Rroxscaffold_4G00327700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000385
Physical Location & Seq
Forward (+)
60557709 .. 60560432
2724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00327700.1

Sequence Viewer

Length: 354 bp
ATGGCAACAAAGTTGAGTGATGGTTGCACCGCCATACATGAAGGCCCTGCGTCACGGATTGAAGTTGCCATTGTTTCCCGGCTTGCCCTAGAGATGGCGGGTGGCAATGATACTTTGAAGGAGAGAGTGGCAAGGGTAGAGGAAATCCTTGGCATGCCGATCGAAGAATTAGAGGCAAGCTTAATTGTTCAAGTGGAACAATTGAAGCAAGAACTAGCATCAATGCATGTTGCATTCGATGGCCACGTGCACGAGATGGAAGAGAGGATGAAGTCGTCCATCCATGAGATTGAAGCCCTTTTGCAAGAGGTGGATGCAAAGTTTGAGGTTCTTGATGCGACATTGGATTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

12.9

Weight (kDa)

4.57

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 30, 98
AcoI YGGCCR 1 cut(s) 241
AcvI CACGTG 1 cut(s) 247
AfiI CCNNNNNNNGG 1 cut(s) 94
AgsI TTSAA 5 cut(s) 62, 118, 191, 205, 293
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
Alw21I GWGCWC 1 cut(s) 252
Alw44I GTGCAC 1 cut(s) 248
AoxI GGCC 2 cut(s) 43, 241
ApaLI GTGCAC 1 cut(s) 248
AspS9I GGNCC 1 cut(s) 44
AsuC2I CCSGG 1 cut(s) 79
BaeGI GKGCMC 1 cut(s) 252
BalI TGGCCA 1 cut(s) 243
BauI CACGAG 1 cut(s) 251
BbrPI CACGTG 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 252
BccI CCATC 5 cut(s) 14, 88, 233, 250, 287
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BcnI CCSGG 1 cut(s) 79
BfaI CTAG 2 cut(s) 89, 215
Bme1390I CCNGG 1 cut(s) 79
BmgT120I GGNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 79
BmsI GCATC 3 cut(s) 227, 304, 325
BpuMI CCSGG 1 cut(s) 79
BsaAI YACGTR 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse3DI GCAATG 1 cut(s) 112
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 3 cut(s) 273, 279, 319
BseLI CCNNNNNNNGG 1 cut(s) 94
BseMI GCAATG 1 cut(s) 112
BseSI GKGCMC 1 cut(s) 252
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 45, 243
BsiEI CGRYCG 1 cut(s) 162
BsiHKAI GWGCWC 1 cut(s) 252
BsiSI CCGG 1 cut(s) 79
BslI CCNNNNNNNGG 1 cut(s) 94
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 2 cut(s) 45, 243
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 1 cut(s) 159
BspACI CCGC 2 cut(s) 30, 98
BspANI GGCC 2 cut(s) 45, 243
BsrDI GCAATG 1 cut(s) 112
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 1 cut(s) 159
BssSI CACGAG 1 cut(s) 251
BssT1I CCWWGG 1 cut(s) 148
Bst2BI CACGAG 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 255
BstBAI YACGTR 1 cut(s) 247
BstC8I GCNNGC 3 cut(s) 84, 155, 178
BstF5I GGATG 3 cut(s) 273, 279, 319
BstKTI GATC 1 cut(s) 162
BstMBI GATC 1 cut(s) 159
BstMCI CGRYCG 1 cut(s) 162
BstNSI RCATGY 2 cut(s) 157, 230
BstSCI CCNGG 1 cut(s) 77
BstSLI GKGCMC 1 cut(s) 252
BsuRI GGCC 2 cut(s) 45, 243
BtsCI GGATG 3 cut(s) 273, 279, 319
Cac8I GCNNGC 3 cut(s) 84, 155, 178
Cfr13I GGNCC 1 cut(s) 44
CseI GACGC 1 cut(s) 39
CviAII CATG 4 cut(s) 38, 154, 227, 284
CviJI RGCY 5 cut(s) 45, 82, 180, 243, 296
CviKI_1 RGCY 5 cut(s) 45, 82, 180, 243, 296
