Rroxscaffold_7G00156270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000385
Physical Location & Seq
Reverse (-)
9271 .. 11035
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00156270.1

Sequence Viewer

Length: 525 bp
ATGGCGGGTAGCAATGATACTTTGAAGGAGAGAGTGGAAAGCCTTGGCCTACAGATTGAAGAAATAGAAGCAAGCTTAATTATTCAAGTGGAACAATTGAAGCAAGAACTAGCATCAATGCATGTTGCATTCGATGGCCATGTGCACAAGATGGAAGAGAGGATGGAGACTAGCGAGCATAGGCGCAAGGTTGCTATTGGGCGCCACTTTGACTTTTACACAATAATCCTCCCAAGGGAGACCATTGCCTTTGGGCCCTTCAAGAGGAGTAGCAAGATGCATGTTGACTACATTACCGCCTTGCAAACCTACGACTTTGAGTGGAAGCTCAAGTTAGGGCAGCACGAGGAGGTGAACGAGCCTAATCCACTTCAAGAGGTCATCATCATAGACGACGATCTTAGTGACATGGGCGAACCTATGCCCATGGCCGAGGAAGATGTCACCACCACCAACAACAAAGGCCAAGGTAGAGGTAGGGCGGATCCGGGAGAGATTGAAGTAGAGATGCTTGGATCCGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

174

Amino Acids

19.8

Weight (kDa)

4.76

Isoelectric Point (pI)

