FvH4_4g34281
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000385
Physical Location & Seq
Forward (+)
32157885 .. 32163833
5949 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g34281.t1

Sequence Viewer

Length: 2067 bp
ATGGCAAGGGGAGGATCCAAGGTGACGCTAGTTGAGGGAGAGCAACACGATGCTGGGGAATCAGCATTGGCTGCCGGCACTCCTCATGTGGTTGAGCAACTAGTCGGACGCGAAGAGGCAAGCGAGCCGGAGGTTTCGAAGAAGAAACACTTGAAGGATGTCATAGCCGATATCGACTCACGACTATCCGAGGTGGAGGGGTTCGTGAGTGGCATGGAGACCCGAGTGGAGGAACTAGACCAAAGAGCGGATGGTCTAGAGGAGGAGGACAACGTCATCCACGTCGCGATGAAGAGCATGACCATTAAGTTCGAGGATGCCTTGCGGGAGGAGGTTGCCAAGATTCGCGAGGAGTTCATGGGGGAACTCGCGACTATGCGACAAGTCCACGAGAGGGAAATGCAAAACGCCCTTGCACGCATGGAGGAGATGCGCGAGGACTTAAACCTTTGCAAGAGGGCAGTAGCGTCGGGTGGTCCAAGCACGAGTGGTGCTGCCATGGAGGTAAGGCGTGTGGAAGTGCCGAAACCTAAGTCCTTTGGAGGCGCACGCAACGCACGAGAAGTTGATAACTTCTTATGGGGGCTGGATCAATATTTCGGAGCCGTGGGCATCGCGGAGGAGGACGCCAAGATCAAGAGCGCAGCTCTATACCTCACCGACACCGCCATGCTATGGTGGCGAAGGAAGAAGGGAGATATTGAAAAAGGTACGTGCACCATCACAACCTTTGACGATTTCACTAAGGAGCTTAAGAAACAATTTTATCCCGAGAATGCCGAGGAAGAAGCAAGGGCTCGTCTTCGACGGCTCAAGCAAACGAGCACCATCCGCGACTATATAAAGGAGTTCACAACCTTGGTGCTCGAAATCCCCGATATGTCCGATAAAGACGCCCTTTTCTACTTCATGGATGGTCTCCAACCATGGGCTAAGACCGAGCTACGACGTCGTGGGGTGCAAGACCTTGCGAGCGCCATAGCCGCGGCCGACGCCCTAATCGACTACTCAAATCCGAGGGAGTCCGTGAGCAAACCAAAAGAAAAGAAGGGTGGCTATGTCAAAGGTGGGGGAGACAAAAGCCAACGTAAAGAGGAGCCGCGACGACTTAAGGCCTCGGGATGGAACAAAGACAAGGGCAAGACCGAGGAAACAAAGGGGGCGAAGCGACCGAACGACAACAAGTGCTTCCTATGTGATGGGCCGCATTGGGCGAGGGATTGCCCACAAAGAAAAGCTCTAAGTGCACTCTTGGGGAGTCGTCAAGGTGATGAGAAAGCCGAGGGCGGCAATGGTGCACACATGGGGTCGTTGCAAATGCTCAATGCAATCCGATCCACGCCCAAGACTCAATCGAAGGGGCTGCCCTTCGTAGACATCCAAGTCGATGGGAAGCCCGCGCGAGCCTTGCTCGACACGGGGGCGACTCACAACTTCATTCCTAGTACAAACGAGTATAAGGTTGTGGCAACCCATGATATCGAAGGTGTAGTAGGGTTTAAGATTTTCACACTAGGTCAAGCTTCATGGAGGAACATAATGGTAGACTGGCATCACCTGTCATTTGTTCGTCCTCCACCTTCAGACTTTTGCAGGTTGGCTACTAGTCATGAAGCTATATTGGCTCTTGACATTGGAGATGAGAGGTTCACATTCATACCAGTACCTTCTCAATGCAAATTGAACAATAAATACAAAAAGATTATCGAAGTTGATGGATGTCTCGGTATAGTATGTGGGGATTACGGTATTGATGTGAATAATGTGATTGTTTTGTGGATTTTGACGGACTACAAACATCAAGTGTGGGTTGCGGAGACTATCAAAGTTAATCGCTATGGACCCTATCGACTACGTTTTCGTAGTTCTTACTTGCCTCAGTGTACCGCCCACACAGGTGAGCTTGTGTTTGAAGTTACTAAAGACAATTATCTTCAATTATATGACAGGAAAAGTAAAAGCTTTCGGCAGAGTAAAATCATTTTTCCCGAGATATTGCGTGATTTGGGATTGAGACTATGTTATTCCGCTGTTAGTTTTGATGATTGTGCTGCTCCCTTAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Chromo RVT_1 Retrotrans_gag gag-asp_proteas

