FvH4_4g19351

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000385
Physical Location & Seq
Forward (+)
23027773 .. 23031937
4165 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g19351.t1

Sequence Viewer

Length: 2478 bp
ATGGTAAAACACGGCGCTACCAAAGGTGCAACAGGATCCAACCCTTCCGAGGAAGTTACGCAAAGGGGAAGTCGCGACGAGCATGTCAACCCTGATGTTCTAAGGCGGGAACGGTCTAAGGACATGATCTCTGCTTTCGACTCACGCCTATCTCAGGTGGAGGAGGGCGTGAGTGGCATGGAGGCCCAGGTGGATGATCTAAGCCAACGGGTAGACGGCTTAGAGGCGGAGGATGCTGCCATCCACACTGTGATCAAGGGCATGTTGGCCCAGCTAGAGGAGTCCTTGCGGTGCGAGATGGCGAAGATTCGCGAGGAGTTCATGGGGGAACTCACCAAAATGCGTCAAGTCCACGAGAAAGAGTTGAATGGCACGCTTGCACGCATGGAGGAGATGCATGGGGACTTGGTCCTATGCAAGCACGCATTAGCTACGGGAGTCGGCACCAGCGGTATTGTGGAGGCTAAGCGCATCGAGGTGCCAAAGCCTAAGAGTTTCAGGGGCTCGCGCAACGCTCGTGAAGTTGATAACTTCTTATGGGGGCTAGACCAATACTTTGGAGTCGTAGGCATCACTGAAGAGGACGCCAAGATTAGAACCACGGCTCTCTACCTCACCGACACTGCCATGTTATGGTGGAGGAGAAGGCGAGGAGATATTGAGAAAGGTACGTGCACCATCGACACCTTTGATGACTTCACTAGAGAACTCAAGAGACAATTTTGTCCCGAGAATGCCGAGGATGAGGCAAAAGCTCGCTTGCGAAGGCTCAAGTACTCGGGGTCTATTCGGGATTATATTAAGGACTTCACCAACTTAGTGCTTGAGATTCCCGATTTACCCGACAAGGATGCTCTCTTCAATTTTATGGATGGTCTCCAACCATGGGCTAAGACCGAGCTAAGGCGACGTGGGGTGCAAGATCTTGCTACCGCTATAGTTGTGGCCGAAAGCCTAATCGACTACACTAGTCCAAAGGAGTCCACAAGCAAGCCGAAGGAAAAGAAGAGTAGTTATGCCAAAGGTGGAGGAGACAAAGGCCAACGCAAAGACGAGCCCCGTCAAGATAACTATGCGGCAAGAAGCAAAGACAAAGGCAAGCAAAAGGATATGAGGAGTTCAAAGCCCAACAACAACAAGTGCTTCCTTTGTGATGGGCCGCATTGGGCTAGAGATTGTCCGCAAAAGAGGGCACTAAGTGCACTCTTAGGGAGTCATCAAGGTGAAACCGAGGGCGGCGACGAAGGTGTAAGCATGGGGTCGATGCAATTACTCAACGTAATTCGATCGACACCCAAAGTCCAAGCCAAAGGCCTACACTTCGTCGTCTTGACAATTGGAGGGAAGTCAATGTCCGCAATGCTCGATACGGGGGCAACCCACAATTTCATCTCGATTGAAGAAGCCCGAAGGCTAGGGCTACGAGGGAGTGATGGAGGGGGCTTCATCAAGGCGGTTAACTCACCCGCCCGACCAATTCAAGGTGTGATTCGAGGAGTCAAGACTACCGTGGGGGCATGGTGTGGAAACTTAGACTTCTCGATTGTTCCAATGGATGACTATAAAGTCGTCCTAGGGTTAGAATTCTATGATCAAGTCAAGGCCATACCGGTGCCGTTAGCCAATAGCATGTGCATCATAGATGGCGACAAGGCGTGCGTTGTGCCGACAAAGAGAGACGCCAAGGAAAATGAGCTATACATCAAGAGGGAGAAGTGCTCCTTTGCAAAGAACGAGGTGTTGTTCTTGGGGCACAAGATCAAGGATGACAAGCTTATGATGGAGGATTGCAAGGTACATGCCATCCAAGAATGGGAGCCACCCACCAAGGCAGAATTTGCAAGCATATCGCAAGTCACTAGCCCACTCTTGAACAAGATCAAGGAGGGACTCAAGGCGGATCCACAAGCACAAAGTGTCATCGCCTTGATAAAGGAGGGCAAGACACGAAGGTTTTGGATGGAGGAAGACCTCCTATACACGAAGGGCCGCCGCATCTATGTGCCAAAGTGGGGCAACTTGAGAAGGGAGCTCATGAAAGAATGTCATGGCTCCAAGTGGGCCGACCATCCGGGAGTAAGGCGCACACTTGCCTTGTTGAAGTCCACCTATTATTGGCTAAGGATGCGCGATGGAATCGAGGAGTATGTGAGGATATGTCTTGTATGCCAACAAGACAAGGTAGTCCAACAACAGCCGAGGGGCTTGCTCGACCCCTTGCCCATTCCCGAGAGACCATGGGAGAGTGTCTCTATGGACTTCATCACTTGTTTGCCAAAGTCCAAGGGGTTTGGGAGCATTATCGTGGTGGTGGACCGATTTAGCAAGTATGCAACCTTCATGGCCGCATCAGCCGATTACACGGCCGAGGAGACCGCTAAGCTATTCCTTAGCAACGTGGTCAAGTTTTGGGGTGTTCCGAAGAACATTGTGAGTGACCGAGACCCACGCTTCACCGGAAGGCCGCCTCAAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Asp_protease_2 Chromo RVP_2 RVT_1 Retrotrans_gag gag-asp_proteas rve

Protein Analysis

826

Amino Acids

92.73

Weight (kDa)

8.73

Isoelectric Point (pI)

42.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ty3_capsid PF19259 161 - 337 7.6e-12 Ty3 transposon capsid-like protein
Retrotrans_gag PF03732 202 - 295 8.9e-14 Retrotransposon gag protein
gag-asp_proteas PF13975 444 - 529 9e-09 gag-polyprotein putative aspartyl protease
Asp_protease_2 PF13650 444 - 529 3.7e-08 Aspartyl protease
Integrase_H2C2 PF17921 673 - 727 1.5e-17 Integrase zinc binding domain
rve PF00665 744 - 820 1.2e-06 Integrase core domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 4 cut(s) 83, 723, 1565, 2183
AccB1I GGYRCC 3 cut(s) 443, 478, 1612
AccB7I CCANNNNNTGG 1 cut(s) 633
AccI GTMKAC 1 cut(s) 213
AccII CGCG 4 cut(s) 75, 312, 508, 2130
AclWI GGATC 4 cut(s) 30, 43, 1895, 1908
AcoI YGGCCR 3 cut(s) 945, 2343, 2364
AcsI RAATTY 2 cut(s) 1583, 1835
AcuI CTGAAG 1 cut(s) 597
AcyI GRCGYC 2 cut(s) 585, 1680
AdeI CACNNNGTG 3 cut(s) 250, 1199, 1916
AfaI GTAC 3 cut(s) 670, 776, 1797
AgeI ACCGGT 1 cut(s) 1609
AgsI TTSAA 7 cut(s) 367, 862, 1122, 1400, 1481, 1873, 2101
AhlI ACTAGT 1 cut(s) 968
AjiI CACGTC 1 cut(s) 911
AjnI CCWGG 1 cut(s) 186
AluBI AGCT 8 cut(s) 274, 431, 755, 901, 1696, 1774, 2032, 2383
AluI AGCT 8 cut(s) 274, 431, 755, 901, 1696, 1774, 2032, 2383
Alw21I GWGCWC 4 cut(s) 677, 1204, 1721, 2034
Alw26I GTCTC 8 cut(s) 709, 881, 1026, 1671, 2227, 2254, 2366, 2436
Alw44I GTGCAC 2 cut(s) 673, 1200
AlwI GGATC 4 cut(s) 30, 43, 1895, 1908
Ama87I CYCGRG 3 cut(s) 728, 778, 2228
ApaLI GTGCAC 2 cut(s) 673, 1200
ApeKI GCWGC 1 cut(s) 236
ApoI RAATTY 2 cut(s) 1583, 1835
ArsI GACNNNNNNTTYG 4 cut(s) 55, 87, 539, 571
AsiGI ACCGGT 1 cut(s) 1609
AspA2I CCTAGG 1 cut(s) 1573
AspLEI GCGC 5 cut(s) 17, 471, 510, 2085, 2130
AspS9I GGNCC 7 cut(s) 184, 268, 409, 1157, 1987, 2061, 2314
