FvH4_6g50161

Reverse transcriptase (RNA-dependent DNA polymerase)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000385
Physical Location & Seq
Reverse (-)
37383271 .. 37384565
1295 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g50161.t1

Sequence Viewer

Length: 615 bp
ATGATTCGTGCCTTGGTGGATTGCGGAGCAACTCATAACTTCATGACGTCGGAAGAAGCAAGGAAACTTGGCCTCCGAGTCACGAAGGAGTCAGGCAGTGTGAAGACAGTGAATACACCTGCCACACCTATTGTTTGGGTAGCACGCGATGTGGAGGTTCACATTGACGCTTGGAAGGGGAAAGTCGACTTCACCATGGTCAAGATGGATGACTCTGGCGTGGTAATCGGCCTTGAATTCATGGACAATGTACGAGCATTTTCCATTCCATTCTATAACATCTTTTGCATTGTTGCGGATAGAGAATTGTCTTGCGTGGTGCTCGTGGCAAGGCAAGCAAGGGAGAAGACAAAGGCTCTATCCGCCATGCAACTCGCTAAAGCTTGGAAGAAGGGCGAGCCGACATTCCTAGCAACCCTCAAGATGGATGAGGAGGGAGAACGAACTCTATGTGAAGAAGGAGAAATGTTCCTTTGCCAAGGAGGAAGTGGACTTCCTAGGCCACAAGATCAAGGATGGAAAGCTCTTGATGGAGGAAAGCAAGGTGAAGGCCATCCAAGATTGGGAGCCGCCAACCAAGGTACCCGCACTTCGATCATTCCTTGGCTTGGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1

Protein Analysis

205

Amino Acids

22.41

Weight (kDa)

6.83

Isoelectric Point (pI)

