Rmu_sc0002481.1_g000045
ERF Family

DNA RNA polymerases superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002481.1
OG0000385
Physical Location & Seq
Forward (+)
167534 .. 167953
420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002481.1_g000045.1.cds

Sequence Viewer

Length: 420 bp
atggagggaaccatgagggagatggacaccgcattcaagcggtatgtcacggaagtaaatggcaggttagcttccatcttggaagaggtagccagcctaattaatgcggtgaggcaaaatggcgaagaggcaaaagccgatgtcaaagacctggaggaggagatccatgttctaaggagggtgctgaaccatgaaagcccgactgtctcgaaggtcaaggtgtcgaagccaaaagccttccatggtgtccgaaatgcgaaggagttggagaactttctatgggacatggagcaatactttatgagcaagtctccattacaagcatgtatcttgcgggggatgccaaactatggcggcgaactcgggtgcaagatgatgctaagatgggcagaccaagaatcgaagagtgggaaactatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 RVT_1 Retrotrans_gag rve

Protein Analysis

139

Amino Acids

15.85

Weight (kDa)

6.84

Isoelectric Point (pI)

54.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 54
AccB7I CCANNNNNTGG 1 cut(s) 350
AciI CCGC 5 cut(s) 30, 40, 107, 334, 354
AclWI GGATC 1 cut(s) 157
AfiI CCNNNNNNNGG 2 cut(s) 157, 350
AgsI TTSAA 1 cut(s) 37
AjnI CCWGG 1 cut(s) 150
AluBI AGCT 1 cut(s) 71
AluI AGCT 1 cut(s) 71
Alw26I GTCTC 2 cut(s) 211, 315
AlwI GGATC 1 cut(s) 157
Ama87I CYCGRG 1 cut(s) 362
AseI ATTAAT 1 cut(s) 102
AsuHPI GGTGA 1 cut(s) 121
AvaI CYCGRG 1 cut(s) 362
BccI CCATC 3 cut(s) 16, 83, 378
BciT130I CCWGG 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 211, 315
BfuAI ACCTGC 1 cut(s) 54
BisI GCNGC 1 cut(s) 355
BlsI GCNGC 1 cut(s) 356
Bme1390I CCNGG 1 cut(s) 152
BmeT110I CYCGRG 1 cut(s) 362
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 152
BmsI GCATC 2 cut(s) 330, 366
BplI GAGNNNNNCTC 2 cut(s) 295, 327
BpmI CTGGAG 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 241
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 350
BseBI CCWGG 1 cut(s) 152
BseDI CCNNGG 1 cut(s) 241
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 2 cut(s) 157, 350
BseRI GAGGAG 2 cut(s) 170, 173
BsiHKCI CYCGRG 1 cut(s) 362
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 2 cut(s) 157, 350
BsmAI GTCTC 2 cut(s) 211, 315
BsmFI GGGAC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 32
BsoBI CYCGRG 1 cut(s) 362
Bsp143I GATC 1 cut(s) 162
Bsp19I CCATGG 1 cut(s) 241
BspACI CCGC 5 cut(s) 30, 40, 107, 334, 354
BspLI GGNNCC 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 54
BspPI GGATC 1 cut(s) 157
BssECI CCNNGG 1 cut(s) 241
BssMI GATC 1 cut(s) 162
BssT1I CCWWGG 1 cut(s) 241
Bst2UI CCWGG 1 cut(s) 152
Bst4CI ACNGT 1 cut(s) 205
Bst6I CTCTTC 3 cut(s) 78, 120, 398
BstC8I GCNNGC 1 cut(s) 94
BstDEI CTNAG 2 cut(s) 173, 380
BstDSI CCRYGG 1 cut(s) 241
BstENI CCTNNNNNAGG 1 cut(s) 155
BstF5I GGATG 1 cut(s) 345
BstKTI GATC 1 cut(s) 165
BstMAI GTCTC 2 cut(s) 211, 315
BstMBI GATC 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 340
BstNI CCWGG 1 cut(s) 152
BstNSI RCATGY 1 cut(s) 327
BstSCI CCNGG 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 241