AsuC2I CCSGG 1 cut(s) 2073
AsuHPI GGTGA 6 cut(s) 325, 607, 802, 1235, 1455, 2446
AvaI CYCGRG 3 cut(s) 728, 778, 2228
AvaII GGWCC 2 cut(s) 409, 2314
AvrII CCTAGG 1 cut(s) 1573
BaeGI GKGCMC 4 cut(s) 677, 1195, 1204, 1755
BamHI GGATCC 2 cut(s) 35, 1900
BanI GGYRCC 3 cut(s) 443, 478, 1612
BanII GRGCYC 3 cut(s) 506, 1059, 2034
BarI GAAGNNNNNNTAC 2 cut(s) 2321, 2353
BauI CACGAG 2 cut(s) 353, 516
BbsI GAAGAC 1 cut(s) 1974
Bbv12I GWGCWC 4 cut(s) 677, 1204, 1721, 2034
BbvI GCAGC 1 cut(s) 223
BceAI ACGGC 5 cut(s) 28, 232, 618, 1600, 2379
BcgI CGANNNNNNTGC 6 cut(s) 833, 867, 1830, 1864, 2188, 2222
BciT130I CCWGG 1 cut(s) 188
BclI TGATCA 2 cut(s) 252, 1591
BcnI CCSGG 1 cut(s) 2073
BcoDI GTCTC 8 cut(s) 709, 881, 1026, 1671, 2227, 2254, 2366, 2436
BcuI ACTAGT 1 cut(s) 968
BfaI CTAG 8 cut(s) 275, 545, 702, 969, 1170, 1415, 1574, 1860
BfmI CTRYAG 1 cut(s) 936
BfoI RGCGCY 1 cut(s) 18
BglII AGATCT 1 cut(s) 922
BisI GCNGC 8 cut(s) 237, 1077, 1160, 1237, 1990, 1993, 2346, 2465
BlnI CCTAGG 1 cut(s) 1573
BlpI GCTNAGC 2 cut(s) 465, 2379
BlsI GCNGC 8 cut(s) 238, 1078, 1161, 1238, 1991, 1994, 2347, 2466
BmcAI AGTACT 1 cut(s) 776
Bme1390I CCNGG 2 cut(s) 188, 2073
Bme18I GGWCC 2 cut(s) 409, 2314
BmeT110I CYCGRG 3 cut(s) 728, 778, 2228
BmgBI CACGTC 1 cut(s) 911
BmgT120I GGNCC 7 cut(s) 184, 268, 409, 1157, 1987, 2061, 2314
BmiI GGNNCC 7 cut(s) 37, 445, 480, 1614, 1818, 1902, 2053
BmrFI CCNGG 2 cut(s) 188, 2073
BpiI GAAGAC 1 cut(s) 1974
BplI GAGNNNNNCTC 4 cut(s) 1703, 1735, 2234, 2266
Bpu10I CCTNAGC 3 cut(s) 902, 2120, 2390
Bpu1102I GCTNAGC 2 cut(s) 465, 2379
BpuEI CTTGAG 6 cut(s) 695, 755, 845, 1877, 2041, 2454
BpuMI CCSGG 1 cut(s) 2073
BsaAI YACGTR 1 cut(s) 672
BsaHI GRCGYC 2 cut(s) 585, 1680
BsaI GGTCTC 4 cut(s) 881, 2227, 2366, 2436
BsaWI WCCGGW 2 cut(s) 1609, 2456
Bse118I RCCGGY 1 cut(s) 1609
Bse3DI GCAATG 1 cut(s) 1365
BseBI CCWGG 1 cut(s) 188
BseMI GCAATG 1 cut(s) 1365
BseMII CTCAG 1 cut(s) 167
BseSI GKGCMC 4 cut(s) 677, 1195, 1204, 1755
BseX3I CGGCCG 1 cut(s) 2364
BseXI GCAGC 1 cut(s) 223
BseYI CCCAGC 1 cut(s) 270
Bsh1236I CGCG 4 cut(s) 75, 312, 508, 2130
Bsh1285I CGRYCG 2 cut(s) 1289, 2367
BshNI GGYRCC 3 cut(s) 443, 478, 1612
BshTI ACCGGT 1 cut(s) 1609
BsiEI CGRYCG 2 cut(s) 1289, 2367
BsiHKAI GWGCWC 4 cut(s) 677, 1204, 1721, 2034
BsiHKCI CYCGRG 3 cut(s) 728, 778, 2228