27.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
gag-asp_proteas PF13975 2 - 82 8.6e-09 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 2 - 80 3e-07 Aspartyl protease
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 127
AatII GACGTC 1 cut(s) 50
Acc36I ACCTGC 1 cut(s) 127
Acc65I GGTACC 1 cut(s) 581
AccB1I GGYRCC 1 cut(s) 581
AccI GTMKAC 1 cut(s) 186
AccII CGCG 1 cut(s) 147
AciI CCGC 5 cut(s) 24, 296, 363, 570, 586
AcsI RAATTY 1 cut(s) 236
AcyI GRCGYC 1 cut(s) 47
AfaI GTAC 2 cut(s) 252, 583
AfiI CCNNNNNNNGG 3 cut(s) 424, 563, 608
AgsI TTSAA 1 cut(s) 236
AluBI AGCT 2 cut(s) 383, 524
AluI AGCT 2 cut(s) 383, 524
Alw21I GWGCWC 1 cut(s) 324
AoxI GGCC 4 cut(s) 70, 229, 500, 550
ApoI RAATTY 1 cut(s) 236
Asp718I GGTACC 1 cut(s) 581
AspA2I CCTAGG 1 cut(s) 497
AsuHPI GGTGA 2 cut(s) 184, 557
AvrII CCTAGG 1 cut(s) 497
BaeI ACNNNNGTAYC 2 cut(s) 565, 598
BanI GGYRCC 1 cut(s) 581
BarI GAAGNNNNNNTAC 2 cut(s) 574, 606
BauI CACGAG 1 cut(s) 323
BbsI GAAGAC 2 cut(s) 110, 353
Bbv12I GWGCWC 1 cut(s) 324
BccI CCATC 5 cut(s) 199, 418, 510, 524, 561
BfaI CTAG 2 cut(s) 410, 498
BfuAI ACCTGC 1 cut(s) 127
BisI GCNGC 1 cut(s) 570
BlnI CCTAGG 1 cut(s) 497
BlsI GCNGC 1 cut(s) 571
BmiI GGNNCC 2 cut(s) 568, 583
BpiI GAAGAC 2 cut(s) 110, 353
BpuEI CTTGAG 1 cut(s) 404
BsaHI GRCGYC 1 cut(s) 47
BsaJI CCNNGG 6 cut(s) 12, 195, 478, 497, 577, 602
BsaXI ACNNNNNCTCC 2 cut(s) 57, 87
Bsc4I CCNNNNNNNGG 3 cut(s) 424, 563, 608
BseDI CCNNGG 6 cut(s) 12, 195, 478, 497, 577, 602
BseGI GGATG 4 cut(s) 214, 433, 521, 553
BseLI CCNNNNNNNGG 3 cut(s) 424, 563, 608
BseRI GAGGAG 1 cut(s) 446
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 4 cut(s) 72, 231, 502, 552
BshNI GGYRCC 1 cut(s) 581
BsiHKAI GWGCWC 1 cut(s) 324
BslI CCNNNNNNNGG 3 cut(s) 424, 563, 608
BsnI GGCC 4 cut(s) 72, 231, 502, 552
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 2 cut(s) 508, 594
Bsp19I CCATGG 1 cut(s) 195
BspACI CCGC 5 cut(s) 24, 296, 363, 570, 586
BspANI GGCC 4 cut(s) 72, 231, 502, 552
BspFNI CGCG 1 cut(s) 147
BspHI TCATGA 1 cut(s) 42
BspLI GGNNCC 2 cut(s) 568, 583
BspMI ACCTGC 1 cut(s) 127
BspT107I GGYRCC 1 cut(s) 581
BssECI CCNNGG 6 cut(s) 12, 195, 478, 497, 577, 602
BssMI GATC 2 cut(s) 508, 594
BssNI GRCGYC 1 cut(s) 47
BssSI CACGAG 1 cut(s) 323
BssT1I CCWWGG 6 cut(s) 12, 195, 478, 497, 577, 602
Bst2BI CACGAG 1 cut(s) 323
Bst4CI ACNGT 1 cut(s) 109
BstACI GRCGYC 1 cut(s) 47
BstC8I GCNNGC 3 cut(s) 145, 336, 398
BstDSI CCRYGG 1 cut(s) 195
BstF5I GGATG 4 cut(s) 214, 433, 521, 553
BstFNI CGCG 1 cut(s) 147
BstKTI GATC 2 cut(s) 511, 597
BstMBI GATC 2 cut(s) 508, 594
BstMWI GCNNNNNNNGC 2 cut(s) 335, 362
BstUI CGCG 1 cut(s) 147
BstV2I GAAGAC 2 cut(s) 110, 353
BsuRI GGCC 4 cut(s) 72, 231, 502, 552
BtgI CCRYGG 1 cut(s) 195
BtgZI GCGATG 1 cut(s) 162
BtsCI GGATG 4 cut(s) 214, 433, 521, 553
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 2 cut(s) 103, 114
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 3 cut(s) 145, 336, 398
CciI TCATGA 1 cut(s) 42
CseI GACGC 1 cut(s) 176
Csp6I GTAC 2 cut(s) 251, 582
CspCI CAANNNNNGTGG 2 cut(s) 112, 147
CviAII CATG 4 cut(s) 43, 196, 241, 367
CviQI GTAC 2 cut(s) 251, 582
DpnI GATC 2 cut(s) 510, 596
DpnII GATC 2 cut(s) 508, 594
