Rw0G003820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00143
OG0000385
Physical Location & Seq
Forward (+)
764 .. 2551
1788 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G003820.1

Sequence Viewer

Length: 372 bp
ATGCGTGTTGCATTCAATGGCCATGTGCATGAGATGGAAGAGAGGATGAAGACGTCCATCCATGAGATGGAGGCCCTTTCGCAAGAGGCGGAGGCAAAGTTTGAGGTTCTTGATGCCGACATTGGATTGCTAAAGCGCGCTAGCATCGATGAAGCCGAGGAAGATGTCACCACCAACAACAATGAAGGCCAAAGCGGAGGTGGGGCAGATATGGGAGAGATTGAAGTTAAGATGCTTGGTTCTGGGGTGATTGGAGGTGATGAAGGTGGGGAGGTGGCCATTGAAGGCCACTCCTTGAAAAACTCGCTGGAGGAAGCAAGGCTCAACCTTAAGGAGAACAAGGTCGAGGCACTGGTAAAGACAAACGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

13.27

Weight (kDa)

4.53

Isoelectric Point (pI)

35.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 56
AccB7I CCANNNNNTGG 1 cut(s) 67
AccII CGCG 1 cut(s) 138
AciI CCGC 2 cut(s) 89, 195
AcoI YGGCCR 2 cut(s) 19, 276
AcyI GRCGYC 1 cut(s) 53
AfiI CCNNNNNNNGG 1 cut(s) 67
AflII CTTAAG 1 cut(s) 329
AgsI TTSAA 4 cut(s) 16, 224, 284, 298
AoxI GGCC 5 cut(s) 19, 72, 187, 276, 286
AspLEI GCGC 2 cut(s) 138, 140
AspS9I GGNCC 1 cut(s) 73
AsuHPI GGTGA 3 cut(s) 160, 259, 269
AsuNHI GCTAGC 1 cut(s) 140
BalI TGGCCA 2 cut(s) 21, 278
BbsI GAAGAC 1 cut(s) 56
BccI CCATC 3 cut(s) 28, 61, 65
BfaI CTAG 1 cut(s) 141
BfrI CTTAAG 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 73
BmsI GCATC 3 cut(s) 103, 153, 222
BmtI GCTAGC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 56
BpmI CTGGAG 1 cut(s) 329
Bsa29I ATCGAT 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 53
BsaJI CCNNGG 1 cut(s) 156
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 357
BseCI ATCGAT 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 2 cut(s) 51, 57
BseLI CCNNNNNNNGG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 357
BsePI GCGCGC 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 5 cut(s) 21, 74, 189, 278, 288
BshVI ATCGAT 1 cut(s) 147
BslI CCNNNNNNNGG 1 cut(s) 67
BsmI GAATGC 1 cut(s) 11
BsnI GGCC 5 cut(s) 21, 74, 189, 278, 288
BspACI CCGC 2 cut(s) 89, 195
BspANI GGCC 5 cut(s) 21, 74, 189, 278, 288
BspDI ATCGAT 1 cut(s) 147
BspFNI CGCG 1 cut(s) 138
BspOI GCTAGC 1 cut(s) 144
BspTI CTTAAG 1 cut(s) 329
BsrI ACTGG 1 cut(s) 357
BssECI CCNNGG 1 cut(s) 156
BssHII GCGCGC 1 cut(s) 136
BssNI GRCGYC 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 53
BstAFI CTTAAG 1 cut(s) 329
BstC8I GCNNGC 2 cut(s) 138, 142
BstF5I GGATG 2 cut(s) 51, 57
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 2 cut(s) 138, 140
BstUI CGCG 1 cut(s) 138
BstV2I GAAGAC 1 cut(s) 56
Bsu15I ATCGAT 1 cut(s) 147
BsuRI GGCC 5 cut(s) 21, 74, 189, 278, 288
BsuTUI ATCGAT 1 cut(s) 147
BtsCI GGATG 2 cut(s) 51, 57