Protein Analysis

689

Amino Acids

77.32

Weight (kDa)

6.74

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 175 - 342 1.8e-13 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 214 - 309 3.5e-18 Retrotransposon gag protein
FBA_3 PF08268 483 - 660 5.2e-16 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1382
AatII GACGTC 1 cut(s) 952
Acc36I ACCTGC 1 cut(s) 1584
AccB7I CCANNNNNTGG 1 cut(s) 675
AccBSI CCGCTC 1 cut(s) 248
AccI GTMKAC 2 cut(s) 1374, 1545
AclWI GGATC 4 cut(s) 9, 22, 597, 1329
AcoI YGGCCR 1 cut(s) 987
AcuI CTGAAG 1 cut(s) 1566
AcyI GRCGYC 4 cut(s) 627, 894, 949, 993
AfaI GTAC 4 cut(s) 712, 1447, 1665, 1885
AfiI CCNNNNNNNGG 6 cut(s) 229, 247, 394, 675, 928, 1122
AflII CTTAAG 2 cut(s) 752, 1109
AgsI TTSAA 5 cut(s) 154, 704, 1684, 1913, 1937
AhlI ACTAGT 2 cut(s) 100, 1604
AjiI CACGTC 1 cut(s) 283
AleI CACNNNNGTG 1 cut(s) 1896
AluBI AGCT 8 cut(s) 647, 751, 943, 1238, 1523, 1616, 1903, 1962
AluI AGCT 8 cut(s) 647, 751, 943, 1238, 1523, 1616, 1903, 1962
Alw21I GWGCWC 5 cut(s) 719, 827, 867, 1249, 1300
Alw26I GTCTC 6 cut(s) 212, 923, 1068, 1727, 1811, 2008
Alw44I GTGCAC 3 cut(s) 715, 1245, 1296
AlwI GGATC 4 cut(s) 9, 22, 597, 1329
Ama87I CYCGRG 4 cut(s) 222, 770, 1117, 1988
AoxI GGCC 3 cut(s) 987, 1113, 1202
ApaLI GTGCAC 3 cut(s) 715, 1245, 1296
ApeKI GCWGC 5 cut(s) 71, 494, 644, 1363, 2051
ArsI GACNNNNNNTTYG 4 cut(s) 518, 550, 1842, 1874
AspLEI GCGC 5 cut(s) 435, 548, 644, 977, 1402
AspS9I GGNCC 3 cut(s) 476, 1202, 1841
AsuHPI GGTGA 5 cut(s) 34, 649, 1280, 1547, 1910
AsuII TTCGAA 1 cut(s) 137
AvaI CYCGRG 4 cut(s) 222, 770, 1117, 1988
AvaII GGWCC 2 cut(s) 476, 1841
BaeGI GKGCMC 3 cut(s) 719, 1249, 1300
BamHI GGATCC 1 cut(s) 14
BanII GRGCYC 1 cut(s) 799
BauI CACGAG 3 cut(s) 389, 484, 558
BbsI GAAGAC 1 cut(s) 794
Bbv12I GWGCWC 5 cut(s) 719, 827, 867, 1249, 1300
BbvI GCAGC 5 cut(s) 58, 481, 656, 1350, 2038