63.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 201
AciI CCGC 3 cut(s) 5, 297, 482
AclWI GGATC 4 cut(s) 479, 492, 510, 523
AcoI YGGCCR 2 cut(s) 136, 429
AcyI GRCGYC 1 cut(s) 202
AfiI CCNNNNNNNGG 2 cut(s) 235, 264
AgsI TTSAA 7 cut(s) 25, 59, 86, 100, 262, 374, 500
AluBI AGCT 2 cut(s) 75, 328
AluI AGCT 2 cut(s) 75, 328
Alw21I GWGCWC 1 cut(s) 147
Alw26I GTCTC 2 cut(s) 161, 233
Alw44I GTGCAC 1 cut(s) 143
AlwI GGATC 4 cut(s) 479, 492, 510, 523
AoxI GGCC 5 cut(s) 46, 136, 254, 429, 463
ApaI GGGCCC 1 cut(s) 258
ApaLI GTGCAC 1 cut(s) 143
ApeKI GCWGC 1 cut(s) 340
AspLEI GCGC 2 cut(s) 186, 204
AspS9I GGNCC 2 cut(s) 254, 255
AsuC2I CCSGG 2 cut(s) 489, 520
AsuHPI GGTGA 2 cut(s) 364, 436
BaeGI GKGCMC 2 cut(s) 147, 258
BalI TGGCCA 1 cut(s) 138
BamHI GGATCC 2 cut(s) 484, 515
BanI GGYRCC 1 cut(s) 201
BanII GRGCYC 1 cut(s) 258
BauI CACGAG 1 cut(s) 344
Bbv12I GWGCWC 1 cut(s) 147
BbvI GCAGC 1 cut(s) 352
BccI CCATC 3 cut(s) 128, 145, 157
BcnI CCSGG 2 cut(s) 489, 520
BcoDI GTCTC 2 cut(s) 161, 233
BfaI CTAG 2 cut(s) 110, 171
BfmI CTRYAG 1 cut(s) 50
BfoI RGCGCY 1 cut(s) 205
BisI GCNGC 1 cut(s) 341
BlsI GCNGC 1 cut(s) 342
Bme1390I CCNGG 2 cut(s) 489, 520
BmgT120I GGNCC 2 cut(s) 254, 255
BmiI GGNNCC 4 cut(s) 203, 256, 486, 517
BmrFI CCNGG 2 cut(s) 489, 520
BmsI GCATC 3 cut(s) 122, 267, 498
BpuEI CTTGAG 1 cut(s) 314
BpuMI CCSGG 2 cut(s) 489, 520
BsaHI GRCGYC 1 cut(s) 202
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 5 cut(s) 43, 233, 426, 432, 466
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 264
Bse3DI GCAATG 2 cut(s) 19, 243
BseDI CCNNGG 5 cut(s) 43, 233, 426, 432, 466
BseGI GGATG 1 cut(s) 168
BseLI CCNNNNNNNGG 2 cut(s) 235, 264
BseMI GCAATG 2 cut(s) 19, 243
BseRI GAGGAG 2 cut(s) 280, 362
BseSI GKGCMC 2 cut(s) 147, 258
BseXI GCAGC 1 cut(s) 352
BshFI GGCC 5 cut(s) 48, 138, 256, 431, 465
BshNI GGYRCC 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 147
BsiSI CCGG 2 cut(s) 488, 519
BslI CCNNNNNNNGG 2 cut(s) 235, 264
BsmAI GTCTC 2 cut(s) 161, 233
BsmI GAATGC 1 cut(s) 128
BsnI GGCC 5 cut(s) 48, 138, 256, 431, 465
Bso31I GGTCTC 1 cut(s) 233
Bsp120I GGGCCC 1 cut(s) 254
Bsp1286I GDGCHC 2 cut(s) 147, 258
Bsp143I GATC 3 cut(s) 397, 484, 515
Bsp19I CCATGG 1 cut(s) 426
BspACI CCGC 3 cut(s) 5, 297, 482
BspANI GGCC 5 cut(s) 48, 138, 256, 431, 465
BspLI GGNNCC 4 cut(s) 203, 256, 486, 517
BspPI GGATC 4 cut(s) 479, 492, 510, 523
BspT107I GGYRCC 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 233
BsrDI GCAATG 2 cut(s) 19, 243
BssECI CCNNGG 5 cut(s) 43, 233, 426, 432, 466
BssMI GATC 3 cut(s) 397, 484, 515
BssNI GRCGYC 1 cut(s) 202
BssSI CACGAG 1 cut(s) 344
BssT1I CCWWGG 4 cut(s) 43, 233, 426, 466
Bst2BI CACGAG 1 cut(s) 344
Bst6I CTCTTC 1 cut(s) 150
BstACI GRCGYC 1 cut(s) 202
BstC8I GCNNGC 2 cut(s) 73, 176
BstDEI CTNAG 1 cut(s) 401
BstDSI CCRYGG 1 cut(s) 426
BstENI CCTNNNNNAGG 1 cut(s) 262
BstF5I GGATG 1 cut(s) 168
BstH2I RGCGCY 1 cut(s) 205
BstHHI GCGC 2 cut(s) 186, 204
BstKTI GATC 3 cut(s) 400, 487, 518
BstMAI GTCTC 2 cut(s) 161, 233
BstMBI GATC 3 cut(s) 397, 484, 515
BstNSI RCATGY 2 cut(s) 125, 284
BstSCI CCNGG 2 cut(s) 487, 518
BstSFI CTRYAG 1 cut(s) 50
BstSLI GKGCMC 2 cut(s) 147, 258
BstV1I GCAGC 1 cut(s) 352
BstX2I RGATCY 2 cut(s) 484, 515
BstYI RGATCY 2 cut(s) 484, 515
BsuRI GGCC 5 cut(s) 48, 138, 256, 431, 465
BtgI CCRYGG 1 cut(s) 426
BtsCI GGATG 1 cut(s) 168
Cac8I GCNNGC 2 cut(s) 73, 176
CfoI GCGC 2 cut(s) 186, 204
Cfr13I GGNCC 2 cut(s) 254, 255
CviAII CATG 5 cut(s) 122, 140, 281, 409, 427
CviJI RGCY 9 cut(s) 42, 48, 75, 138, 256, 328, 361, 431, 465
CviKI_1 RGCY 9 cut(s) 42, 48, 75, 138, 256, 328, 361, 431, 465
DdeI CTNAG 1 cut(s) 401
DinI GGCGCC 1 cut(s) 203
DpnI GATC 3 cut(s) 399, 486, 517
DpnII GATC 3 cut(s) 397, 484, 515
EaeI YGGCCR 2 cut(s) 136, 429
