FvH4_c7g00010

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
contig_7
OG0000385
Physical Location & Seq
Forward (+)
17747 .. 20370
2624 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_c7g00010.t1

Sequence Viewer

Length: 1893 bp
ATGTCCGGAGAAGGAGTTTCGGTGGAGCAAGCTGTTGTTGGCGCCAAGAGGAGCCACAAGGAAGTACTTGCTGCCTTTGATGCACGGCTCGGAAAGGTGGAATCGGCCGTGGTCGAGTTTGACACTCGACTTGACGATGACGTCGTGACAAAGGGGGATCTCGCAGCCATGGTGGAAGAGTTGCGAGAGCAAATGCACGGCGCTCTCAACATTATGGCAGATAGGATCCGAGGGGAGGTCCGAGACAAGCTTGATCAAATGTCCGCTGAGCTCACAGCCCTCCGAGAGGAAGTGAAGGAGGTCAAGGGAGATTGGGCGCTATGCAAAGAGGCTGCACTTAACAAGTCGCAAGGGCCAAAGGAGACGAAGGCATTGGACTCTTTCAAACCCAAATCCTTTAGTGGGAAGAGGGAAGCTAAAGAGCTTGACACCTTTCTATGGAACATGGAAAGGTACTTCAAGTATCTAAAGCTTGAGGATGACGAGTCCAAAATTTCAACGGCTACCATGTTCCTAGCCGACAATGCCCTTATGTGGTGGCGTCGAAGGAGTATGGAAATCGAGCAAGGTACGTTCTCTCTCGATACTTGGGAAGAATTCAAGAACGACATCAAGTTGCATTTCTATCCCCAAAATGCTCAATATGAAGCCAAGGAGAAGCTTAGGTGGCTAAAGCAAACGGGTAGCGTCAAGGATTATGTCAACACCTTTGTTAACTTGCTATTCGAAGTGCCCAACATGACGGAGGAGGACAAGCTCATTTACTTCATGAGTGGATTACAAAGTTGGGCAAAGCTTGAGTTGCAAAGAAGACAAGTGCAAACCTTGTCACAAGCCATTGCCGCCGCCGAGTCCCTTATTGAGTTCAAAGCTAGCCACCAAGGCGACACTAAGTTCAAGGGGAAGAAGGTTAGCTATGAGAAGAGTGGGGGAGACGTGCCAAAGCCAAAGGAGAAGCCCGAGTCAAGCTACAAGCCGAAGGTGAAGAGGTTCGAGAAGCACGACAAGTCCGCAAACAAGACTTGGGAAATGAAGTGCTACTTATGCGACGGCCCTCACATGATGCGCGACTGTCCTCAAAAGAAAGCCCTCAAAGCCATGACCTTGCAAGAGTCTAGGATCGAGGAAGAGGAAGACGATGCGTCAAGGATGGGATGCATCCGGTTGCTCAATGCCGTGAAGGCTAGCGTCCCTCAACCAAGGCAACAAGCGAAAGGTGGATCGCTTTACATCGATGTCAAGGCAAAAGACACGATGGTTCGTGCCTTGGTGGATTGCGGAGCAACTCATAACTTCATGACGTCGGAAGAAGCAAGGAAGCTTGGCCTCCGAGTCACGAAGGAGTCGGGCAGTGTGAAGACGGTGAATACACCTGCCACGCCCATTGTTGGGGTAGCACGCGATGTGGAGGTTCACATCGGCGCTTGGAAGGGGAAAGTCGACTTCACCGTGGTCAAGATGGACGACTATGGCGTGGTAATCGGCCTTGAATTCATGGACAAGGTACGAGCATTCCCCATTCCATTCTATAACATCTTTTGCATTGTTGCGGATGGAGAATTGCCTTGCGTGGTGCCCGTGGCAAGGCAAGCAAGGGAGAAGACAAAGGCTCTATCCGCCATGCAACTCGCTAAAGCTTGGAAGAAGGGCGAGCCGACATTCCTAGCAACCCTCAAGATGGATGAGGAGGTTGGAGGAAAGTCCGAACCATTGCCAAAAGCAATAGAGGCAATCCTTGAGGAGTTTGGAGATGTAATGCCCAAGGAGTTGCCGAAGAGGCCACAAGATCAAGGATGGAAAGCTCTTGATGGAGGAAAGCAAGGTGAAGGCCATCCAAGATTGGGAGCCGCCAACCAAGGTACCCGCACTTCGATCTTTCCTTGGCTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