BccI CCATC 8 cut(s) 245, 728, 836, 908, 1116, 1193, 1382, 1709
BceAI ACGGC 2 cut(s) 590, 824
BcgI CGANNNNNNTGC 4 cut(s) 450, 484, 1345, 1379
BcoDI GTCTC 6 cut(s) 212, 923, 1068, 1727, 1811, 2008
BcuI ACTAGT 2 cut(s) 100, 1604
BfaI CTAG 7 cut(s) 29, 101, 236, 257, 1443, 1514, 1605
BfoI RGCGCY 1 cut(s) 978
BfrI CTTAAG 2 cut(s) 752, 1109
BfuAI ACCTGC 1 cut(s) 1584
Bme18I GGWCC 2 cut(s) 476, 1841
BmeT110I CYCGRG 4 cut(s) 222, 770, 1117, 1988
BmgBI CACGTC 1 cut(s) 283
BmgT120I GGNCC 3 cut(s) 476, 1202, 1841
BmiI GGNNCC 4 cut(s) 16, 604, 1098, 1843
BmsI GCATC 5 cut(s) 40, 307, 420, 621, 1561
BpiI GAAGAC 1 cut(s) 794
BplI GAGNNNNNCTC 4 cut(s) 631, 663, 1395, 1427
Bpu14I TTCGAA 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 797
BsaAI YACGTR 1 cut(s) 714
BsaHI GRCGYC 4 cut(s) 627, 894, 949, 993
BsaI GGTCTC 2 cut(s) 212, 923
Bsc4I CCNNNNNNNGG 6 cut(s) 229, 247, 394, 675, 928, 1122
Bse118I RCCGGY 1 cut(s) 74
Bse1I ACTGG 2 cut(s) 1553, 1661
Bse3DI GCAATG 1 cut(s) 1297
BseGI GGATG 9 cut(s) 163, 256, 276, 322, 828, 919, 1127, 1377, 1724
BseLI CCNNNNNNNGG 6 cut(s) 229, 247, 394, 675, 928, 1122
BseMI GCAATG 1 cut(s) 1297
BseMII CTCAG 1 cut(s) 1892
BseNI ACTGG 2 cut(s) 1553, 1661
BseRI GAGGAG 8 cut(s) 72, 275, 278, 344, 365, 440, 635, 1109
BseSI GKGCMC 3 cut(s) 719, 1249, 1300
BseX3I CGGCCG 1 cut(s) 987
BseXI GCAGC 5 cut(s) 58, 481, 656, 1350, 2038
BseYI CCCAGC 1 cut(s) 53
Bsh1285I CGRYCG 2 cut(s) 990, 1172
BshFI GGCC 3 cut(s) 989, 1115, 1204
BsiEI CGRYCG 2 cut(s) 990, 1172
BsiHKAI GWGCWC 5 cut(s) 719, 827, 867, 1249, 1300
BsiHKCI CYCGRG 4 cut(s) 222, 770, 1117, 1988
BsiSI CCGG 2 cut(s) 75, 128
BslI CCNNNNNNNGG 6 cut(s) 229, 247, 394, 675, 928, 1122
BsmAI GTCTC 6 cut(s) 212, 923, 1068, 1727, 1811, 2008
BsmI GAATGC 1 cut(s) 781
BsnI GGCC 3 cut(s) 989, 1115, 1204
Bso31I GGTCTC 2 cut(s) 212, 923
BsoBI CYCGRG 4 cut(s) 222, 770, 1117, 1988
Bsp119I TTCGAA 1 cut(s) 137
Bsp1286I GDGCHC 6 cut(s) 719, 799, 827, 867, 1249, 1300
Bsp143I GATC 4 cut(s) 14, 589, 633, 1334
Bsp19I CCATGG 2 cut(s) 498, 926
Bsp68I TCGCGA 3 cut(s) 287, 348, 371
BspANI GGCC 3 cut(s) 989, 1115, 1204
