FvH4_3g25910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000385
Physical Location & Seq
Reverse (-)
18783610 .. 18784115
506 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25910.t1

Sequence Viewer

Length: 459 bp
ATGTCGGGACGCATGAAGGCACAAGCAAGGACAAACTCTAGTAGGATGGGAAAGTTGGTATGCGGCAACGATCTAAGCCAAAGGAAGGAAGGCGGCATGGACCCCAAAGGCTTGGCAGGGTGCAGTGTTGGGTGCATGATAAGTGTGATCGGTAGGGTGCAATGTTGGGTGCGGCAGGATGGTGCTACGAAGGTGTGGGAAGGGTGCAAAAAAGGTGCGCTGCAAGGTGCTCAGAAGGGTGCACGCGGATGCACTCTAAGGTGCATATGTGTGCATGGCGGTTACAAGCGGTTGAGAAAGCAAGTTAGTGGGAAGTTATCTTCACAAAGCATGCAAGTTAGTGAGCGGTTACCTAGCACCAAAAGTGGGGAAATTGGCAAGGAAATTATATATATCTTGGTGGTTATCTATAAGGTAGTTAATAATCCTATAATAGTGGGGGATGTCAACTACTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

16.38

Weight (kDa)

9.89

Isoelectric Point (pI)

31.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 346
AccII CGCG 1 cut(s) 246
AciI CCGC 7 cut(s) 63, 93, 172, 246, 279, 289, 346
AfiI CCNNNNNNNGG 2 cut(s) 85, 366
Alw21I GWGCWC 2 cut(s) 232, 244
Alw44I GTGCAC 1 cut(s) 240
ApaLI GTGCAC 1 cut(s) 240
ApeKI GCWGC 1 cut(s) 220
AspLEI GCGC 1 cut(s) 220
AspS9I GGNCC 1 cut(s) 100
AvaII GGWCC 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 244
Bbv12I GWGCWC 2 cut(s) 232, 244
BbvI GCAGC 1 cut(s) 207
BccI CCATC 2 cut(s) 40, 173
BfaI CTAG 2 cut(s) 39, 354
BisI GCNGC 4 cut(s) 64, 94, 173, 221
BlsI GCNGC 4 cut(s) 65, 95, 174, 222
Bme18I GGWCC 1 cut(s) 100
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 1 cut(s) 102
BmsI GCATC 1 cut(s) 239
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 366
Bse3DI GCAATG 1 cut(s) 167
BseGI GGATG 4 cut(s) 51, 184, 254, 448
BseLI CCNNNNNNNGG 2 cut(s) 85, 366
BseMI GCAATG 1 cut(s) 167
BseMII CTCAG 1 cut(s) 245
BseSI GKGCMC 1 cut(s) 244
BseXI GCAGC 1 cut(s) 207
BsgI GTGCAG 1 cut(s) 142
Bsh1236I CGCG 1 cut(s) 246
BsiHKAI GWGCWC 2 cut(s) 232, 244
BslFI GGGAC 1 cut(s) 21
BslI CCNNNNNNNGG 2 cut(s) 85, 366
BsmFI GGGAC 1 cut(s) 21
Bsp1286I GDGCHC 2 cut(s) 232, 244
Bsp143I GATC 2 cut(s) 70, 147
BspACI CCGC 7 cut(s) 63, 93, 172, 246, 279, 289, 346
BspCNI CTCAG 1 cut(s) 244
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 1 cut(s) 102
BsrBI CCGCTC 1 cut(s) 346
BsrDI GCAATG 1 cut(s) 167
BssMI GATC 2 cut(s) 70, 147
BstC8I GCNNGC 2 cut(s) 244, 332
BstDEI CTNAG 3 cut(s) 74, 231, 257
BstEII GGTNACC 1 cut(s) 348
BstF5I GGATG 4 cut(s) 51, 184, 254, 448
BstFNI CGCG 1 cut(s) 246
BstHHI GCGC 1 cut(s) 220
BstKTI GATC 2 cut(s) 73, 150
BstMBI GATC 2 cut(s) 70, 147
BstNSI RCATGY 1 cut(s) 334
BstPI GGTNACC 1 cut(s) 348
BstSLI GKGCMC 1 cut(s) 244
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 1 cut(s) 207
BstXI CCANNNNNNTGG 1 cut(s) 112
BtsCI GGATG 4 cut(s) 51, 184, 254, 448
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 244, 332