EciI GGCGGA 1 cut(s) 352
Eco130I CCWWGG 6 cut(s) 12, 195, 478, 497, 577, 602
EcoRI GAATTC 1 cut(s) 236
EcoT14I CCWWGG 6 cut(s) 12, 195, 478, 497, 577, 602
ErhI CCWWGG 6 cut(s) 12, 195, 478, 497, 577, 602
FaeI CATG 4 cut(s) 46, 199, 244, 370
FaiI YATR 7 cut(s) 36, 44, 197, 242, 276, 368, 451
FatI CATG 4 cut(s) 42, 195, 240, 366
FauI CCCGC 1 cut(s) 593
FblI GTMKAC 1 cut(s) 186
Fnu4HI GCNGC 1 cut(s) 570
FokI GGATG 4 cut(s) 221, 440, 528, 540
Fsp4HI GCNGC 1 cut(s) 570
FspBI CTAG 2 cut(s) 410, 498
GluI GCNGC 1 cut(s) 570
HaeIII GGCC 4 cut(s) 72, 231, 502, 552
HgaI GACGC 1 cut(s) 176
Hin1I GRCGYC 1 cut(s) 47
Hin1II CATG 4 cut(s) 46, 199, 244, 370
HincII GTYRAC 1 cut(s) 187
HindII GTYRAC 1 cut(s) 187
HindIII AAGCTT 1 cut(s) 381
HinfI GANTC 4 cut(s) 4, 78, 89, 212
HphI GGTGA 2 cut(s) 184, 557
Hpy166II GTNNAC 3 cut(s) 160, 187, 491
Hpy188I TCNGA 2 cut(s) 52, 77
Hpy188III TCNNGA 5 cut(s) 43, 82, 202, 421, 527
Hpy8I GTNNAC 3 cut(s) 160, 187, 491
Hpy99I CGWCG 1 cut(s) 52
HpyAV CCTTC 5 cut(s) 79, 169, 385, 452, 542
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 47
HpyCH4V TGCA 2 cut(s) 288, 370
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 362
HpySE526I ACGT 1 cut(s) 47
Hsp92I GRCGYC 1 cut(s) 47
Hsp92II CATG 4 cut(s) 46, 199, 244, 370
KpnI GGTACC 1 cut(s) 585
Kzo9I GATC 2 cut(s) 508, 594
LmnI GCTCC 2 cut(s) 26, 566
LpnPI CCDG 3 cut(s) 78, 132, 201
MaeI CTAG 2 cut(s) 410, 498
MaeII ACGT 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 79
MalI GATC 2 cut(s) 510, 596
MboI GATC 2 cut(s) 508, 594
MboII GAAGA 5 cut(s) 65, 115, 358, 400, 467
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 2 cut(s) 236, 305
MlyI GAGTC 3 cut(s) 87, 98, 206
MmeI TCCRAC 1 cut(s) 30
MnlI CCTC 7 cut(s) 83, 148, 424, 427, 428, 476, 527
MseI TTAA 1 cut(s) 613
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 335, 362
NcoI CCATGG 1 cut(s) 195
NdeII GATC 2 cut(s) 508, 594
NlaIII CATG 4 cut(s) 46, 199, 244, 370
NlaIV GGNNCC 2 cut(s) 568, 583
NmuCI GTSAC 1 cut(s) 79
PagI TCATGA 1 cut(s) 42
PaqCI CACCTGC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 571
PleI GAGTC 3 cut(s) 86, 97, 206
PpsI GAGTC 3 cut(s) 86, 97, 206
PspN4I GGNNCC 2 cut(s) 568, 583
RsaI GTAC 2 cut(s) 252, 583
RsaNI GTAC 2 cut(s) 251, 582
SalI GTCGAC 1 cut(s) 185
SaqAI TTAA 1 cut(s) 613
SatI GCNGC 1 cut(s) 570
Sau3AI GATC 2 cut(s) 508, 594
SchI GAGTC 3 cut(s) 87, 98, 206
SduI GDGCHC 1 cut(s) 324
SetI ASST 8 cut(s) 50, 121, 130, 159, 385, 526, 547, 583
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 2 cut(s) 236, 305
SsiI CCGC 5 cut(s) 24, 296, 363, 570, 586
SspMI CTAG 2 cut(s) 410, 498
StyI CCWWGG 6 cut(s) 12, 195, 478, 497, 577, 602
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 50
TaqI TCGA 2 cut(s) 186, 593
TasI AATT 2 cut(s) 236, 305
TauI GCSGC 1 cut(s) 572
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 613
Tru9I TTAA 1 cut(s) 613
TscAI CASTG 2 cut(s) 103, 114
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 31, 229
TspRI CASTG 2 cut(s) 103, 114
XapI RAATTY 1 cut(s) 236
XcmI CCANNNNNNNNNTGG 2 cut(s) 202, 485
XmaJI CCTAGG 1 cut(s) 497
XmiI GTMKAC 1 cut(s) 186
XspI CTAG 2 cut(s) 410, 498
ZraI GACGTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.