BspCNI CTCAG 1 cut(s) 1891
BspHI TCATGA 1 cut(s) 1609
BspLI GGNNCC 4 cut(s) 16, 604, 1098, 1843
BspMI ACCTGC 1 cut(s) 1584
BspPI GGATC 4 cut(s) 9, 22, 597, 1329
BspQI GCTCTTC 1 cut(s) 287
BspT104I TTCGAA 1 cut(s) 137
BspTI CTTAAG 2 cut(s) 752, 1109
BspTNI GGTCTC 2 cut(s) 212, 923
BsrBI CCGCTC 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 1297
BsrFI RCCGGY 1 cut(s) 74
BsrI ACTGG 2 cut(s) 1553, 1661
BssAI RCCGGY 1 cut(s) 74
BssMI GATC 4 cut(s) 14, 589, 633, 1334
BssNI GRCGYC 4 cut(s) 627, 894, 949, 993
BssSI CACGAG 3 cut(s) 389, 484, 558
BssT1I CCWWGG 4 cut(s) 18, 498, 858, 926
Bst2BI CACGAG 3 cut(s) 389, 484, 558
Bst4CI ACNGT 1 cut(s) 1748
Bst6I CTCTTC 2 cut(s) 108, 287
BstACI GRCGYC 4 cut(s) 627, 894, 949, 993
BstAFI CTTAAG 2 cut(s) 752, 1109
BstAPI GCANNNNNTGC 1 cut(s) 71
BstBAI YACGTR 1 cut(s) 714
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 8 cut(s) 76, 121, 125, 418, 550, 973, 1398, 1404
BstDEI CTNAG 5 cut(s) 531, 744, 933, 1241, 1878
BstDSI CCRYGG 4 cut(s) 498, 606, 926, 984
BstF5I GGATG 9 cut(s) 163, 256, 276, 322, 828, 919, 1127, 1377, 1724
BstH2I RGCGCY 1 cut(s) 978
BstHHI GCGC 5 cut(s) 435, 548, 644, 977, 1402
BstKTI GATC 4 cut(s) 17, 592, 636, 1337
BstMAI GTCTC 6 cut(s) 212, 923, 1068, 1727, 1811, 2008
BstMBI GATC 4 cut(s) 14, 589, 633, 1334
BstMCI CGRYCG 2 cut(s) 990, 1172
BstMWI GCNNNNNNNGC 9 cut(s) 71, 554, 679, 831, 983, 992, 1244, 1408, 1622
BstSLI GKGCMC 3 cut(s) 719, 1249, 1300
BstV1I GCAGC 5 cut(s) 58, 481, 656, 1350, 2038
BstV2I GAAGAC 1 cut(s) 794
BstX2I RGATCY 1 cut(s) 14
BstXI CCANNNNNNTGG 1 cut(s) 1388
BstYI RGATCY 1 cut(s) 14
BstZI CGGCCG 1 cut(s) 987
BsuRI GGCC 3 cut(s) 989, 1115, 1204
BtgI CCRYGG 4 cut(s) 498, 606, 926, 984
BtgZI GCGATG 2 cut(s) 302, 598
BtrI CACGTC 1 cut(s) 283
BtsCI GGATG 9 cut(s) 163, 256, 276, 322, 828, 919, 1127, 1377, 1724
BtsIMutI CAGTG 1 cut(s) 1886
BtuMI TCGCGA 3 cut(s) 287, 348, 371
BveI ACCTGC 1 cut(s) 1584
Cac8I GCNNGC 8 cut(s) 76, 121, 125, 418, 550, 973, 1398, 1404
CciI TCATGA 1 cut(s) 1609
CfoI GCGC 5 cut(s) 435, 548, 644, 977, 1402
Cfr10I RCCGGY 1 cut(s) 74
Cfr13I GGNCC 3 cut(s) 476, 1202, 1841
Cfr42I CCGCGG 1 cut(s) 987