631

Amino Acids

70.96

Weight (kDa)

8.16

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 129 - 290 1.2e-13 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 168 - 261 3.1e-15 Retrotransposon gag protein
Asp_protease PF09668 407 - 503 4.4e-07 Aspartyl protease
gag-asp_proteas PF13975 411 - 500 9.9e-10 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 412 - 498 1.2e-08 Aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1381
AasI GACNNNNNNGTC 1 cut(s) 140
AatII GACGTC 2 cut(s) 144, 1304
Acc36I ACCTGC 1 cut(s) 1381
Acc65I GGTACC 1 cut(s) 1859
AccB1I GGYRCC 3 cut(s) 41, 1573, 1859
AccI GTMKAC 1 cut(s) 1440
AccII CGCG 2 cut(s) 1068, 1401
AccIII TCCGGA 1 cut(s) 5
AciI CCGC 9 cut(s) 264, 843, 846, 1011, 1278, 1550, 1617, 1848, 1864
AclWI GGATC 5 cut(s) 165, 220, 233, 1127, 1228
AcoI YGGCCR 1 cut(s) 105
AcsI RAATTY 3 cut(s) 492, 596, 1490
AcyI GRCGYC 4 cut(s) 42, 141, 541, 1301
AfaI GTAC 5 cut(s) 66, 455, 571, 1506, 1861
AgsI TTSAA 7 cut(s) 385, 460, 498, 601, 868, 898, 1490
AhdI GACNNNNNGTC 1 cut(s) 1141
AjiI CACGTC 1 cut(s) 937
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 3 cut(s) 237, 356, 927
AlwI GGATC 5 cut(s) 165, 220, 233, 1127, 1228
Ama87I CYCGRG 1 cut(s) 959
Aor13HI TCCGGA 1 cut(s) 5
AoxI GGCC 7 cut(s) 105, 353, 1051, 1324, 1483, 1778, 1828
ApeKI GCWGC 3 cut(s) 71, 164, 332
ApoI RAATTY 3 cut(s) 492, 596, 1490
Asp700I GAANNNNTTC 1 cut(s) 989
Asp718I GGTACC 1 cut(s) 1859
AspLEI GCGC 5 cut(s) 44, 203, 319, 1068, 1424
AspS9I GGNCC 3 cut(s) 238, 353, 1052
AsuHPI GGTGA 4 cut(s) 994, 1375, 1438, 1835
AsuII TTCGAA 1 cut(s) 726
AsuNHI GCTAGC 2 cut(s) 872, 1184
AvaI CYCGRG 1 cut(s) 959
AvaII GGWCC 1 cut(s) 238
BaeGI GKGCMC 2 cut(s) 735, 1578
BaeI ACNNNNGTAYC 2 cut(s) 1843, 1876
BamHI GGATCC 1 cut(s) 225
BanI GGYRCC 3 cut(s) 41, 1573, 1859
BanII GRGCYC 1 cut(s) 273
BarI GAAGNNNNNNTAC 2 cut(s) 1852, 1884
BbsI GAAGAC 4 cut(s) 817, 1140, 1364, 1607
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 3 cut(s) 58, 176, 319
BccI CCATC 8 cut(s) 1144, 1249, 1453, 1547, 1672, 1788, 1802, 1839
BceAI ACGGC 6 cut(s) 92, 101, 214, 516, 1066, 1160
BclI TGATCA 1 cut(s) 253