CfoI GCGC 1 cut(s) 220
Cfr13I GGNCC 1 cut(s) 100
CseI GACGC 1 cut(s) 18
CviAII CATG 5 cut(s) 13, 97, 136, 275, 331
CviJI RGCY 2 cut(s) 78, 111
CviKI_1 RGCY 2 cut(s) 78, 111
DdeI CTNAG 3 cut(s) 74, 231, 257
DpnI GATC 2 cut(s) 72, 149
DpnII GATC 2 cut(s) 70, 147
Eco47I GGWCC 1 cut(s) 100
Eco91I GGTNACC 1 cut(s) 348
EcoO65I GGTNACC 1 cut(s) 348
FaeI CATG 5 cut(s) 16, 100, 139, 278, 334
FaqI GGGAC 1 cut(s) 21
FatI CATG 5 cut(s) 12, 96, 135, 274, 330
FauNDI CATATG 1 cut(s) 266
Fnu4HI GCNGC 4 cut(s) 64, 94, 173, 221
FokI GGATG 4 cut(s) 58, 191, 261, 455
Fsp4HI GCNGC 4 cut(s) 64, 94, 173, 221
FspBI CTAG 2 cut(s) 39, 354
GlaI GCGC 1 cut(s) 219
GluI GCNGC 4 cut(s) 64, 94, 173, 221
HgaI GACGC 1 cut(s) 18
HhaI GCGC 1 cut(s) 220
Hin1II CATG 5 cut(s) 16, 100, 139, 278, 334
Hin6I GCGC 1 cut(s) 218
HinP1I GCGC 1 cut(s) 218
HincII GTYRAC 1 cut(s) 448
HindII GTYRAC 1 cut(s) 448
Hpy166II GTNNAC 2 cut(s) 242, 448
Hpy188I TCNGA 1 cut(s) 234
Hpy188III TCNNGA 1 cut(s) 6
Hpy8I GTNNAC 2 cut(s) 242, 448
HpyAV CCTTC 6 cut(s) 10, 79, 83, 184, 194, 229
HpyF3I CTNAG 3 cut(s) 74, 231, 257
Hsp92II CATG 5 cut(s) 16, 100, 139, 278, 334
HspAI GCGC 1 cut(s) 218
Kzo9I GATC 2 cut(s) 70, 147
LpnPI CCDG 2 cut(s) 102, 161
Lsp1109I GCAGC 1 cut(s) 207
LweI GCATC 1 cut(s) 239
MaeI CTAG 2 cut(s) 39, 354
MaeIII GTNAC 2 cut(s) 281, 348
MalI GATC 2 cut(s) 72, 149
MbiI CCGCTC 1 cut(s) 346
MboI GATC 2 cut(s) 70, 147
MboII GAAGA 1 cut(s) 312
MhlI GDGCHC 2 cut(s) 232, 244
MluCI AATT 2 cut(s) 372, 384
MseI TTAA 1 cut(s) 420
MslI CAYNNNNRTG 2 cut(s) 247, 269
MvnI CGCG 1 cut(s) 246
NdeI CATATG 1 cut(s) 266
NdeII GATC 2 cut(s) 70, 147
NlaIII CATG 5 cut(s) 16, 100, 139, 278, 334
NlaIV GGNNCC 1 cut(s) 102
NspI RCATGY 1 cut(s) 334
PaeI GCATGC 1 cut(s) 334
PkrI GCNGC 4 cut(s) 65, 95, 174, 222
PspEI GGTNACC 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 102
PspPI GGNCC 1 cut(s) 100
RseI CAYNNNNRTG 2 cut(s) 247, 269
SaqAI TTAA 1 cut(s) 420
SatI GCNGC 4 cut(s) 64, 94, 173, 221
Sau3AI GATC 2 cut(s) 70, 147
Sau96I GGNCC 1 cut(s) 100
SduI GDGCHC 2 cut(s) 232, 244
SetI ASST 6 cut(s) 195, 217, 229, 263, 355, 417
SfaNI GCATC 1 cut(s) 239
SinI GGWCC 1 cut(s) 100
SmiMI CAYNNNNRTG 2 cut(s) 247, 269
SphI GCATGC 1 cut(s) 334
Sse9I AATT 2 cut(s) 372, 384
SsiI CCGC 7 cut(s) 63, 93, 172, 246, 279, 289, 346
SspMI CTAG 2 cut(s) 39, 354
TasI AATT 2 cut(s) 372, 384
TauI GCSGC 3 cut(s) 66, 96, 175
Tru1I TTAA 1 cut(s) 420
Tru9I TTAA 1 cut(s) 420
TscAI CASTG 1 cut(s) 130
TseI GCWGC 1 cut(s) 220
TspDTI ATGAA 1 cut(s) 29
TspRI CASTG 1 cut(s) 130
VneI GTGCAC 1 cut(s) 240
VpaK11BI GGWCC 1 cut(s) 100
XceI RCATGY 1 cut(s) 334
XspI CTAG 2 cut(s) 39, 354
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.