CseI GACGC 6 cut(s) 34, 117, 456, 635, 902, 1001
Csp6I GTAC 4 cut(s) 711, 1446, 1664, 1884
CviQI GTAC 4 cut(s) 711, 1446, 1664, 1884
DdeI CTNAG 5 cut(s) 531, 744, 933, 1241, 1878
DpnI GATC 4 cut(s) 16, 591, 635, 1336
DpnII GATC 4 cut(s) 14, 589, 633, 1334
DrdI GACNNNNNNGTC 1 cut(s) 1382
DseDI GACNNNNNNGTC 1 cut(s) 1382
EaeI YGGCCR 1 cut(s) 987
EagI CGGCCG 1 cut(s) 987
Eam1104I CTCTTC 2 cut(s) 108, 287
EarI CTCTTC 2 cut(s) 108, 287
EclXI CGGCCG 1 cut(s) 987
Eco130I CCWWGG 4 cut(s) 18, 498, 858, 926
Eco147I AGGCCT 1 cut(s) 1115
Eco24I GRGCYC 1 cut(s) 799
Eco31I GGTCTC 2 cut(s) 212, 923
Eco32I GATATC 2 cut(s) 172, 1480
Eco47I GGWCC 2 cut(s) 476, 1841
Eco52I CGGCCG 1 cut(s) 987
Eco57I CTGAAG 1 cut(s) 1566
Eco88I CYCGRG 4 cut(s) 222, 770, 1117, 1988
EcoRV GATATC 2 cut(s) 172, 1480
EcoT14I CCWWGG 4 cut(s) 18, 498, 858, 926
EcoT38I GRGCYC 1 cut(s) 799
ErhI CCWWGG 4 cut(s) 18, 498, 858, 926
FalI AAGNNNNNCTT 4 cut(s) 134, 166, 882, 914
FauI CCCGC 2 cut(s) 318, 1405
FblI GTMKAC 2 cut(s) 1374, 1545
FokI GGATG 9 cut(s) 170, 263, 263, 329, 815, 926, 1134, 1364, 1731
FriOI GRGCYC 1 cut(s) 799
FspBI CTAG 7 cut(s) 29, 101, 236, 257, 1443, 1514, 1605
GlaI GCGC 5 cut(s) 434, 547, 643, 976, 1401
GsaI CCCAGC 1 cut(s) 57
HaeII RGCGCY 1 cut(s) 978
HaeIII GGCC 3 cut(s) 989, 1115, 1204
HapII CCGG 2 cut(s) 75, 128
HgaI GACGC 6 cut(s) 34, 117, 456, 635, 902, 1001
HhaI GCGC 5 cut(s) 435, 548, 644, 977, 1402
Hin1I GRCGYC 4 cut(s) 627, 894, 949, 993
Hin6I GCGC 5 cut(s) 433, 546, 642, 975, 1400
HinP1I GCGC 5 cut(s) 433, 546, 642, 975, 1400
HindIII AAGCTT 2 cut(s) 1521, 1960
HinfI GANTC 7 cut(s) 59, 176, 343, 1022, 1258, 1348, 1426
HpaII CCGG 2 cut(s) 75, 128
HphI GGTGA 5 cut(s) 34, 649, 1280, 1547, 1910
Hpy166II GTNNAC 9 cut(s) 388, 717, 852, 1247, 1298, 1375, 1546, 1650, 1884
Hpy188I TCNGA 7 cut(s) 107, 190, 602, 886, 1017, 1334, 1585
Hpy8I GTNNAC 9 cut(s) 388, 717, 852, 1247, 1298, 1375, 1546, 1650, 1884
Hpy99I CGWCG 7 cut(s) 287, 472, 810, 951, 954, 995, 1107
HpyAV CCTTC 9 cut(s) 148, 678, 685, 1042, 1351, 1378, 1478, 1590, 1677
HpyCH4III ACNGT 1 cut(s) 1748
HpyCH4IV ACGT 6 cut(s) 273, 282, 713, 949, 1087, 1855