BcoDI GTCTC 3 cut(s) 237, 356, 927
BfaI CTAG 5 cut(s) 515, 873, 1116, 1185, 1664
BfoI RGCGCY 4 cut(s) 45, 204, 320, 1425
BfuAI ACCTGC 1 cut(s) 1381
BglI GCCNNNNNGGC 3 cut(s) 882, 1181, 1777
BisI GCNGC 6 cut(s) 72, 165, 333, 843, 846, 1848
BlpI GCTNAGC 1 cut(s) 267
BlsI GCNGC 6 cut(s) 73, 166, 334, 844, 847, 1849
BmcAI AGTACT 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 238
BmeRI GACNNNNNGTC 1 cut(s) 1141
BmeT110I CYCGRG 1 cut(s) 959
BmgBI CACGTC 1 cut(s) 937
BmgT120I GGNCC 3 cut(s) 238, 353, 1052
BmiI GGNNCC 6 cut(s) 43, 53, 227, 1575, 1846, 1861
BmsI GCATC 5 cut(s) 70, 1053, 1129, 1145, 1167
BmtI GCTAGC 2 cut(s) 876, 1188
BpiI GAAGAC 4 cut(s) 817, 1140, 1364, 1607
Bpu10I CCTNAGC 1 cut(s) 662
Bpu1102I GCTNAGC 1 cut(s) 267
Bpu14I TTCGAA 1 cut(s) 726
BpuEI CTTGAG 4 cut(s) 494, 818, 1658, 1757
Bsa29I ATCGAT 1 cut(s) 1233
BsaHI GRCGYC 4 cut(s) 42, 141, 541, 1301
BsaWI WCCGGW 2 cut(s) 5, 1161
BsaXI ACNNNNNCTCC 3 cut(s) 6, 30, 36
Bse3DI GCAATG 2 cut(s) 837, 1709
BseAI TCCGGA 1 cut(s) 5
BseCI ATCGAT 1 cut(s) 1233
BseGI GGATG 8 cut(s) 484, 1155, 1158, 1160, 1558, 1687, 1799, 1831
BseMI GCAATG 2 cut(s) 837, 1709
BseMII CTCAG 1 cut(s) 258
BseRI GAGGAG 4 cut(s) 64, 761, 1700, 1754
BseSI GKGCMC 2 cut(s) 735, 1578
BseX3I CGGCCG 1 cut(s) 105
BseXI GCAGC 3 cut(s) 58, 176, 319
BsgI GTGCAG 1 cut(s) 318
Bsh1236I CGCG 2 cut(s) 1068, 1401
Bsh1285I CGRYCG 1 cut(s) 108
BshFI GGCC 7 cut(s) 107, 355, 1053, 1326, 1485, 1780, 1830
BshNI GGYRCC 3 cut(s) 41, 1573, 1859
BshVI ATCGAT 1 cut(s) 1233
BsiEI CGRYCG 1 cut(s) 108
BsiHKAI GWGCWC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 959
BsiSI CCGG 2 cut(s) 6, 1162
BslFI GGGAC 2 cut(s) 838, 1175
BsmAI GTCTC 3 cut(s) 237, 356, 927
BsmBI CGTCTC 2 cut(s) 356, 927
BsmFI GGGAC 2 cut(s) 838, 1175
BsmI GAATGC 1 cut(s) 1511
BsnI GGCC 7 cut(s) 107, 355, 1053, 1326, 1485, 1780, 1830
BsoBI CYCGRG 1 cut(s) 959
Bsp119I TTCGAA 1 cut(s) 726
Bsp1286I GDGCHC 3 cut(s) 273, 735, 1578
Bsp13I TCCGGA 1 cut(s) 5
Bsp143I GATC 7 cut(s) 157, 225, 253, 1119, 1220, 1786, 1872
Bsp1720I GCTNAGC 1 cut(s) 267
Bsp19I CCATGG 1 cut(s) 168
BspACI CCGC 9 cut(s) 264, 843, 846, 1011, 1278, 1550, 1617, 1848, 1864