BtsIMutI CAGTG 1 cut(s) 350
Cac8I GCNNGC 2 cut(s) 138, 142
CfoI GCGC 2 cut(s) 138, 140
Cfr13I GGNCC 1 cut(s) 73
ClaI ATCGAT 1 cut(s) 147
CviAII CATG 3 cut(s) 23, 29, 62
CviJI RGCY 7 cut(s) 21, 74, 155, 189, 278, 288, 322
CviKI_1 RGCY 7 cut(s) 21, 74, 155, 189, 278, 288, 322
EaeI YGGCCR 2 cut(s) 19, 276
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
EciI GGCGGA 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 73
FaeI CATG 3 cut(s) 26, 32, 65
FaiI YATR 5 cut(s) 24, 30, 63, 212, 370
FatI CATG 3 cut(s) 22, 28, 61
FokI GGATG 2 cut(s) 44, 58
FspBI CTAG 1 cut(s) 141
GlaI GCGC 2 cut(s) 137, 139
GsuI CTGGAG 1 cut(s) 329
HaeIII GGCC 5 cut(s) 21, 74, 189, 278, 288
HhaI GCGC 2 cut(s) 138, 140
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 3 cut(s) 26, 32, 65
Hin6I GCGC 2 cut(s) 136, 138
HinP1I GCGC 2 cut(s) 136, 138
HphI GGTGA 3 cut(s) 160, 259, 269
Hpy188III TCNNGA 1 cut(s) 110
HpyAV CCTTC 3 cut(s) 179, 257, 278
HpyCH4IV ACGT 2 cut(s) 53, 366
HpyCH4V TGCA 2 cut(s) 11, 28
HpySE526I ACGT 2 cut(s) 53, 366
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 3 cut(s) 26, 32, 65
HspAI GCGC 2 cut(s) 136, 138
LpnPI CCDG 3 cut(s) 228, 293, 338
LweI GCATC 3 cut(s) 103, 153, 222
MaeI CTAG 1 cut(s) 141
MaeII ACGT 2 cut(s) 53, 366
MaeIII GTNAC 1 cut(s) 166
MboII GAAGA 3 cut(s) 50, 61, 173
MlsI TGGCCA 2 cut(s) 21, 278
MluNI TGGCCA 2 cut(s) 21, 278
Mox20I TGGCCA 2 cut(s) 21, 278
MscI TGGCCA 2 cut(s) 21, 278
MseI TTAA 2 cut(s) 228, 330
MslI CAYNNNNRTG 1 cut(s) 27
Msp20I TGGCCA 2 cut(s) 21, 278
MspCI CTTAAG 1 cut(s) 329
Mva1269I GAATGC 1 cut(s) 11
MvnI CGCG 1 cut(s) 138
NheI GCTAGC 1 cut(s) 140
NlaIII CATG 3 cut(s) 26, 32, 65
NmeAIII GCCGAG 1 cut(s) 181
NmuCI GTSAC 1 cut(s) 166
PauI GCGCGC 1 cut(s) 136
PcsI WCGNNNNNNNCGW 1 cut(s) 153
PctI GAATGC 1 cut(s) 11
PflMI CCANNNNNTGG 1 cut(s) 67
PspPI GGNCC 1 cut(s) 73
PteI GCGCGC 1 cut(s) 136
RseI CAYNNNNRTG 1 cut(s) 27
SaqAI TTAA 2 cut(s) 228, 330
Sau96I GGNCC 1 cut(s) 73
SetI ASST 9 cut(s) 56, 108, 202, 259, 268, 276, 330, 345, 369
SfaNI GCATC 3 cut(s) 103, 153, 222
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 329
SmoI CTYRAG 1 cut(s) 329
SsiI CCGC 2 cut(s) 89, 195
SspMI CTAG 1 cut(s) 141
TaiI ACGT 2 cut(s) 56, 369
TaqI TCGA 2 cut(s) 147, 345
Tru1I TTAA 2 cut(s) 228, 330
Tru9I TTAA 2 cut(s) 228, 330
TscAI CASTG 1 cut(s) 357
TseFI GTSAC 1 cut(s) 166
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 4 cut(s) 62, 165, 198, 276
TspRI CASTG 1 cut(s) 357
Van91I CCANNNNNTGG 1 cut(s) 67
Vha464I CTTAAG 1 cut(s) 329
XcmI CCANNNNNNNNNTGG 2 cut(s) 64, 197
XspI CTAG 1 cut(s) 141
ZraI GACGTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.