1 cut(s) 347
BsiEI CGRYCG 1 cut(s) 69
BslI CCNNNNNNNGG 1 cut(s) 385
BsmAI GTCTC 1 cut(s) 173
BsmBI CGTCTC 1 cut(s) 173
BsmI GAATGC 1 cut(s) 140
BsnI GGCC 3 cut(s) 150, 357, 378
Bsp1286I GDGCHC 1 cut(s) 350
Bsp143I GATC 1 cut(s) 66
Bsp19I CCATGG 2 cut(s) 351, 517
BspACI CCGC 2 cut(s) 5, 218
BspANI GGCC 3 cut(s) 150, 357, 378
BspCNI CTCAG 1 cut(s) 355
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 349
BspMI ACCTGC 1 cut(s) 407
BspOI GCTAGC 1 cut(s) 273
BspT107I GGYRCC 1 cut(s) 347
BsrDI GCAATG 1 cut(s) 19
BssECI CCNNGG 5 cut(s) 55, 351, 373, 468, 517
BssHII GCGCGC 1 cut(s) 265
BssMI GATC 1 cut(s) 66
BssNI GRCGYC 1 cut(s) 182
BssT1I CCWWGG 5 cut(s) 55, 351, 373, 468, 517
Bst6I CTCTTC 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 182
BstAPI GCANNNNNTGC 1 cut(s) 413
BstBAI YACGTR 1 cut(s) 154
BstC8I GCNNGC 9 cut(s) 62, 85, 267, 271, 317, 321, 338, 359, 397
BstDEI CTNAG 1 cut(s) 363
BstDSI CCRYGG 2 cut(s) 351, 517
BstFNI CGCG 1 cut(s) 267
BstHHI GCGC 2 cut(s) 267, 269
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 173
BstMBI GATC 1 cut(s) 66
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 3 cut(s) 354, 413, 512
BstNSI RCATGY 5 cut(s) 64, 292, 319, 323, 407
BstSLI GKGCMC 1 cut(s) 350
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 3 cut(s) 379, 472, 475
BsuRI GGCC 3 cut(s) 150, 357, 378
BtgI CCRYGG 2 cut(s) 351, 517
BveI ACCTGC 1 cut(s) 407
Cac8I GCNNGC 9 cut(s) 62, 85, 267, 271, 317, 321, 338, 359, 397
CfoI GCGC 2 cut(s) 267, 269
Cfr13I GGNCC 1 cut(s) 355
CviJI RGCY 8 cut(s) 87, 150, 203, 308, 357, 378, 435, 466
CviKI_1 RGCY 8 cut(s) 87, 150, 203, 308, 357, 378, 435, 466
DdeI CTNAG 1 cut(s) 363
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
DraI TTTAAA 1 cut(s) 300
EaeI YGGCCR 1 cut(s) 148
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
EciI GGCGGA 1 cut(s) 233
Eco130I CCWWGG 5 cut(s) 55, 351, 373, 468, 517
Eco147I AGGCCT 1 cut(s) 378
Eco72I CACGTG 1 cut(s) 154
EcoT14I CCWWGG 5 cut(s) 55, 351, 373, 468, 517
EcoT22I ATGCAT 2 cut(s) 321, 409
ErhI CCWWGG 5 cut(s) 55, 351, 373, 468, 517
Esp3I CGTCTC 1 cut(s) 173
Fnu4HI GCNGC 3 cut(s) 393, 461, 464
Fsp4HI GCNGC 3 cut(s) 393, 461, 464
FspBI CTAG 3 cut(s) 122, 270, 374
GlaI GCGC 2 cut(s) 266, 268
GluI GCNGC 3 cut(s) 393, 461, 464
HaeIII GGCC 3 cut(s) 150, 357, 378
HhaI GCGC 2 cut(s) 267, 269
Hin1I GRCGYC 1 cut(s) 182
Hin6I GCGC 2 cut(s) 265, 267
HinP1I GCGC 2 cut(s) 265, 267
HindIII AAGCTT 1 cut(s) 85
Hpy188I TCNGA 2 cut(s) 295, 423
Hpy188III TCNNGA 1 cut(s) 239
HpyAV CCTTC 1 cut(s) 19
HpyCH4IV ACGT 2 cut(s) 153, 182