BspANI GGCC 7 cut(s) 107, 355, 1053, 1326, 1485, 1780, 1830
BspCNI CTCAG 1 cut(s) 259
BspDI ATCGAT 1 cut(s) 1233
BspEI TCCGGA 1 cut(s) 5
BspFNI CGCG 2 cut(s) 1068, 1401
BspHI TCATGA 2 cut(s) 768, 1296
BspLI GGNNCC 6 cut(s) 43, 53, 227, 1575, 1846, 1861
BspMI ACCTGC 1 cut(s) 1381
BspOI GCTAGC 2 cut(s) 876, 1188
BspPI GGATC 5 cut(s) 165, 220, 233, 1127, 1228
BspT104I TTCGAA 1 cut(s) 726
BspT107I GGYRCC 3 cut(s) 41, 1573, 1859
BsrDI GCAATG 2 cut(s) 837, 1709
BssMI GATC 7 cut(s) 157, 225, 253, 1119, 1220, 1786, 1872
BssNI GRCGYC 4 cut(s) 42, 141, 541, 1301
BssT1I CCWWGG 8 cut(s) 168, 651, 880, 1199, 1266, 1761, 1855, 1880
Bst4CI ACNGT 3 cut(s) 1073, 1363, 1450
Bst6I CTCTTC 6 cut(s) 171, 401, 917, 980, 1122, 1769
BstACI GRCGYC 4 cut(s) 42, 141, 541, 1301
BstBI TTCGAA 1 cut(s) 726
BstC8I GCNNGC 6 cut(s) 30, 874, 1186, 1399, 1590, 1652
BstDEI CTNAG 3 cut(s) 267, 662, 891
BstDSI CCRYGG 4 cut(s) 108, 168, 1449, 1578
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 8 cut(s) 484, 1155, 1158, 1160, 1558, 1687, 1799, 1831
BstFNI CGCG 2 cut(s) 1068, 1401
BstH2I RGCGCY 4 cut(s) 45, 204, 320, 1425
BstHHI GCGC 5 cut(s) 44, 203, 319, 1068, 1424
BstKTI GATC 7 cut(s) 160, 228, 256, 1122, 1223, 1789, 1875
BstMAI GTCTC 3 cut(s) 237, 356, 927
BstMBI GATC 7 cut(s) 157, 225, 253, 1119, 1220, 1786, 1872
BstMCI CGRYCG 1 cut(s) 108
BstSLI GKGCMC 2 cut(s) 735, 1578
BstUI CGCG 2 cut(s) 1068, 1401
BstV1I GCAGC 3 cut(s) 58, 176, 319
BstV2I GAAGAC 4 cut(s) 817, 1140, 1364, 1607
BstX2I RGATCY 2 cut(s) 157, 225
BstYI RGATCY 2 cut(s) 157, 225
BstZI CGGCCG 1 cut(s) 105
Bsu15I ATCGAT 1 cut(s) 1233
BsuRI GGCC 7 cut(s) 107, 355, 1053, 1326, 1485, 1780, 1830
BsuTUI ATCGAT 1 cut(s) 1233
BtgI CCRYGG 4 cut(s) 108, 168, 1449, 1578
BtgZI GCGATG 1 cut(s) 1416
BtrI CACGTC 1 cut(s) 937
BtsCI GGATG 8 cut(s) 484, 1155, 1158, 1160, 1558, 1687, 1799, 1831
BtsI GCAGTG 1 cut(s) 1357
BtsIMutI CAGTG 1 cut(s) 1357
BveI ACCTGC 1 cut(s) 1381
Cac8I GCNNGC 6 cut(s) 30, 874, 1186, 1399, 1590, 1652
CciI TCATGA 2 cut(s) 768, 1296
CfoI GCGC 5 cut(s) 44, 203, 319, 1068, 1424
Cfr13I GGNCC 3 cut(s) 238, 353, 1052
ClaI ATCGAT 1 cut(s) 1233
CseI GACGC 4 cut(s) 530, 676, 1131, 1177
