Rh5BG005600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000385
Physical Location & Seq
Forward (+)
440565 .. 447260
6696 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG005600.1

Sequence Viewer

Length: 582 bp
ATGCAATTACCGAATGGACTTTCAAGCAGTGGGCTTTTTTACGGCCCATACGTCAAACGGAAATGGGTTTGCTCCGATCCGACGCACCCTTCCGTCCGGCAACAGTTGCCTTCCTTCCACCGTATAATGAAGCGACTGGGGCTGCCCAACCTAGTCGCGGATGGCAGGGGCAATGATACTTTGAAGGAGAGGGTGGCAAAGGTAGAGGAAGTCCTGGGCCTGCCGATTGGAGATGTTGAGGCAAGCTTAGTTGTTCAAGTGGAACAATTGAAGCAAGAATTGGCATCATTGCGTGTTGCATTTGATGGCCACATCCACGAGGTGGAAGAAAAGATGGAGACGTCCATCCATGAGATCGAAGCCCTTTCGCAAGAGGCGGAGGCAAAGTTTGAGGTTCTTGATGCCGACATTGGACTGCTAAAGCGCTCTAGCATCAATGAATGTGGGACGAGCACAAGAGCCTCAGTATTGTTTCTGCCATTGATCATGGGGCCTCTTCACCCCCCATCGTATCCTATTCTGCTTGTGATTCCGATTGTGCTGGTGCTGGCTATCATTTTCCTCCACCAAGCATCGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

193

Amino Acids

21.32

Weight (kDa)

5.97

Isoelectric Point (pI)