DpnI GATC 1 cut(s) 161
DpnII GATC 1 cut(s) 159
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 1 cut(s) 255
EarI CTCTTC 1 cut(s) 255
Eco130I CCWWGG 1 cut(s) 148
Eco72I CACGTG 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 44
EcoT14I CCWWGG 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 228
ErhI CCWWGG 1 cut(s) 148
FaeI CATG 4 cut(s) 41, 157, 230, 287
FaiI YATR 5 cut(s) 35, 39, 155, 228, 285
FatI CATG 4 cut(s) 37, 153, 226, 283
FauI CCCGC 1 cut(s) 91
FokI GGATG 3 cut(s) 266, 280, 326
FspBI CTAG 2 cut(s) 89, 215
HaeIII GGCC 2 cut(s) 45, 243
HapII CCGG 1 cut(s) 79
HgaI GACGC 1 cut(s) 39
Hin1II CATG 4 cut(s) 41, 157, 230, 287
HindIII AAGCTT 1 cut(s) 178
HpaII CCGG 1 cut(s) 79
Hpy166II GTNNAC 1 cut(s) 250
Hpy188III TCNNGA 1 cut(s) 332
Hpy8I GTNNAC 1 cut(s) 250
HpyAV CCTTC 2 cut(s) 35, 112
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 6 cut(s) 27, 226, 233, 250, 304, 317
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 4 cut(s) 41, 157, 230, 287
Kzo9I GATC 1 cut(s) 159
LpnPI CCDG 2 cut(s) 60, 92
LweI GCATC 3 cut(s) 227, 304, 325
MaeI CTAG 2 cut(s) 89, 215
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 51
MalI GATC 1 cut(s) 161
MboI GATC 1 cut(s) 159
MboII GAAGA 2 cut(s) 176, 272
MfeI CAATTG 1 cut(s) 200
MhlI GDGCHC 1 cut(s) 252
MlsI TGGCCA 1 cut(s) 243
MluCI AATT 3 cut(s) 167, 183, 200
MluNI TGGCCA 1 cut(s) 243
MnlI CCTC 5 cut(s) 133, 166, 258, 301, 319
Mox20I TGGCCA 1 cut(s) 243
Mph1103I ATGCAT 1 cut(s) 228
MscI TGGCCA 1 cut(s) 243
MseI TTAA 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 243
MspI CCGG 1 cut(s) 79
MspR9I CCNGG 1 cut(s) 79
MunI CAATTG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 233
NciI CCSGG 1 cut(s) 79
NdeII GATC 1 cut(s) 159
NlaIII CATG 4 cut(s) 41, 157, 230, 287
NmuCI GTSAC 1 cut(s) 51
NsiI ATGCAT 1 cut(s) 228
NspI RCATGY 2 cut(s) 157, 230
PaeI GCATGC 1 cut(s) 157
PcsI WCGNNNNNNNCGW 1 cut(s) 243
PctI GAATGC 1 cut(s) 233
Ple19I CGATCG 1 cut(s) 162
PmaCI CACGTG 1 cut(s) 247
PmlI CACGTG 1 cut(s) 247
Ppu21I YACGTR 1 cut(s) 247
PspCI CACGTG 1 cut(s) 247
PspPI GGNCC 1 cut(s) 44
PvuI CGATCG 1 cut(s) 162
SaqAI TTAA 1 cut(s) 182
Sau3AI GATC 1 cut(s) 159
Sau96I GGNCC 1 cut(s) 44
ScrFI CCNGG 1 cut(s) 79
SduI GDGCHC 1 cut(s) 252
SetI ASST 4 cut(s) 182, 249, 312, 330
SfaNI GCATC 3 cut(s) 227, 304, 325
SphI GCATGC 1 cut(s) 157
Sse9I AATT 3 cut(s) 167, 183, 200
SsiI CCGC 2 cut(s) 30, 98
SspMI CTAG 2 cut(s) 89, 215
StyD4I CCNGG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 148
TaiI ACGT 1 cut(s) 249
TaqI TCGA 2 cut(s) 162, 237
TasI AATT 3 cut(s) 167, 183, 200
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TseFI GTSAC 1 cut(s) 51
Tsp45I GTSAC 1 cut(s) 51
TspDTI ATGAA 2 cut(s) 54, 284
TspGWI ACGGA 1 cut(s) 70
VneI GTGCAC 1 cut(s) 248
XceI RCATGY 2 cut(s) 157, 230
XspI CTAG 2 cut(s) 89, 215
Zsp2I ATGCAT 1 cut(s) 228
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.