Csp6I GTAC 5 cut(s) 65, 454, 570, 1505, 1860
CspCI CAANNNNNGTGG 2 cut(s) 1366, 1401
CviQI GTAC 5 cut(s) 65, 454, 570, 1505, 1860
DdeI CTNAG 3 cut(s) 267, 662, 891
DinI GGCGCC 1 cut(s) 43
DpnI GATC 7 cut(s) 159, 227, 255, 1121, 1222, 1788, 1874
DpnII GATC 7 cut(s) 157, 225, 253, 1119, 1220, 1786, 1872
DrdI GACNNNNNNGTC 1 cut(s) 140
DriI GACNNNNNGTC 1 cut(s) 1141
DseDI GACNNNNNNGTC 1 cut(s) 140
EaeI YGGCCR 1 cut(s) 105
EagI CGGCCG 1 cut(s) 105
Eam1104I CTCTTC 6 cut(s) 171, 401, 917, 980, 1122, 1769
Eam1105I GACNNNNNGTC 1 cut(s) 1141
EarI CTCTTC 6 cut(s) 171, 401, 917, 980, 1122, 1769
EciI GGCGGA 1 cut(s) 1606
Ecl136II GAGCTC 1 cut(s) 271
EclXI CGGCCG 1 cut(s) 105
Eco130I CCWWGG 8 cut(s) 168, 651, 880, 1199, 1266, 1761, 1855, 1880
Eco24I GRGCYC 1 cut(s) 273
Eco47I GGWCC 1 cut(s) 238
Eco52I CGGCCG 1 cut(s) 105
Eco53kI GAGCTC 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 959
EcoICRI GAGCTC 1 cut(s) 271
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoRI GAATTC 2 cut(s) 596, 1490
EcoT14I CCWWGG 8 cut(s) 168, 651, 880, 1199, 1266, 1761, 1855, 1880
EcoT22I ATGCAT 1 cut(s) 1160
EcoT38I GRGCYC 1 cut(s) 273
EgeI GGCGCC 1 cut(s) 43
EheI GGCGCC 1 cut(s) 43
ErhI CCWWGG 8 cut(s) 168, 651, 880, 1199, 1266, 1761, 1855, 1880
Esp3I CGTCTC 2 cut(s) 356, 927
FalI AAGNNNNNCTT 2 cut(s) 1025, 1057
FaqI GGGAC 2 cut(s) 838, 1175
FauI CCCGC 1 cut(s) 1871
FbaI TGATCA 1 cut(s) 253
FblI GTMKAC 1 cut(s) 1440
Fnu4HI GCNGC 6 cut(s) 72, 165, 333, 843, 846, 1848
FokI GGATG 8 cut(s) 491, 1145, 1162, 1167, 1565, 1694, 1806, 1818
FriOI GRGCYC 1 cut(s) 273
Fsp4HI GCNGC 6 cut(s) 72, 165, 333, 843, 846, 1848
FspBI CTAG 5 cut(s) 515, 873, 1116, 1185, 1664
GlaI GCGC 5 cut(s) 43, 202, 318, 1067, 1423
GluI GCNGC 6 cut(s) 72, 165, 333, 843, 846, 1848
HaeII RGCGCY 4 cut(s) 45, 204, 320, 1425
HaeIII GGCC 7 cut(s) 107, 355, 1053, 1326, 1485, 1780, 1830
HapII CCGG 2 cut(s) 6, 1162
HgaI GACGC 4 cut(s) 530, 676, 1131, 1177
HhaI GCGC 5 cut(s) 44, 203, 319, 1068, 1424
Hin1I GRCGYC 4 cut(s) 42, 141, 541, 1301
Hin6I GCGC 5 cut(s) 42, 201, 317, 1066, 1422
HinP1I GCGC 5 cut(s) 42, 201, 317, 1066, 1422
HincII GTYRAC 3 cut(s) 703, 715, 1441
