RLG00000030342

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Forward (+)
59832731 .. 59835870
3140 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030342

Sequence Viewer

Length: 351 bp
ATGAAATTAGATCAAACAACTGAAAACGCCCCTCTTTCAAAATTCAAACTTCTCTCTTCTTCACAGCACATCTCTCAAACCAAAACCACTGAACTGAAAAATCCAGCGCCAAATCCAACATCAACCTCTTCTATTCGTTCACTATACTGCTGGCGAAGATGGAGGCTAGGTGGAAGACGGAGTCTCTGCGACGGTCGACGGCAGCGGCAGCGGCACGACGACCTCGTCTCGTTCTCGCAACATCACTCTGTCAGTCACTCAATCTCGGTTGATTTGATCTGCAAGCTTGAAATTTTATGTACTTGTTGCATCTTTTGGTGGCGGAGCATAAGAAAGAAAAGAAAAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.63

Weight (kDa)

10.41

Isoelectric Point (pI)

75.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 224
AccI GTMKAC 1 cut(s) 196
AciI CCGC 3 cut(s) 205, 211, 322
AcsI RAATTY 2 cut(s) 41, 291
AfaI GTAC 1 cut(s) 301
AgsI TTSAA 3 cut(s) 39, 46, 290
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
Alw26I GTCTC 2 cut(s) 188, 232
ApeKI GCWGC 2 cut(s) 202, 208
ApoI RAATTY 2 cut(s) 41, 291
AspLEI GCGC 1 cut(s) 109
BbsI GAAGAC 1 cut(s) 181
BbvI GCAGC 2 cut(s) 214, 220
BccI CCATC 1 cut(s) 153
BceAI ACGGC 1 cut(s) 215
BcoDI GTCTC 2 cut(s) 188, 232
BfaI CTAG 1 cut(s) 167
BfoI RGCGCY 1 cut(s) 110
BisI GCNGC 4 cut(s) 203, 206, 209, 212
BlsI GCNGC 4 cut(s) 204, 207, 210, 213
BmsI GCATC 1 cut(s) 318
BpiI GAAGAC 1 cut(s) 181
BsaXI ACNNNNNCTCC 2 cut(s) 154, 184
BseXI GCAGC 2 cut(s) 214, 220
Bsh1285I CGRYCG 1 cut(s) 196
BsiEI CGRYCG 1 cut(s) 196
BsmAI GTCTC 2 cut(s) 188, 232
BsmBI CGTCTC 1 cut(s) 232
Bsp143I GATC 2 cut(s) 10, 276
BspACI CCGC 3 cut(s) 205, 211, 322
BssMI GATC 2 cut(s) 10, 276
Bst4CI ACNGT 1 cut(s) 194
Bst6I CTCTTC 2 cut(s) 61, 133
BstC8I GCNNGC 2 cut(s) 152, 284
BstH2I RGCGCY 1 cut(s) 110
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 2 cut(s) 13, 279
BstMAI GTCTC 2 cut(s) 188, 232
BstMBI GATC 2 cut(s) 10, 276
BstMCI CGRYCG 1 cut(s) 196
BstMWI GCNNNNNNNGC 2 cut(s) 208, 211
BstV1I GCAGC 2 cut(s) 214, 220
BstV2I GAAGAC 1 cut(s) 181
BtsIMutI CAGTG 1 cut(s) 87
Cac8I GCNNGC 2 cut(s) 152, 284
CfoI GCGC 1 cut(s) 109
Csp6I GTAC 1 cut(s) 300
CviJI RGCY 2 cut(s) 166, 286
CviKI_1 RGCY 2 cut(s) 166, 286
CviQI GTAC 1 cut(s) 300
DpnI GATC 2 cut(s) 12, 278
DpnII GATC 2 cut(s) 10, 276
DrdI GACNNNNNNGTC 1 cut(s) 224
DseDI GACNNNNNNGTC 1 cut(s) 224
Eam1104I CTCTTC 2 cut(s) 61, 133
EarI CTCTTC 2 cut(s) 61, 133
EciI GGCGGA 1 cut(s) 337
Esp3I CGTCTC 1 cut(s) 232
FaiI YATR 3 cut(s) 145, 298, 329
FblI GTMKAC 1 cut(s) 196
Fnu4HI GCNGC 4 cut(s) 203, 206, 209, 212
Fsp4HI GCNGC 4 cut(s) 203, 206, 209, 212
FspBI CTAG 1 cut(s) 167
GlaI GCGC 1 cut(s) 108
GluI GCNGC 4 cut(s) 203, 206, 209, 212
HaeII RGCGCY 1 cut(s) 110
HhaI GCGC 1 cut(s) 109
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HincII GTYRAC 1 cut(s) 197
HindII GTYRAC 1 cut(s) 197
HindIII AAGCTT 1 cut(s) 284
HinfI GANTC 1 cut(s) 181
Hpy166II GTNNAC 2 cut(s) 140, 197
Hpy8I GTNNAC 2 cut(s) 140, 197
Hpy99I CGWCG 3 cut(s) 194, 201, 221
HpyCH4III ACNGT 1 cut(s) 194
HpyCH4V TGCA 2 cut(s) 282, 309
HpyF10VI GCNNNNNNNGC 2 cut(s) 208, 211
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 2 cut(s) 10, 276
LmnI GCTCC 1 cut(s) 324
LpnPI CCDG 2 cut(s) 117, 136
Lsp1109I GCAGC 2 cut(s) 214, 220
LweI GCATC 1 cut(s) 318
MaeI CTAG 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 254
MalI GATC 2 cut(s) 12, 278
MboI GATC 2 cut(s) 10, 276
MboII GAAGA 5 cut(s) 48, 51, 120, 168, 186
MluCI AATT 3 cut(s) 5, 41, 291
MlyI GAGTC 1 cut(s) 190
MmeI TCCRAC 1 cut(s) 140
MnlI CCTC 4 cut(s) 42, 136, 156, 233
MspA1I CMGCKG 2 cut(s) 205, 211
MwoI GCNNNNNNNGC 2 cut(s) 208, 211
NdeII GATC 2 cut(s) 10, 276
NmuCI GTSAC 1 cut(s) 254
PcsI WCGNNNNNNNCGW 1 cut(s) 222
PflFI GACNNNGTC 2 cut(s) 180, 224
PkrI GCNGC 4 cut(s) 204, 207, 210, 213
PleI GAGTC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 189
PsyI GACNNNGTC 2 cut(s) 180, 224
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
SalI GTCGAC 1 cut(s) 195
SatI GCNGC 4 cut(s) 203, 206, 209, 212
Sau3AI GATC 2 cut(s) 10, 276
SchI GAGTC 1 cut(s) 190
SetI ASST 4 cut(s) 128, 172, 225, 288
SfaNI GCATC 1 cut(s) 318
Sse9I AATT 3 cut(s) 5, 41, 291
SsiI CCGC 3 cut(s) 205, 211, 322
SspMI CTAG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 194
TaqI TCGA 1 cut(s) 196
TasI AATT 3 cut(s) 5, 41, 291
TatI WGTACW 1 cut(s) 299
TauI GCSGC 2 cut(s) 208, 214
TscAI CASTG 1 cut(s) 94
TseFI GTSAC 1 cut(s) 254
TseI GCWGC 2 cut(s) 202, 208
Tsp45I GTSAC 1 cut(s) 254
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 193
TspRI CASTG 1 cut(s) 94
Tth111I GACNNNGTC 2 cut(s) 180, 224
XapI RAATTY 2 cut(s) 41, 291
XmiI GTMKAC 1 cut(s) 196
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.