HpyCH4V TGCA 9 cut(s) 140, 157, 211, 319, 323, 340, 407, 416, 460
HpyF10VI GCNNNNNNNGC 3 cut(s) 354, 413, 512
HpyF3I CTNAG 1 cut(s) 363
HpySE526I ACGT 2 cut(s) 153, 182
Hsp92I GRCGYC 1 cut(s) 182
HspAI GCGC 2 cut(s) 265, 267
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 7 cut(s) 309, 325, 371, 375, 402, 409, 465
Lsp1109I GCAGC 3 cut(s) 379, 472, 475
LweI GCATC 3 cut(s) 134, 232, 282
MaeI CTAG 3 cut(s) 122, 270, 374
MaeII ACGT 2 cut(s) 153, 182
MaeIII GTNAC 1 cut(s) 475
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 3 cut(s) 83, 179, 293
MfeI CAATTG 1 cut(s) 107
MhlI GDGCHC 1 cut(s) 350
MlsI TGGCCA 1 cut(s) 150
MluCI AATT 2 cut(s) 90, 107
MluNI TGGCCA 1 cut(s) 150
MnlI CCTC 7 cut(s) 73, 165, 208, 214, 226, 443, 502
Mox20I TGGCCA 1 cut(s) 150
Mph1103I ATGCAT 2 cut(s) 321, 409
MscI TGGCCA 1 cut(s) 150
MseI TTAA 3 cut(s) 89, 299, 532
MslI CAYNNNNRTG 2 cut(s) 156, 406
Msp20I TGGCCA 1 cut(s) 150
MunI CAATTG 1 cut(s) 107
Mva1269I GAATGC 1 cut(s) 140
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 3 cut(s) 354, 413, 512
NcoI CCATGG 2 cut(s) 351, 517
NdeII GATC 1 cut(s) 66
NheI GCTAGC 1 cut(s) 269
NlaIV GGNNCC 1 cut(s) 349
NsiI ATGCAT 2 cut(s) 321, 409
NspI RCATGY 5 cut(s) 64, 292, 319, 323, 407
PaeI GCATGC 3 cut(s) 64, 319, 323
PauI GCGCGC 1 cut(s) 265
PceI AGGCCT 1 cut(s) 378
PcsI WCGNNNNNNNCGW 1 cut(s) 150
PctI GAATGC 1 cut(s) 140
PkrI GCNGC 3 cut(s) 394, 462, 465
Ple19I CGATCG 1 cut(s) 69
PmaCI CACGTG 1 cut(s) 154
PmlI CACGTG 1 cut(s) 154
Ppu21I YACGTR 1 cut(s) 154
PspCI CACGTG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 349
PspPI GGNCC 1 cut(s) 355
PteI GCGCGC 1 cut(s) 265
PvuI CGATCG 1 cut(s) 69
RseI CAYNNNNRTG 2 cut(s) 156, 406
SaqAI TTAA 3 cut(s) 89, 299, 532
SatI GCNGC 3 cut(s) 393, 461, 464
Sau3AI GATC 1 cut(s) 66
Sau96I GGNCC 1 cut(s) 355
SduI GDGCHC 1 cut(s) 350
SetI ASST 7 cut(s) 89, 156, 185, 237, 421, 437, 454
SfaNI GCATC 3 cut(s) 134, 232, 282
SmiMI CAYNNNNRTG 2 cut(s) 156, 406
SphI GCATGC 3 cut(s) 64, 319, 323
Sse9I AATT 2 cut(s) 90, 107
SseBI AGGCCT 1 cut(s) 378
SsiI CCGC 2 cut(s) 5, 218
SspMI CTAG 3 cut(s) 122, 270, 374
StuI AGGCCT 1 cut(s) 378
StyI CCWWGG 5 cut(s) 55, 351, 373, 468, 517
TaiI ACGT 2 cut(s) 156, 185
TaqI TCGA 2 cut(s) 69, 144
TasI AATT 2 cut(s) 90, 107
Tru1I TTAA 3 cut(s) 89, 299, 532
Tru9I TTAA 3 cut(s) 89, 299, 532
TseI GCWGC 3 cut(s) 392, 460, 463
TspDTI ATGAA 1 cut(s) 294
XceI RCATGY 5 cut(s) 64, 292, 319, 323, 407
XmaJI CCTAGG 1 cut(s) 373
XspI CTAG 3 cut(s) 122, 270, 374
ZraI GACGTC 1 cut(s) 183
Zsp2I ATGCAT 2 cut(s) 321, 409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.