FvH4_5g30921

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000385
Physical Location & Seq
Forward (+)
21826422 .. 21830795
4374 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g30921.t1

Sequence Viewer

Length: 417 bp
ATGCTTGGTGAACTTGCGGGAGTCCCTGACAGATTGATTGACATCACCTCCACGCTAGACCGTGTCGACCTGGATGAACTGGCGACACGAGTCAATGACCTTGGGGAATTGAGAGGGCGAGTTGTATCCCTAGACCGCGTCGACCTGGATGAGTTGGCGGCGCGAGTCAATGACCTTGAAAGACTGAAAGGGCAAGTTACGGCCCTTGAAAAGATGAAAGCTCCAAGACTCGATGTAGAGACCGAGAGAGATGGAGGTTCTGTTTCACAAGAGCAGATGGGGGCGATGGGTGATGCCCTCGAAACTCTACAAGTGACTATGGACACCATGGCTGAGGATCCAAGTGAGAATTTGGCCGATATGCTCTTTGTAGGGGAGTTCCTAGTCGGCGACGGTTGGACTAAGGAACTAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.13

Weight (kDa)

4.15

Isoelectric Point (pI)

15.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 66, 141
AccII CGCG 2 cut(s) 138, 163
AciI CCGC 3 cut(s) 17, 136, 158
AclWI GGATC 2 cut(s) 332, 345
AcoI YGGCCR 1 cut(s) 354
AcsI RAATTY 1 cut(s) 349
AgsI TTSAA 2 cut(s) 179, 209
AhlI ACTAGT 1 cut(s) 409
AjnI CCWGG 2 cut(s) 69, 144
AluBI AGCT 1 cut(s) 221
AluI AGCT 1 cut(s) 221
Alw26I GTCTC 1 cut(s) 233
AlwI GGATC 2 cut(s) 332, 345
AoxI GGCC 2 cut(s) 201, 354
ApoI RAATTY 1 cut(s) 349
AspLEI GCGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 3 cut(s) 20, 37, 302
BamHI GGATCC 1 cut(s) 337
BauI CACGAG 1 cut(s) 87
BbvCI CCTCAGC 1 cut(s) 333
BccI CCATC 3 cut(s) 245, 271, 280
BceAI ACGGC 1 cut(s) 216
BciT130I CCWGG 2 cut(s) 71, 146
BciVI GTATCC 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 233
BcuI ACTAGT 1 cut(s) 409
BfaI CTAG 4 cut(s) 56, 131, 383, 410
BfuI GTATCC 1 cut(s) 136
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme1390I CCNGG 2 cut(s) 71, 146
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 339
BmrFI CCNGG 2 cut(s) 71, 146
BmsI GCATC 1 cut(s) 283
BoxI GACNNNNGTC 1 cut(s) 89
Bpu10I CCTNAGC 1 cut(s) 333
BsaBI GATNNNNATC 1 cut(s) 41
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 100, 327
BsaXI ACNNNNNCTCC 4 cut(s) 32, 62, 246, 276
Bse1I ACTGG 1 cut(s) 84
Bse8I GATNNNNATC 1 cut(s) 41
BseBI CCWGG 2 cut(s) 71, 146
BseDI CCNNGG 2 cut(s) 100, 327
BseGI GGATG 2 cut(s) 79, 154
BseJI GATNNNNATC 1 cut(s) 41
BseMII CTCAG 1 cut(s) 324
BseNI ACTGG 1 cut(s) 84
Bsh1236I CGCG 2 cut(s) 138, 163
BshFI GGCC 2 cut(s) 203, 356
BslFI GGGAC 1 cut(s) 8
BsmAI GTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 8
BsnI GGCC 2 cut(s) 203, 356
Bso31I GGTCTC 1 cut(s) 233
Bsp143I GATC 1 cut(s) 337
Bsp19I CCATGG 1 cut(s) 327
BspACI CCGC 3 cut(s) 17, 136, 158
BspANI GGCC 2 cut(s) 203, 356
BspCNI CTCAG 1 cut(s) 325
BspFNI CGCG 2 cut(s) 138, 163
BspLI GGNNCC 1 cut(s) 339
BspPI GGATC 2 cut(s) 332, 345
BspTNI GGTCTC 1 cut(s) 233
BsrI ACTGG 1 cut(s) 84
BssECI CCNNGG 2 cut(s) 100, 327
BssMI GATC 1 cut(s) 337
BssSI CACGAG 1 cut(s) 87
BssT1I CCWWGG 2 cut(s) 100, 327
Bst2BI CACGAG 1 cut(s) 87
Bst2UI CCWGG 2 cut(s) 71, 146
Bst4CI ACNGT 2 cut(s) 62, 395
BstDEI CTNAG 2 cut(s) 333, 402
BstDSI CCRYGG 1 cut(s) 327
BstF5I GGATG 2 cut(s) 79, 154
BstFNI CGCG 2 cut(s) 138, 163
BstHHI GCGC 1 cut(s) 163
BstKTI GATC 1 cut(s) 340
BstMAI GTCTC 1 cut(s) 233
BstMBI GATC 1 cut(s) 337
BstNI CCWGG 2 cut(s) 71, 146
BstPAI GACNNNNGTC 1 cut(s) 89
BstSCI CCNGG 2 cut(s) 69, 144
BstUI CGCG 2 cut(s) 138, 163
BstX2I RGATCY 1 cut(s) 337
BstYI RGATCY 1 cut(s) 337