HindII GTYRAC 3 cut(s) 703, 715, 1441
HindIII AAGCTT 6 cut(s) 248, 470, 659, 794, 1319, 1635
HinfI GANTC 8 cut(s) 101, 377, 485, 851, 962, 1112, 1332, 1343
HpaI GTTAAC 1 cut(s) 715
HpaII CCGG 2 cut(s) 6, 1162
HphI GGTGA 4 cut(s) 994, 1375, 1438, 1835
Hpy166II GTNNAC 4 cut(s) 703, 715, 1414, 1441
Hpy188I TCNGA 7 cut(s) 92, 230, 242, 284, 1306, 1331, 1705
Hpy8I GTNNAC 4 cut(s) 703, 715, 1414, 1441
Hpy99I CGWCG 4 cut(s) 146, 546, 1052, 1306
HpyCH4III ACNGT 3 cut(s) 1073, 1363, 1450
HpyCH4IV ACGT 4 cut(s) 141, 572, 936, 1301
HpyF3I CTNAG 3 cut(s) 267, 662, 891
HpySE526I ACGT 4 cut(s) 141, 572, 936, 1301
Hsp92I GRCGYC 4 cut(s) 42, 141, 541, 1301
HspAI GCGC 5 cut(s) 42, 201, 317, 1066, 1422
KasI GGCGCC 1 cut(s) 41
Kpn2I TCCGGA 1 cut(s) 5
KpnI GGTACC 1 cut(s) 1863
Ksp22I TGATCA 1 cut(s) 253
KspAI GTTAAC 1 cut(s) 715
Kzo9I GATC 7 cut(s) 157, 225, 253, 1119, 1220, 1786, 1872
LmnI GCTCC 4 cut(s) 25, 51, 1280, 1844
LpnPI CCDG 3 cut(s) 19, 1175, 1386
Lsp1109I GCAGC 3 cut(s) 58, 176, 319
LweI GCATC 5 cut(s) 70, 1053, 1129, 1145, 1167
MaeI CTAG 5 cut(s) 515, 873, 1116, 1185, 1664
MaeII ACGT 4 cut(s) 141, 572, 936, 1301
MaeIII GTNAC 3 cut(s) 145, 828, 1333
MalI GATC 7 cut(s) 159, 227, 255, 1121, 1222, 1788, 1874
MboI GATC 7 cut(s) 157, 225, 253, 1119, 1220, 1786, 1872
MflI RGATCY 2 cut(s) 157, 225
MhlI GDGCHC 3 cut(s) 273, 735, 1578
MluCI AATT 4 cut(s) 492, 596, 1490, 1559
Mly113I GGCGCC 1 cut(s) 42
MlyI GAGTC 7 cut(s) 371, 494, 860, 971, 1121, 1341, 1352
MmeI TCCRAC 2 cut(s) 1284, 1672
Mph1103I ATGCAT 1 cut(s) 1160
MroI TCCGGA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 989
MseI TTAA 3 cut(s) 339, 714, 1891
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 2 cut(s) 6, 1162
Mva1269I GAATGC 1 cut(s) 1511
MvnI CGCG 2 cut(s) 1068, 1401
NarI GGCGCC 1 cut(s) 42
NcoI CCATGG 1 cut(s) 168
NdeII GATC 7 cut(s) 157, 225, 253, 1119, 1220, 1786, 1872
NheI GCTAGC 2 cut(s) 872, 1184
NlaIV GGNNCC 6 cut(s) 43, 53, 227, 1575, 1846, 1861
NmeAIII GCCGAG 1 cut(s) 874
NmuCI GTSAC 3 cut(s) 145, 828, 1333
NsiI ATGCAT 1 cut(s) 1160
NspV TTCGAA 1 cut(s) 726
PagI TCATGA 2 cut(s) 768, 1296
PaqCI CACCTGC 1 cut(s) 1381
PcsI WCGNNNNNNNCGW 4 cut(s) 141, 999, 1446, 1470