BsiSI CCGG 3 cut(s) 1610, 2072, 2457
BslFI GGGAC 3 cut(s) 416, 711, 1902
BsmAI GTCTC 8 cut(s) 709, 881, 1026, 1671, 2227, 2254, 2366, 2436
BsmBI CGTCTC 1 cut(s) 1671
BsmFI GGGAC 3 cut(s) 416, 711, 1902
BsmI GAATGC 1 cut(s) 739
Bso31I GGTCTC 4 cut(s) 881, 2227, 2366, 2436
BsoBI CYCGRG 3 cut(s) 728, 778, 2228
Bsp1286I GDGCHC 8 cut(s) 506, 677, 1059, 1195, 1204, 1721, 1755, 2034
Bsp1720I GCTNAGC 2 cut(s) 465, 2379
Bsp19I CCATGG 2 cut(s) 884, 2237
Bsp68I TCGCGA 2 cut(s) 75, 312
BspCNI CTCAG 1 cut(s) 166
BspFNI CGCG 4 cut(s) 75, 312, 508, 2130
BspHI TCATGA 1 cut(s) 2034
BspLI GGNNCC 7 cut(s) 37, 445, 480, 1614, 1818, 1902, 2053
BspPI GGATC 4 cut(s) 30, 43, 1895, 1908
BspT107I GGYRCC 3 cut(s) 443, 478, 1612
BspTNI GGTCTC 4 cut(s) 881, 2227, 2366, 2436
BsrDI GCAATG 1 cut(s) 1365
BsrFI RCCGGY 1 cut(s) 1609
BssAI RCCGGY 1 cut(s) 1609
BssNI GRCGYC 2 cut(s) 585, 1680
BssSI CACGAG 2 cut(s) 353, 516
BssT1I CCWWGG 6 cut(s) 884, 1573, 1683, 1827, 2237, 2283
Bst2BI CACGAG 2 cut(s) 353, 516
Bst2UI CCWGG 1 cut(s) 188
Bst4CI ACNGT 3 cut(s) 114, 250, 1510
Bst6I CTCTTC 3 cut(s) 573, 863, 1001
BstACI GRCGYC 2 cut(s) 585, 1680
BstAPI GCANNNNNTGC 2 cut(s) 1199, 1838
BstBAI YACGTR 1 cut(s) 672
BstDSI CCRYGG 4 cut(s) 600, 884, 1509, 2237
BstENI CCTNNNNNAGG 1 cut(s) 152
BstFNI CGCG 4 cut(s) 75, 312, 508, 2130
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 5 cut(s) 17, 471, 510, 2085, 2130
BstMAI GTCTC 8 cut(s) 709, 881, 1026, 1671, 2227, 2254, 2366, 2436
BstMCI CGRYCG 2 cut(s) 1289, 2367
BstMWI GCNNNNNNNGC 6 cut(s) 174, 233, 1199, 1838, 2125, 2351
BstNI CCWGG 1 cut(s) 188
BstNSI RCATGY 4 cut(s) 86, 265, 1633, 1802
BstSCI CCNGG 2 cut(s) 186, 2071
BstSFI CTRYAG 1 cut(s) 936
BstSLI GKGCMC 4 cut(s) 677, 1195, 1204, 1755
BstUI CGCG 4 cut(s) 75, 312, 508, 2130
BstV1I GCAGC 1 cut(s) 223
BstV2I GAAGAC 1 cut(s) 1974
BstX2I RGATCY 3 cut(s) 35, 922, 1900
BstXI CCANNNNNNTGG 1 cut(s) 557
BstYI RGATCY 3 cut(s) 35, 922, 1900
BstZI CGGCCG 1 cut(s) 2364
BtgI CCRYGG 4 cut(s) 600, 884, 1509, 2237
BtgZI GCGATG 2 cut(s) 1906, 2145
BtrI CACGTC 1 cut(s) 911
BtsI GCAGTG 1 cut(s) 621
BtsIMutI CAGTG 3 cut(s) 246, 573, 621
BtuMI TCGCGA 2 cut(s) 75, 312
CciI TCATGA 1 cut(s) 2034
CfoI GCGC 5 cut(s) 17, 471, 510, 2085, 2130
Cfr10I RCCGGY 1 cut(s) 1609
Cfr13I GGNCC 7 cut(s) 184, 268, 409, 1157, 1987, 2061, 2314