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 2 cut(s) 203, 356
BtgI CCRYGG 1 cut(s) 327
BtgZI GCGATG 1 cut(s) 299
BtsCI GGATG 2 cut(s) 79, 154
CfoI GCGC 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 202
CseI GACGC 1 cut(s) 127
CviAII CATG 1 cut(s) 328
CviJI RGCY 4 cut(s) 203, 221, 332, 356
CviKI_1 RGCY 4 cut(s) 203, 221, 332, 356
DdeI CTNAG 2 cut(s) 333, 402
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
EaeI YGGCCR 1 cut(s) 354
Eco130I CCWWGG 2 cut(s) 100, 327
Eco31I GGTCTC 1 cut(s) 233
EcoRII CCWGG 2 cut(s) 69, 144
EcoT14I CCWWGG 2 cut(s) 100, 327
ErhI CCWWGG 2 cut(s) 100, 327
FaeI CATG 1 cut(s) 331
FaiI YATR 4 cut(s) 320, 329, 362, 415
FaqI GGGAC 1 cut(s) 8
FatI CATG 1 cut(s) 327
FauI CCCGC 1 cut(s) 10
FblI GTMKAC 2 cut(s) 66, 141
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 2 cut(s) 86, 161
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 4 cut(s) 56, 131, 383, 410
GlaI GCGC 1 cut(s) 162
GluI GCNGC 1 cut(s) 159
HaeIII GGCC 2 cut(s) 203, 356
HgaI GACGC 1 cut(s) 127
HhaI GCGC 1 cut(s) 163
Hin1II CATG 1 cut(s) 331
Hin6I GCGC 1 cut(s) 161
HinP1I GCGC 1 cut(s) 161
HincII GTYRAC 2 cut(s) 67, 142
HindII GTYRAC 2 cut(s) 67, 142
HinfI GANTC 4 cut(s) 21, 90, 165, 228
HphI GGTGA 3 cut(s) 20, 37, 302
Hpy166II GTNNAC 3 cut(s) 11, 67, 142
Hpy8I GTNNAC 3 cut(s) 11, 67, 142
Hpy99I CGWCG 2 cut(s) 143, 395
HpyCH4III ACNGT 2 cut(s) 62, 395
HpyF3I CTNAG 2 cut(s) 333, 402
Hsp92II CATG 1 cut(s) 331
HspAI GCGC 1 cut(s) 161
Kzo9I GATC 1 cut(s) 337
LmnI GCTCC 1 cut(s) 226
LpnPI CCDG 6 cut(s) 39, 56, 65, 83, 131, 158
LweI GCATC 1 cut(s) 283
MaeI CTAG 4 cut(s) 56, 131, 383, 410
MaeIII GTNAC 2 cut(s) 196, 313
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MflI RGATCY 1 cut(s) 337
MluCI AATT 2 cut(s) 107, 349
MlyI GAGTC 4 cut(s) 30, 99, 174, 222
MmeI TCCRAC 1 cut(s) 377
MnlI CCTC 5 cut(s) 58, 107, 248, 308, 328
MspR9I CCNGG 2 cut(s) 71, 146
MvaI CCWGG 2 cut(s) 71, 146
MvnI CGCG 2 cut(s) 138, 163
NcoI CCATGG 1 cut(s) 327
NdeII GATC 1 cut(s) 337
NlaIII CATG 1 cut(s) 331
NlaIV GGNNCC 1 cut(s) 339
NmuCI GTSAC 1 cut(s) 313
PflFI GACNNNGTC 2 cut(s) 62, 137
PkrI GCNGC 1 cut(s) 160
PleI GAGTC 4 cut(s) 29, 98, 173, 222
PpsI GAGTC 4 cut(s) 29, 98, 173, 222
PshAI GACNNNNGTC 1 cut(s) 89
Psp6I CCWGG 2 cut(s) 69, 144
PspGI CCWGG 2 cut(s) 69, 144
PspN4I GGNNCC 1 cut(s) 339
PspPI GGNCC 1 cut(s) 202
PsuI RGATCY 1 cut(s) 337
PsyI GACNNNGTC 2 cut(s) 62, 137
SalI GTCGAC 2 cut(s) 65, 140
SatI GCNGC 1 cut(s) 159
Sau3AI GATC 1 cut(s) 337
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 4 cut(s) 30, 99, 174, 222
ScrFI CCNGG 2 cut(s) 71, 146
SetI ASST 7 cut(s) 50, 72, 102, 147, 177, 223, 259
SfaNI GCATC 1 cut(s) 283
SpeI ACTAGT 1 cut(s) 409
Sse9I AATT 2 cut(s) 107, 349
SsiI CCGC 3 cut(s) 17, 136, 158
SspMI CTAG 4 cut(s) 56, 131, 383, 410
StyD4I CCNGG 2 cut(s) 69, 144
StyI CCWWGG 2 cut(s) 100, 327
TaaI ACNGT 2 cut(s) 62, 395
TaqI TCGA 4 cut(s) 66, 141, 231, 300
TaqII GACCGA 1 cut(s) 257
TasI AATT 2 cut(s) 107, 349
TauI GCSGC 1 cut(s) 161
TseFI GTSAC 1 cut(s) 313
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 2 cut(s) 90, 230
Tth111I GACNNNGTC 2 cut(s) 62, 137
XapI RAATTY 1 cut(s) 349
XmiI GTMKAC 2 cut(s) 66, 141
XspI CTAG 4 cut(s) 56, 131, 383, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.