47.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 344
AccB7I CCANNNNNTGG 1 cut(s) 322
AccII CGCG 1 cut(s) 158
AciI CCGC 2 cut(s) 158, 377
AclWI GGATC 1 cut(s) 71
AcoI YGGCCR 1 cut(s) 307
AcyI GRCGYC 1 cut(s) 341
AdeI CACNNNGTG 1 cut(s) 322
AfeI AGCGCT 1 cut(s) 425
AfiI CCNNNNNNNGG 2 cut(s) 157, 322
AgsI TTSAA 4 cut(s) 24, 184, 257, 271
AjnI CCWGG 1 cut(s) 213
AjuI GAANNNNNNNTTGG 2 cut(s) 263, 295
AluBI AGCT 1 cut(s) 246
AluI AGCT 1 cut(s) 246
Alw21I GWGCWC 1 cut(s) 455
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 1 cut(s) 71
Aor51HI AGCGCT 1 cut(s) 425
AoxI GGCC 4 cut(s) 43, 217, 307, 491
ApeKI GCWGC 1 cut(s) 142
AspLEI GCGC 1 cut(s) 426
AspS9I GGNCC 3 cut(s) 44, 217, 491
AsuHPI GGTGA 1 cut(s) 491
BalI TGGCCA 1 cut(s) 309
BauI CACGAG 1 cut(s) 317
Bbv12I GWGCWC 1 cut(s) 455
BbvI GCAGC 1 cut(s) 129
BccI CCATC 5 cut(s) 155, 299, 328, 353, 514
BceAI ACGGC 1 cut(s) 58
BciT130I CCWGG 1 cut(s) 215
BciVI GTATCC 1 cut(s) 522
BclI TGATCA 1 cut(s) 483
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 2 cut(s) 152, 429
BfoI RGCGCY 1 cut(s) 427
BfuI GTATCC 1 cut(s) 522
BisI GCNGC 1 cut(s) 143
BlsI GCNGC 1 cut(s) 144
Bme1390I CCNGG 1 cut(s) 215
BmgT120I GGNCC 3 cut(s) 44, 217, 491
BmiI GGNNCC 1 cut(s) 492
BmrFI CCNGG 1 cut(s) 215
BmrI ACTGGG 1 cut(s) 146
BmsI GCATC 3 cut(s) 293, 391, 441
BmuI ACTGGG 1 cut(s) 146
BsaHI GRCGYC 1 cut(s) 341
BsaJI CCNNGG 1 cut(s) 214
BsaXI ACNNNNNCTCC 2 cut(s) 371, 401
Bsc4I CCNNNNNNNGG 2 cut(s) 157, 322
Bse1I ACTGG 1 cut(s) 141
Bse3DI GCAATG 2 cut(s) 178, 287
BseBI CCWGG 1 cut(s) 215
BseDI CCNNGG 1 cut(s) 214
BseGI GGATG 3 cut(s) 166, 312, 345
BseLI CCNNNNNNNGG 2 cut(s) 157, 322
BseMI GCAATG 2 cut(s) 178, 287
BseMII CTCAG 1 cut(s) 477
BseNI ACTGG 1 cut(s) 141
BseXI GCAGC 1 cut(s) 129
Bsh1236I CGCG 1 cut(s) 158
BshFI GGCC 4 cut(s) 45, 219, 309, 493
BsiHKAI GWGCWC 1 cut(s) 455
BsiSI CCGG 1 cut(s) 97
BslFI GGGAC 1 cut(s) 460
BslI CCNNNNNNNGG 2 cut(s) 157, 322
BsmAI GTCTC 1 cut(s) 332
BsmBI CGTCTC 1 cut(s) 332
BsmFI GGGAC 1 cut(s) 460
BsnI GGCC 4 cut(s) 45, 219, 309, 493
Bsp1286I GDGCHC 1 cut(s) 455
Bsp143I GATC 3 cut(s) 76, 354, 483
BspACI CCGC 2 cut(s) 158, 377
BspANI GGCC 4 cut(s) 45, 219, 309, 493
BspCNI CTCAG 1 cut(s) 476
BspFNI CGCG 1 cut(s) 158
BspLI GGNNCC 1 cut(s) 492
BspPI GGATC 1 cut(s) 71
BsrDI GCAATG 2 cut(s) 178, 287
BsrI ACTGG 1 cut(s) 141
BssECI CCNNGG 1 cut(s) 214
BssMI GATC 3 cut(s) 76, 354, 483
BssNI GRCGYC 1 cut(s) 341
BssSI CACGAG 1 cut(s) 317
Bst2BI CACGAG 1 cut(s) 317
Bst2UI CCWGG 1 cut(s) 215
Bst4CI ACNGT 2 cut(s) 105, 122
Bst6I CTCTTC 1 cut(s) 501
BstACI GRCGYC 1 cut(s) 341
BstAPI GCANNNNNTGC 1 cut(s) 106
BstC8I GCNNGC 3 cut(s) 221, 244, 549
BstDEI CTNAG 2 cut(s) 247, 463
BstF5I GGATG 3 cut(s) 166, 312, 345
BstFNI CGCG 1 cut(s) 158
BstH2I RGCGCY 1 cut(s) 427
BstHHI GCGC 1 cut(s) 426
BstKTI GATC 3 cut(s) 79, 357, 486
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 3 cut(s) 76, 354, 483
BstMWI GCNNNNNNNGC 2 cut(s) 106, 139
BstNI CCWGG 1 cut(s) 215
BstSCI CCNGG 1 cut(s) 213
BstUI CGCG 1 cut(s) 158
BstV1I GCAGC 1 cut(s) 129
BsuI GTATCC 1 cut(s) 522
BsuRI GGCC 4 cut(s) 45, 219, 309, 493
BtsCI GGATG 3 cut(s) 166, 312, 345
BtsI GCAGTG 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 34
Cac8I GCNNGC 3 cut(s) 221, 244, 549
CfoI GCGC 1 cut(s) 426
Cfr13I GGNCC 3 cut(s) 44, 217, 491
CseI GACGC 1 cut(s) 91
CspCI CAANNNNNGTGG 2 cut(s) 424, 459
CviAII CATG 2 cut(s) 350, 487