CseI GACGC 3 cut(s) 332, 593, 1688
Csp6I GTAC 3 cut(s) 669, 775, 1796
CspAI ACCGGT 1 cut(s) 1609
CviQI GTAC 3 cut(s) 669, 775, 1796
DraIII CACNNNGTG 3 cut(s) 250, 1199, 1916
DrdI GACNNNNNNGTC 4 cut(s) 83, 723, 1565, 2183
DseDI GACNNNNNNGTC 4 cut(s) 83, 723, 1565, 2183
EaeI YGGCCR 3 cut(s) 945, 2343, 2364
EagI CGGCCG 1 cut(s) 2364
Eam1104I CTCTTC 3 cut(s) 573, 863, 1001
EarI CTCTTC 3 cut(s) 573, 863, 1001
EciI GGCGGA 2 cut(s) 242, 1913
Ecl136II GAGCTC 1 cut(s) 2032
EclXI CGGCCG 1 cut(s) 2364
Eco130I CCWWGG 6 cut(s) 884, 1573, 1683, 1827, 2237, 2283
Eco147I AGGCCT 1 cut(s) 1314
Eco24I GRGCYC 3 cut(s) 506, 1059, 2034
Eco31I GGTCTC 4 cut(s) 881, 2227, 2366, 2436
Eco47I GGWCC 2 cut(s) 409, 2314
Eco52I CGGCCG 1 cut(s) 2364
Eco53kI GAGCTC 1 cut(s) 2032
Eco57I CTGAAG 1 cut(s) 597
Eco88I CYCGRG 3 cut(s) 728, 778, 2228
EcoICRI GAGCTC 1 cut(s) 2032
EcoNI CCTNNNNNAGG 1 cut(s) 152
EcoRI GAATTC 1 cut(s) 1583
EcoRII CCWGG 1 cut(s) 186
EcoT14I CCWWGG 6 cut(s) 884, 1573, 1683, 1827, 2237, 2283
EcoT22I ATGCAT 1 cut(s) 399
EcoT38I GRGCYC 3 cut(s) 506, 1059, 2034
ErhI CCWWGG 6 cut(s) 884, 1573, 1683, 1827, 2237, 2283
Esp3I CGTCTC 1 cut(s) 1671
FalI AAGNNNNNCTT 2 cut(s) 1706, 1738
FaqI GGGAC 3 cut(s) 416, 711, 1902
FauI CCCGC 2 cut(s) 99, 1474
FbaI TGATCA 2 cut(s) 252, 1591
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 8 cut(s) 237, 1077, 1160, 1237, 1990, 1993, 2346, 2465
FriOI GRGCYC 3 cut(s) 506, 1059, 2034
Fsp4HI GCNGC 8 cut(s) 237, 1077, 1160, 1237, 1990, 1993, 2346, 2465
FspBI CTAG 8 cut(s) 275, 545, 702, 969, 1170, 1415, 1574, 1860
GlaI GCGC 5 cut(s) 16, 470, 509, 2084, 2129
GluI GCNGC 8 cut(s) 237, 1077, 1160, 1237, 1990, 1993, 2346, 2465
GsaI CCCAGC 1 cut(s) 274
HaeII RGCGCY 1 cut(s) 18
HapII CCGG 3 cut(s) 1610, 2072, 2457
HgaI GACGC 3 cut(s) 332, 593, 1688
HhaI GCGC 5 cut(s) 17, 471, 510, 2085, 2130
Hin1I GRCGYC 2 cut(s) 585, 1680
Hin6I GCGC 5 cut(s) 15, 469, 508, 2083, 2128
HinP1I GCGC 5 cut(s) 15, 469, 508, 2083, 2128
HincII GTYRAC 2 cut(s) 88, 1459
HindII GTYRAC 2 cut(s) 88, 1459
HindIII AAGCTT 1 cut(s) 1772
HpaI GTTAAC 1 cut(s) 1459
HpaII CCGG 3 cut(s) 1610, 2072, 2457
HphI GGTGA 6 cut(s) 325, 607, 802, 1235, 1455, 2446
Hpy166II GTNNAC 9 cut(s) 88, 214, 352, 675, 984, 1202, 1459, 2106, 2314
Hpy188I TCNGA 2 cut(s) 49, 2421
Hpy8I GTNNAC 9 cut(s) 88, 214, 352, 675, 984, 1202, 1459, 2106, 2314