HpyF10VI GCNNNNNNNGC 9 cut(s) 71, 554, 679, 831, 983, 992, 1244, 1408, 1622
HpyF3I CTNAG 5 cut(s) 531, 744, 933, 1241, 1878
HpySE526I ACGT 6 cut(s) 273, 282, 713, 949, 1087, 1855
Hsp92I GRCGYC 4 cut(s) 627, 894, 949, 993
HspAI GCGC 5 cut(s) 433, 546, 642, 975, 1400
KroI GCCGGC 1 cut(s) 74
KroNI GCCGGC 1 cut(s) 76
KspI CCGCGG 1 cut(s) 987
Kzo9I GATC 4 cut(s) 14, 589, 633, 1334
LguI GCTCTTC 1 cut(s) 287
LmnI GCTCC 4 cut(s) 602, 748, 1096, 2059
Lsp1109I GCAGC 5 cut(s) 58, 481, 656, 1350, 2038
LweI GCATC 5 cut(s) 40, 307, 420, 621, 1561
MaeI CTAG 7 cut(s) 29, 101, 236, 257, 1443, 1514, 1605
MaeII ACGT 6 cut(s) 273, 282, 713, 949, 1087, 1855
MaeIII GTNAC 2 cut(s) 22, 1915
MalI GATC 4 cut(s) 16, 591, 635, 1336
MbiI CCGCTC 1 cut(s) 248
MboI GATC 4 cut(s) 14, 589, 633, 1334
MboII GAAGA 8 cut(s) 125, 151, 154, 304, 700, 794, 797, 1925
MflI RGATCY 1 cut(s) 14
MhlI GDGCHC 6 cut(s) 719, 799, 827, 867, 1249, 1300
MluCI AATT 4 cut(s) 761, 1679, 1927, 1937
MlyI GAGTC 5 cut(s) 170, 1031, 1267, 1342, 1420
MmeI TCCRAC 2 cut(s) 85, 946
MroNI GCCGGC 1 cut(s) 74
MseI TTAA 7 cut(s) 306, 443, 753, 1110, 1500, 1830, 2060
MslI CAYNNNNRTG 2 cut(s) 668, 1896
MspA1I CMGCKG 2 cut(s) 986, 2030
MspCI CTTAAG 2 cut(s) 752, 1109
MspI CCGG 2 cut(s) 75, 128
Mva1269I GAATGC 1 cut(s) 781
MwoI GCNNNNNNNGC 9 cut(s) 71, 554, 679, 831, 983, 992, 1244, 1408, 1622
NaeI GCCGGC 1 cut(s) 76
NcoI CCATGG 2 cut(s) 498, 926
NdeII GATC 4 cut(s) 14, 589, 633, 1334
NgoMIV GCCGGC 1 cut(s) 74
NlaIV GGNNCC 4 cut(s) 16, 604, 1098, 1843
NmeAIII GCCGAG 2 cut(s) 805, 1306
NmuCI GTSAC 1 cut(s) 22
NruI TCGCGA 3 cut(s) 287, 348, 371
NspV TTCGAA 1 cut(s) 137
OliI CACNNNNGTG 1 cut(s) 1896
PagI TCATGA 1 cut(s) 1609
PceI AGGCCT 1 cut(s) 1115
PciSI GCTCTTC 1 cut(s) 287
PcsI WCGNNNNNNNCGW 4 cut(s) 279, 556, 873, 999
PctI GAATGC 1 cut(s) 781
PdiI GCCGGC 1 cut(s) 76
PfeI GAWTC 2 cut(s) 59, 343
PflFI GACNNNGTC 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 675
PleI GAGTC 5 cut(s) 170, 1030, 1266, 1342, 1420
PpsI GAGTC 5 cut(s) 170, 1030, 1266, 1342, 1420
Ppu21I YACGTR 1 cut(s) 714
PspFI CCCAGC 1 cut(s) 53