PctI GAATGC 1 cut(s) 1511
PdmI GAANNNNTTC 1 cut(s) 989
PfeI GAWTC 1 cut(s) 101
PkrI GCNGC 6 cut(s) 73, 166, 334, 844, 847, 1849
PleI GAGTC 7 cut(s) 371, 493, 859, 970, 1120, 1340, 1351
PluTI GGCGCC 1 cut(s) 45
PpsI GAGTC 7 cut(s) 371, 493, 859, 970, 1120, 1340, 1351
Psp124BI GAGCTC 1 cut(s) 273
PspN4I GGNNCC 6 cut(s) 43, 53, 227, 1575, 1846, 1861
PspPI GGNCC 3 cut(s) 238, 353, 1052
PsuI RGATCY 2 cut(s) 157, 225
RsaI GTAC 5 cut(s) 66, 455, 571, 1506, 1861
RsaNI GTAC 5 cut(s) 65, 454, 570, 1505, 1860
SacI GAGCTC 1 cut(s) 273
SalI GTCGAC 1 cut(s) 1439
SaqAI TTAA 3 cut(s) 339, 714, 1891
SatI GCNGC 6 cut(s) 72, 165, 333, 843, 846, 1848
Sau3AI GATC 7 cut(s) 157, 225, 253, 1119, 1220, 1786, 1872
Sau96I GGNCC 3 cut(s) 238, 353, 1052
ScaI AGTACT 1 cut(s) 66
SchI GAGTC 7 cut(s) 371, 494, 860, 971, 1121, 1341, 1352
SduI GDGCHC 3 cut(s) 273, 735, 1578
SfaNI GCATC 5 cut(s) 70, 1053, 1129, 1145, 1167
SfoI GGCGCC 1 cut(s) 43
SfuI TTCGAA 1 cut(s) 726
SinI GGWCC 1 cut(s) 238
SmlI CTYRAG 4 cut(s) 473, 797, 1673, 1736
SmoI CTYRAG 4 cut(s) 473, 797, 1673, 1736
Sse9I AATT 4 cut(s) 492, 596, 1490, 1559
SsiI CCGC 9 cut(s) 264, 843, 846, 1011, 1278, 1550, 1617, 1848, 1864
SspDI GGCGCC 1 cut(s) 41
SspMI CTAG 5 cut(s) 515, 873, 1116, 1185, 1664
SstI GAGCTC 1 cut(s) 273
StyI CCWWGG 8 cut(s) 168, 651, 880, 1199, 1266, 1761, 1855, 1880
TaaI ACNGT 3 cut(s) 1073, 1363, 1450
TaiI ACGT 4 cut(s) 144, 575, 939, 1304
TasI AATT 4 cut(s) 492, 596, 1490, 1559
TatI WGTACW 1 cut(s) 64
TauI GCSGC 3 cut(s) 845, 848, 1850
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 3 cut(s) 339, 714, 1891
Tru9I TTAA 3 cut(s) 339, 714, 1891
TscAI CASTG 1 cut(s) 1357
TseFI GTSAC 3 cut(s) 145, 828, 1333
TseI GCWGC 3 cut(s) 71, 164, 332
Tsp45I GTSAC 3 cut(s) 145, 828, 1333
TspDTI ATGAA 5 cut(s) 660, 757, 1046, 1285, 1483
TspGWI ACGGA 1 cut(s) 758
TspRI CASTG 1 cut(s) 1357
VpaK11BI GGWCC 1 cut(s) 238
XagI CCTNNNNNAGG 1 cut(s) 284
XapI RAATTY 3 cut(s) 492, 596, 1490
XmiI GTMKAC 1 cut(s) 1440
XmnI GAANNNNTTC 1 cut(s) 989
XspI CTAG 5 cut(s) 515, 873, 1116, 1185, 1664
ZraI GACGTC 2 cut(s) 142, 1302
ZrmI AGTACT 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.