Hpy99I CGWCG 4 cut(s) 80, 912, 1244, 1328
HpyCH4III ACNGT 3 cut(s) 114, 250, 1510
HpyCH4IV ACGT 4 cut(s) 671, 910, 1278, 2397
HpyF10VI GCNNNNNNNGC 6 cut(s) 174, 233, 1199, 1838, 2125, 2351
HpySE526I ACGT 4 cut(s) 671, 910, 1278, 2397
Hsp92I GRCGYC 2 cut(s) 585, 1680
HspAI GCGC 5 cut(s) 15, 469, 508, 2083, 2128
Ksp22I TGATCA 2 cut(s) 252, 1591
KspAI GTTAAC 1 cut(s) 1459
LmnI GCTCC 5 cut(s) 1724, 1816, 2029, 2057, 2295
Lsp1109I GCAGC 1 cut(s) 223
MaeI CTAG 8 cut(s) 275, 545, 702, 969, 1170, 1415, 1574, 1860
MaeII ACGT 4 cut(s) 671, 910, 1278, 2397
MaeIII GTNAC 3 cut(s) 55, 1855, 2435
MboII GAAGA 7 cut(s) 316, 590, 850, 1018, 1412, 1979, 2434
MfeI CAATTG 1 cut(s) 1335
MflI RGATCY 3 cut(s) 35, 922, 1900
MhlI GDGCHC 8 cut(s) 506, 677, 1059, 1195, 1204, 1721, 1755, 2034
MluCI AATT 9 cut(s) 719, 862, 1268, 1281, 1335, 1384, 1476, 1583, 1835
MlyI GAGTC 8 cut(s) 134, 290, 447, 570, 989, 1222, 1506, 1884
MmeI TCCRAC 3 cut(s) 63, 904, 2212
Mph1103I ATGCAT 1 cut(s) 399
MseI TTAA 2 cut(s) 801, 1458
MslI CAYNNNNRTG 7 cut(s) 338, 476, 626, 1221, 1610, 2000, 2303
MspA1I CMGCKG 1 cut(s) 450
MspI CCGG 3 cut(s) 1610, 2072, 2457
MspR9I CCNGG 2 cut(s) 188, 2073
MunI CAATTG 1 cut(s) 1335
Mva1269I GAATGC 1 cut(s) 739
MvaI CCWGG 1 cut(s) 188
MvnI CGCG 4 cut(s) 75, 312, 508, 2130
MwoI GCNNNNNNNGC 6 cut(s) 174, 233, 1199, 1838, 2125, 2351
NciI CCSGG 1 cut(s) 2073
NcoI CCATGG 2 cut(s) 884, 2237
NlaIV GGNNCC 7 cut(s) 37, 445, 480, 1614, 1818, 1902, 2053
NmeAIII GCCGAG 3 cut(s) 763, 2223, 2392
NmuCI GTSAC 2 cut(s) 1855, 2435
NruI TCGCGA 2 cut(s) 75, 312
NsiI ATGCAT 1 cut(s) 399
NspI RCATGY 4 cut(s) 86, 265, 1633, 1802
PagI TCATGA 1 cut(s) 2034
PceI AGGCCT 1 cut(s) 1314
PctI GAATGC 1 cut(s) 739
PfeI GAWTC 4 cut(s) 307, 829, 1489, 2136
PflFI GACNNNGTC 1 cut(s) 407
PflMI CCANNNNNTGG 1 cut(s) 633
PfoI TCCNGGA 1 cut(s) 2071
PinAI ACCGGT 1 cut(s) 1609
PkrI GCNGC 8 cut(s) 238, 1078, 1161, 1238, 1991, 1994, 2347, 2466
Ple19I CGATCG 1 cut(s) 1289
PleI GAGTC 8 cut(s) 134, 289, 446, 569, 988, 1221, 1505, 1884
PpsI GAGTC 8 cut(s) 134, 289, 446, 569, 988, 1221, 1505, 1884
Ppu21I YACGTR 1 cut(s) 672
Psp124BI GAGCTC 1 cut(s) 2034
Psp6I CCWGG 1 cut(s) 186
PspFI CCCAGC 1 cut(s) 270
PspGI CCWGG 1 cut(s) 186
PspN4I GGNNCC 7 cut(s) 37, 445, 480, 1614, 1818, 1902, 2053