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
EciI GGCGGA 1 cut(s) 497
Eco130I CCWWGG 4 cut(s) 43, 233, 426, 466
Eco24I GRGCYC 1 cut(s) 258
Eco31I GGTCTC 1 cut(s) 233
EcoNI CCTNNNNNAGG 1 cut(s) 262
EcoO109I RGGNCCY 1 cut(s) 255
EcoT14I CCWWGG 4 cut(s) 43, 233, 426, 466
EcoT22I ATGCAT 2 cut(s) 123, 282
EcoT38I GRGCYC 1 cut(s) 258
EgeI GGCGCC 1 cut(s) 203
EheI GGCGCC 1 cut(s) 203
ErhI CCWWGG 4 cut(s) 43, 233, 426, 466
FaeI CATG 5 cut(s) 125, 143, 284, 412, 430
FaiI YATR 8 cut(s) 123, 141, 180, 282, 389, 410, 422, 428
FatI CATG 5 cut(s) 121, 139, 280, 408, 426
Fnu4HI GCNGC 1 cut(s) 341
FokI GGATG 1 cut(s) 175
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 1 cut(s) 341
FspBI CTAG 2 cut(s) 110, 171
GlaI GCGC 2 cut(s) 185, 203
GluI GCNGC 1 cut(s) 341
HaeII RGCGCY 1 cut(s) 205
HaeIII GGCC 5 cut(s) 48, 138, 256, 431, 465
HapII CCGG 2 cut(s) 488, 519
HhaI GCGC 2 cut(s) 186, 204
Hin1I GRCGYC 1 cut(s) 202
Hin1II CATG 5 cut(s) 125, 143, 284, 412, 430
Hin6I GCGC 2 cut(s) 184, 202
HinP1I GCGC 2 cut(s) 184, 202
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 73
HpaII CCGG 2 cut(s) 488, 519
HphI GGTGA 2 cut(s) 364, 436
Hpy166II GTNNAC 3 cut(s) 145, 286, 355
Hpy188III TCNNGA 2 cut(s) 262, 374
Hpy8I GTNNAC 3 cut(s) 145, 286, 355
Hpy99I CGWCG 1 cut(s) 398
HpyAV CCTTC 2 cut(s) 19, 268
HpyCH4V TGCA 5 cut(s) 121, 128, 145, 280, 304
HpyF3I CTNAG 1 cut(s) 401
Hsp92I GRCGYC 1 cut(s) 202
Hsp92II CATG 5 cut(s) 125, 143, 284, 412, 430
HspAI GCGC 2 cut(s) 184, 202
KasI GGCGCC 1 cut(s) 201
Kzo9I GATC 3 cut(s) 397, 484, 515
LpnPI CCDG 1 cut(s) 501
Lsp1109I GCAGC 1 cut(s) 352
LweI GCATC 3 cut(s) 122, 267, 498
MaeI CTAG 2 cut(s) 110, 171
MaeIII GTNAC 2 cut(s) 404, 442
MalI GATC 3 cut(s) 399, 486, 517
MboI GATC 3 cut(s) 397, 484, 515
MboII GAAGA 3 cut(s) 71, 167, 449
MfeI CAATTG 1 cut(s) 95
MflI RGATCY 2 cut(s) 484, 515
MhlI GDGCHC 2 cut(s) 147, 258
MlsI TGGCCA 1 cut(s) 138
MluCI AATT 2 cut(s) 78, 95
MluNI TGGCCA 1 cut(s) 138
Mly113I GGCGCC 1 cut(s) 202
MnlI CCTC 8 cut(s) 153, 239, 258, 340, 343, 370, 427, 467
Mox20I TGGCCA 1 cut(s) 138
Mph1103I ATGCAT 2 cut(s) 123, 282
MscI TGGCCA 1 cut(s) 138
MseI TTAA 1 cut(s) 77
Msp20I TGGCCA 1 cut(s) 138
MspI CCGG 2 cut(s) 488, 519
MspR9I CCNGG 2 cut(s) 489, 520
MunI CAATTG 1 cut(s) 95
Mva1269I GAATGC 1 cut(s) 128
NarI GGCGCC 1 cut(s) 202
NciI CCSGG 2 cut(s) 489, 520
NcoI CCATGG 1 cut(s) 426
NdeII GATC 3 cut(s) 397, 484, 515
NlaIII CATG 5 cut(s) 125, 143, 284, 412, 430
NlaIV GGNNCC 4 cut(s) 203, 256, 486, 517
NmeAIII GCCGAG 1 cut(s) 457
NmuCI GTSAC 2 cut(s) 404, 442
NsiI ATGCAT 2 cut(s) 123, 282
NspI RCATGY 2 cut(s) 125, 284
PctI GAATGC 1 cut(s) 128
PfoI TCCNGGA 1 cut(s) 487
PkrI GCNGC 1 cut(s) 342
PluTI GGCGCC 1 cut(s) 205
PspN4I GGNNCC 4 cut(s) 203, 256, 486, 517
PspOMI GGGCCC 1 cut(s) 254
PspPI GGNCC 2 cut(s) 254, 255
PsuI RGATCY 2 cut(s) 484, 515
SaqAI TTAA 1 cut(s) 77
SatI GCNGC 1 cut(s) 341
Sau3AI GATC 3 cut(s) 397, 484, 515
Sau96I GGNCC 2 cut(s) 254, 255
ScrFI CCNGG 2 cut(s) 489, 520
SduI GDGCHC 2 cut(s) 147, 258
SetI ASST 9 cut(s) 77, 192, 311, 330, 354, 381, 421, 472, 478
SfaNI GCATC 3 cut(s) 122, 267, 498
SfcI CTRYAG 1 cut(s) 50
SfoI GGCGCC 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
Sse9I AATT 2 cut(s) 78, 95
SsiI CCGC 3 cut(s) 5, 297, 482
SspDI GGCGCC 1 cut(s) 201
SspMI CTAG 2 cut(s) 110, 171
StyD4I CCNGG 2 cut(s) 487, 518
StyI CCWWGG 4 cut(s) 43, 233, 426, 466
TaqI TCGA 1 cut(s) 132
TasI AATT 2 cut(s) 78, 95
Tru1I TTAA 1 cut(s) 77
Tru9I TTAA 1 cut(s) 77
TseFI GTSAC 2 cut(s) 404, 442
TseI GCWGC 1 cut(s) 340
Tsp45I GTSAC 2 cut(s) 404, 442
VneI GTGCAC 1 cut(s) 143
XagI CCTNNNNNAGG 1 cut(s) 262
XceI RCATGY 2 cut(s) 125, 284
XspI CTAG 2 cut(s) 110, 171
Zsp2I ATGCAT 2 cut(s) 123, 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.