PspN4I GGNNCC 4 cut(s) 16, 604, 1098, 1843
PspPI GGNCC 3 cut(s) 476, 1202, 1841
PsrI GAACNNNNNNTAC 2 cut(s) 1676, 1708
PsuI RGATCY 1 cut(s) 14
PsyI GACNNNGTC 1 cut(s) 272
RruI TCGCGA 3 cut(s) 287, 348, 371
RsaI GTAC 4 cut(s) 712, 1447, 1665, 1885
RsaNI GTAC 4 cut(s) 711, 1446, 1664, 1884
RseI CAYNNNNRTG 2 cut(s) 668, 1896
SacII CCGCGG 1 cut(s) 987
SapI GCTCTTC 1 cut(s) 287
SaqAI TTAA 7 cut(s) 306, 443, 753, 1110, 1500, 1830, 2060
Sau3AI GATC 4 cut(s) 14, 589, 633, 1334
Sau96I GGNCC 3 cut(s) 476, 1202, 1841
SchI GAGTC 5 cut(s) 170, 1031, 1267, 1342, 1420
SduI GDGCHC 6 cut(s) 719, 799, 827, 867, 1249, 1300
SfaNI GCATC 5 cut(s) 40, 307, 420, 621, 1561
Sfr303I CCGCGG 1 cut(s) 987
SfuI TTCGAA 1 cut(s) 137
SgrBI CCGCGG 1 cut(s) 987
SinI GGWCC 2 cut(s) 476, 1841
SmiMI CAYNNNNRTG 2 cut(s) 668, 1896
SmlI CTYRAG 3 cut(s) 752, 812, 1109
SmoI CTYRAG 3 cut(s) 752, 812, 1109
SpeI ACTAGT 2 cut(s) 100, 1604
Sse9I AATT 4 cut(s) 761, 1679, 1927, 1937
SseBI AGGCCT 1 cut(s) 1115
SspI AATATT 1 cut(s) 596
SspMI CTAG 7 cut(s) 29, 101, 236, 257, 1443, 1514, 1605
StuI AGGCCT 1 cut(s) 1115
StyI CCWWGG 4 cut(s) 18, 498, 858, 926
TaaI ACNGT 1 cut(s) 1748
TaiI ACGT 6 cut(s) 276, 285, 716, 952, 1090, 1858
TaqII GACCGA 3 cut(s) 953, 1160, 1186
TasI AATT 4 cut(s) 761, 1679, 1927, 1937
TatI WGTACW 1 cut(s) 1445
TauI GCSGC 5 cut(s) 986, 989, 1102, 1207, 1290
TfiI GAWTC 2 cut(s) 59, 343
Tru1I TTAA 7 cut(s) 306, 443, 753, 1110, 1500, 1830, 2060
Tru9I TTAA 7 cut(s) 306, 443, 753, 1110, 1500, 1830, 2060
TscAI CASTG 1 cut(s) 1886
TseFI GTSAC 1 cut(s) 22
TseI GCWGC 5 cut(s) 71, 494, 644, 1363, 2051
Tsp45I GTSAC 1 cut(s) 22
TspDTI ATGAA 7 cut(s) 305, 346, 898, 1426, 1515, 1626, 1645
TspGWI ACGGA 2 cut(s) 1015, 1802
TspRI CASTG 1 cut(s) 1886
Tth111I GACNNNGTC 1 cut(s) 272
Van91I CCANNNNNTGG 1 cut(s) 675
Vha464I CTTAAG 2 cut(s) 752, 1109
VneI GTGCAC 3 cut(s) 715, 1245, 1296
VpaK11BI GGWCC 2 cut(s) 476, 1841
XbaI TCTAGA 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 248
XmiI GTMKAC 2 cut(s) 1374, 1545
XspI CTAG 7 cut(s) 29, 101, 236, 257, 1443, 1514, 1605
ZraI GACGTC 1 cut(s) 950
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.