BtsCI GGATG 1 cut(s) 345
BveI ACCTGC 1 cut(s) 54
Cac8I GCNNGC 1 cut(s) 94
CviAII CATG 6 cut(s) 13, 167, 191, 242, 286, 324
CviJI RGCY 7 cut(s) 71, 92, 96, 137, 198, 229, 236
CviKI_1 RGCY 7 cut(s) 71, 92, 96, 137, 198, 229, 236
DdeI CTNAG 2 cut(s) 173, 380
DpnI GATC 1 cut(s) 164
DpnII GATC 1 cut(s) 162
Eam1104I CTCTTC 3 cut(s) 78, 120, 398
EarI CTCTTC 3 cut(s) 78, 120, 398
Eco130I CCWWGG 1 cut(s) 241
Eco88I CYCGRG 1 cut(s) 362
EcoNI CCTNNNNNAGG 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 241
FaeI CATG 6 cut(s) 16, 170, 194, 245, 289, 327
FaqI GGGAC 1 cut(s) 296
FatI CATG 6 cut(s) 12, 166, 190, 241, 285, 323
FauI CCCGC 1 cut(s) 327
Fnu4HI GCNGC 1 cut(s) 355
FokI GGATG 1 cut(s) 352
Fsp4HI GCNGC 1 cut(s) 355
GluI GCNGC 1 cut(s) 355
GsuI CTGGAG 1 cut(s) 173
Hin1II CATG 6 cut(s) 16, 170, 194, 245, 289, 327
HinfI GANTC 1 cut(s) 398
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 251
Hpy188III TCNNGA 1 cut(s) 208
HpyAV CCTTC 3 cut(s) 205, 247, 253
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4V TGCA 1 cut(s) 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 340
HpyF3I CTNAG 2 cut(s) 173, 380
Hsp92II CATG 6 cut(s) 16, 170, 194, 245, 289, 327
Kzo9I GATC 1 cut(s) 162
LmnI GCTCC 1 cut(s) 289
LpnPI CCDG 4 cut(s) 49, 106, 137, 164
LweI GCATC 2 cut(s) 330, 366
MaeIII GTNAC 1 cut(s) 46
MalI GATC 1 cut(s) 164
MboI GATC 1 cut(s) 162
MboII GAAGA 3 cut(s) 95, 137, 415
MflI RGATCY 1 cut(s) 162
MluCI AATT 1 cut(s) 99
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 7 cut(s) 9, 79, 105, 121, 148, 151, 171
MseI TTAA 1 cut(s) 102
MspR9I CCNGG 1 cut(s) 152
Mva1269I GAATGC 1 cut(s) 32
MvaI CCWGG 1 cut(s) 152
MwoI GCNNNNNNNGC 1 cut(s) 340
NcoI CCATGG 1 cut(s) 241
NdeII GATC 1 cut(s) 162
NlaIII CATG 6 cut(s) 16, 170, 194, 245, 289, 327
NlaIV GGNNCC 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 46
NspI RCATGY 1 cut(s) 327
PctI GAATGC 1 cut(s) 32
PfeI GAWTC 1 cut(s) 398
PflMI CCANNNNNTGG 1 cut(s) 350
PkrI GCNGC 1 cut(s) 356
PshBI ATTAAT 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 150
PspGI CCWGG 1 cut(s) 150
PspN4I GGNNCC 1 cut(s) 10
PsuI RGATCY 1 cut(s) 162
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 1 cut(s) 355
Sau3AI GATC 1 cut(s) 162
ScrFI CCNGG 1 cut(s) 152
SetI ASST 6 cut(s) 68, 73, 90, 153, 216, 222
SfaNI GCATC 2 cut(s) 330, 366
Sse9I AATT 1 cut(s) 99
SsiI CCGC 5 cut(s) 30, 40, 107, 334, 354
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 205
TaqI TCGA 3 cut(s) 209, 224, 401
TasI AATT 1 cut(s) 99
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 1 cut(s) 398
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseFI GTSAC 1 cut(s) 46
Tsp45I GTSAC 1 cut(s) 46
TspDTI ATGAA 1 cut(s) 207
TspGWI ACGGA 1 cut(s) 65
Van91I CCANNNNNTGG 1 cut(s) 350
VspI ATTAAT 1 cut(s) 102
XagI CCTNNNNNAGG 1 cut(s) 155
XceI RCATGY 1 cut(s) 327
XcmI CCANNNNNNNNNTGG 1 cut(s) 19
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.