DdeI CTNAG 2 cut(s) 247, 463
DpnI GATC 3 cut(s) 78, 356, 485
DpnII GATC 3 cut(s) 76, 354, 483
DraIII CACNNNGTG 1 cut(s) 322
EaeI YGGCCR 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 501
EarI CTCTTC 1 cut(s) 501
EciI GGCGGA 1 cut(s) 392
Eco47III AGCGCT 1 cut(s) 425
EcoO109I RGGNCCY 1 cut(s) 491
EcoRII CCWGG 1 cut(s) 213
Esp3I CGTCTC 1 cut(s) 332
FaeI CATG 2 cut(s) 353, 490
FaiI YATR 4 cut(s) 49, 125, 351, 488
FaqI GGGAC 1 cut(s) 460
FatI CATG 2 cut(s) 349, 486
FbaI TGATCA 1 cut(s) 483
Fnu4HI GCNGC 1 cut(s) 143
FokI GGATG 3 cut(s) 173, 299, 332
Fsp4HI GCNGC 1 cut(s) 143
FspBI CTAG 2 cut(s) 152, 429
GlaI GCGC 1 cut(s) 425
GluI GCNGC 1 cut(s) 143
HaeII RGCGCY 1 cut(s) 427
HaeIII GGCC 4 cut(s) 45, 219, 309, 493
HapII CCGG 1 cut(s) 97
HgaI GACGC 1 cut(s) 91
HhaI GCGC 1 cut(s) 426
Hin1I GRCGYC 1 cut(s) 341
Hin1II CATG 2 cut(s) 353, 490
Hin6I GCGC 1 cut(s) 424
HinP1I GCGC 1 cut(s) 424
HindIII AAGCTT 1 cut(s) 244
HinfI GANTC 1 cut(s) 529
HpaII CCGG 1 cut(s) 97
HphI GGTGA 1 cut(s) 491
Hpy188I TCNGA 3 cut(s) 76, 81, 534
Hpy188III TCNNGA 1 cut(s) 398
Hpy99I CGWCG 1 cut(s) 85
HpyAV CCTTC 4 cut(s) 99, 120, 124, 178
HpyCH4III ACNGT 2 cut(s) 105, 122
HpyCH4IV ACGT 2 cut(s) 51, 341
HpyCH4V TGCA 2 cut(s) 4, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 106, 139
HpyF3I CTNAG 2 cut(s) 247, 463
HpySE526I ACGT 2 cut(s) 51, 341
Hsp92I GRCGYC 1 cut(s) 341
Hsp92II CATG 2 cut(s) 353, 490
HspAI GCGC 1 cut(s) 424
Ksp22I TGATCA 1 cut(s) 483
Kzo9I GATC 3 cut(s) 76, 354, 483
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 8 cut(s) 110, 122, 151, 200, 227, 233, 527, 533
Lsp1109I GCAGC 1 cut(s) 129
LweI GCATC 3 cut(s) 293, 391, 441
MaeI CTAG 2 cut(s) 152, 429
MaeII ACGT 2 cut(s) 51, 341
MalI GATC 3 cut(s) 78, 356, 485
MboI GATC 3 cut(s) 76, 354, 483
MboII GAAGA 2 cut(s) 338, 488
MfeI CAATTG 1 cut(s) 266
MhlI GDGCHC 1 cut(s) 455
MlsI TGGCCA 1 cut(s) 309
MluCI AATT 3 cut(s) 5, 266, 278
MluNI TGGCCA 1 cut(s) 309
MmeI TCCRAC 1 cut(s) 104
Mox20I TGGCCA 1 cut(s) 309
MscI TGGCCA 1 cut(s) 309
MslI CAYNNNNRTG 1 cut(s) 577
Msp20I TGGCCA 1 cut(s) 309
MspI CCGG 1 cut(s) 97
MspR9I CCNGG 1 cut(s) 215
MunI CAATTG 1 cut(s) 266
MvaI CCWGG 1 cut(s) 215
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 2 cut(s) 106, 139
NdeII GATC 3 cut(s) 76, 354, 483
NlaIII CATG 2 cut(s) 353, 490
NlaIV GGNNCC 1 cut(s) 492
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PfeI GAWTC 1 cut(s) 529
PflMI CCANNNNNTGG 1 cut(s) 322
PkrI GCNGC 1 cut(s) 144
Psp6I CCWGG 1 cut(s) 213
PspGI CCWGG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 492
PspPI GGNCC 3 cut(s) 44, 217, 491
RseI CAYNNNNRTG 1 cut(s) 577
SatI GCNGC 1 cut(s) 143
Sau3AI GATC 3 cut(s) 76, 354, 483
Sau96I GGNCC 3 cut(s) 44, 217, 491
ScrFI CCNGG 1 cut(s) 215
SduI GDGCHC 1 cut(s) 455
SetI ASST 7 cut(s) 54, 153, 204, 248, 324, 344, 396
SfaNI GCATC 3 cut(s) 293, 391, 441
SmiMI CAYNNNNRTG 1 cut(s) 577
Sse9I AATT 3 cut(s) 5, 266, 278
SsiI CCGC 2 cut(s) 158, 377
SspMI CTAG 2 cut(s) 152, 429
StyD4I CCNGG 1 cut(s) 213
TaaI ACNGT 2 cut(s) 105, 122
TaiI ACGT 2 cut(s) 54, 344
TaqI TCGA 2 cut(s) 357, 575
TasI AATT 3 cut(s) 5, 266, 278
TfiI GAWTC 1 cut(s) 529
TscAI CASTG 1 cut(s) 34
TseI GCWGC 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 143, 453
TspGWI ACGGA 2 cut(s) 73, 82
TspRI CASTG 1 cut(s) 34
Van91I CCANNNNNTGG 1 cut(s) 322
XspI CTAG 2 cut(s) 152, 429
ZraI GACGTC 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.