PspPI GGNCC 7 cut(s) 184, 268, 409, 1157, 1987, 2061, 2314
PsuI RGATCY 3 cut(s) 35, 922, 1900
PsyI GACNNNGTC 1 cut(s) 407
PvuI CGATCG 1 cut(s) 1289
RruI TCGCGA 2 cut(s) 75, 312
RsaI GTAC 3 cut(s) 670, 776, 1797
RsaNI GTAC 3 cut(s) 669, 775, 1796
RseI CAYNNNNRTG 7 cut(s) 338, 476, 626, 1221, 1610, 2000, 2303
SacI GAGCTC 1 cut(s) 2034
SaqAI TTAA 2 cut(s) 801, 1458
SatI GCNGC 8 cut(s) 237, 1077, 1160, 1237, 1990, 1993, 2346, 2465
Sau96I GGNCC 7 cut(s) 184, 268, 409, 1157, 1987, 2061, 2314
ScaI AGTACT 1 cut(s) 776
SchI GAGTC 8 cut(s) 134, 290, 447, 570, 989, 1222, 1506, 1884
ScrFI CCNGG 2 cut(s) 188, 2073
SduI GDGCHC 8 cut(s) 506, 677, 1059, 1195, 1204, 1721, 1755, 2034
SfcI CTRYAG 1 cut(s) 936
SinI GGWCC 2 cut(s) 409, 2314
SmiMI CAYNNNNRTG 7 cut(s) 338, 476, 626, 1221, 1610, 2000, 2303
SmlI CTYRAG 6 cut(s) 710, 770, 824, 1892, 2020, 2469
SmoI CTYRAG 6 cut(s) 710, 770, 824, 1892, 2020, 2469
SpeI ACTAGT 1 cut(s) 968
Sse9I AATT 9 cut(s) 719, 862, 1268, 1281, 1335, 1384, 1476, 1583, 1835
SseBI AGGCCT 1 cut(s) 1314
SspMI CTAG 8 cut(s) 275, 545, 702, 969, 1170, 1415, 1574, 1860
SstI GAGCTC 1 cut(s) 2034
StuI AGGCCT 1 cut(s) 1314
StyD4I CCNGG 2 cut(s) 186, 2071
StyI CCWWGG 6 cut(s) 884, 1573, 1683, 1827, 2237, 2283
TaaI ACNGT 3 cut(s) 114, 250, 1510
TaiI ACGT 4 cut(s) 674, 913, 1281, 2400
TaqII GACCGA 3 cut(s) 911, 2331, 2454
TasI AATT 9 cut(s) 719, 862, 1268, 1281, 1335, 1384, 1476, 1583, 1835
TatI WGTACW 1 cut(s) 774
TauI GCSGC 7 cut(s) 1079, 1162, 1239, 1992, 1995, 2348, 2467
TfiI GAWTC 4 cut(s) 307, 829, 1489, 2136
Tru1I TTAA 2 cut(s) 801, 1458
Tru9I TTAA 2 cut(s) 801, 1458
TscAI CASTG 3 cut(s) 253, 580, 628
TseFI GTSAC 2 cut(s) 1855, 2435
TseI GCWGC 1 cut(s) 236
Tsp45I GTSAC 2 cut(s) 1855, 2435
TspDTI ATGAA 6 cut(s) 310, 1378, 1435, 2051, 2251, 2329
TspRI CASTG 3 cut(s) 253, 580, 628
Tth111I GACNNNGTC 1 cut(s) 407
Van91I CCANNNNNTGG 1 cut(s) 633
VneI GTGCAC 2 cut(s) 673, 1200
VpaK11BI GGWCC 2 cut(s) 409, 2314
XagI CCTNNNNNAGG 1 cut(s) 152
XapI RAATTY 2 cut(s) 1583, 1835
XceI RCATGY 4 cut(s) 86, 265, 1633, 1802
XcmI CCANNNNNNNNNTGG 1 cut(s) 454
XmaJI CCTAGG 1 cut(s) 1573
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 8 cut(s) 275, 545, 702, 969, 1170, 1415, 1574, 1860
ZrmI AGTACT 1 cut(s) 776
Zsp2I ATGCAT 1 cut(s) 399
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.