FvH4_7g04121

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000385
Physical Location & Seq
Reverse (-)
4716209 .. 4716832
624 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g04121.t1

Sequence Viewer

Length: 624 bp
ATGCTCACCTTTAGCGTGTTTCCTCCTTTCCGAAGGTGGAGTGCAATCTATGAGGAGACCAAGCGAGTCATGGACGCATATGCGTATGAATGGGTCTTGAACAGTCAGAAGCATGAAGACATGAAGAAGGGAGCCATGAATCTACCGGATGTCATCGTCATAAGTGATGACGAAGAAGAAGAGAGTCTCGAGAGCGAGAAGAGCTTGGAAACTACTACTTGGACTGAGCAAAAGAAGGAGGATGCTGCAGCAAATTGGCCTGCATGGGGAGAACTAGAAAAGTTGAACGAAGAGTCATTATTCGACATCCTTGGTGAAAAAACTCAAGGCAATCAGCCGAGGCTAAAGGAGGGAGAAAAGGTAACTTGGGAGGAGTTTACCAAGGCATTGAAAGTATATGATGCCAACAAGGGCATCAAGGATGATGCAGCCAAGTGGGAGAAAGAAGCGGGCAGCAAGCAAGGGATGAAGCGCAAGACCATTGGCAACAAGGGCATCGCCAAACTCAAACGGGGGCGGTTTGTTACATCTCTAAAGTCCCATAGCCGGCAAGGTGAGCGACATGAGTTGTCTTTGCACTATGTCGACACGCATGAAGGCACAAGCAAACACAAGCACAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

23.96

Weight (kDa)

6.42

Isoelectric Point (pI)

39.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 585
AciI CCGC 2 cut(s) 449, 517
AfiI CCNNNNNNNGG 2 cut(s) 266, 546
AgsI TTSAA 3 cut(s) 100, 286, 391
AluBI AGCT 1 cut(s) 204
AluI AGCT 1 cut(s) 204
Alw26I GTCTC 2 cut(s) 50, 191
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 4 cut(s) 245, 248, 428, 453
AspLEI GCGC 1 cut(s) 474
AsuHPI GGTGA 2 cut(s) 326, 566
AvaI CYCGRG 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 123
BbvI GCAGC 4 cut(s) 232, 260, 440, 465
BcoDI GTCTC 2 cut(s) 50, 191
BfaI CTAG 1 cut(s) 275
BfmI CTRYAG 1 cut(s) 246
BisI GCNGC 4 cut(s) 246, 249, 429, 454
BlsI GCNGC 4 cut(s) 247, 250, 430, 455
BmeT110I CYCGRG 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 133
BmsI GCATC 5 cut(s) 232, 391, 415, 423, 504
BpiI GAAGAC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 309
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 3 cut(s) 310, 338, 381
BsaWI WCCGGW 1 cut(s) 145
BsaXI ACNNNNNCTCC 2 cut(s) 345, 375
Bsc4I CCNNNNNNNGG 2 cut(s) 266, 546
Bse118I RCCGGY 1 cut(s) 546
BseDI CCNNGG 3 cut(s) 310, 338, 381
BseGI GGATG 5 cut(s) 154, 247, 306, 427, 471
BseLI CCNNNNNNNGG 2 cut(s) 266, 546
BseMII CTCAG 1 cut(s) 216
BseRI GAGGAG 2 cut(s) 68, 386
BseXI GCAGC 4 cut(s) 232, 260, 440, 465
BshFI GGCC 1 cut(s) 259
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 2 cut(s) 146, 547
BslFI GGGAC 1 cut(s) 523
BslI CCNNNNNNNGG 2 cut(s) 266, 546
BsmAI GTCTC 2 cut(s) 50, 191
BsmFI GGGAC 1 cut(s) 523
BsnI GGCC 1 cut(s) 259
Bso31I GGTCTC 1 cut(s) 50
BsoBI CYCGRG 1 cut(s) 188
BspACI CCGC 2 cut(s) 449, 517
BspANI GGCC 1 cut(s) 259
BspCNI CTCAG 1 cut(s) 217
BspLI GGNNCC 1 cut(s) 133
BspMAI CTGCAG 1 cut(s) 250
BspQI GCTCTTC 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 50
BsrFI RCCGGY 1 cut(s) 546
BssAI RCCGGY 1 cut(s) 546
BssECI CCNNGG 3 cut(s) 310, 338, 381
BssT1I CCWWGG 2 cut(s) 310, 381
Bst4CI ACNGT 1 cut(s) 104
Bst6I CTCTTC 3 cut(s) 174, 194, 285
BstC8I GCNNGC 4 cut(s) 261, 451, 458, 548
BstDEI CTNAG 1 cut(s) 225
BstF5I GGATG 5 cut(s) 154, 247, 306, 427, 471
BstHHI GCGC 1 cut(s) 474
BstMAI GTCTC 2 cut(s) 50, 191
BstMWI GCNNNNNNNGC 3 cut(s) 201, 492, 556
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 4 cut(s) 232, 260, 440, 465
BstV2I GAAGAC 1 cut(s) 123
BsuRI GGCC 1 cut(s) 259
BtgZI GCGATG 1 cut(s) 481
BtsCI GGATG 5 cut(s) 154, 247, 306, 427, 471
Cac8I GCNNGC 4 cut(s) 261, 451, 458, 548
CfoI GCGC 1 cut(s) 474
Cfr10I RCCGGY 1 cut(s) 546
CseI GACGC 1 cut(s) 83
CviAII CATG 7 cut(s) 70, 113, 121, 136, 264, 563, 593
CviJI RGCY 7 cut(s) 134, 204, 259, 337, 343, 431, 546
CviKI_1 RGCY 7 cut(s) 134, 204, 259, 337, 343, 431, 546
DdeI CTNAG 1 cut(s) 225
Eam1104I CTCTTC 3 cut(s) 174, 194, 285
EarI CTCTTC 3 cut(s) 174, 194, 285
Eco130I CCWWGG 2 cut(s) 310, 381
Eco31I GGTCTC 1 cut(s) 50
Eco88I CYCGRG 1 cut(s) 188
EcoT14I CCWWGG 2 cut(s) 310, 381
ErhI CCWWGG 2 cut(s) 310, 381
FaeI CATG 7 cut(s) 73, 116, 124, 139, 267, 566, 596
FaqI GGGAC 1 cut(s) 523
FatI CATG 7 cut(s) 69, 112, 120, 135, 263, 562, 592
FauI CCCGC 1 cut(s) 442
FauNDI CATATG 1 cut(s) 79
FblI GTMKAC 1 cut(s) 585
Fnu4HI GCNGC 4 cut(s) 246, 249, 429, 454
FokI GGATG 5 cut(s) 161, 254, 293, 434, 478
Fsp4HI GCNGC 4 cut(s) 246, 249, 429, 454
FspBI CTAG 1 cut(s) 275
GlaI GCGC 1 cut(s) 473
GluI GCNGC 4 cut(s) 246, 249, 429, 454
HaeIII GGCC 1 cut(s) 259
HapII CCGG 2 cut(s) 146, 547
HgaI GACGC 1 cut(s) 83
HhaI GCGC 1 cut(s) 474
Hin1II CATG 7 cut(s) 73, 116, 124, 139, 267, 566, 596
Hin6I GCGC 1 cut(s) 472
HinP1I GCGC 1 cut(s) 472
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HinfI GANTC 4 cut(s) 66, 139, 184, 293
HpaII CCGG 2 cut(s) 146, 547
HphI GGTGA 2 cut(s) 326, 566
Hpy166II GTNNAC 2 cut(s) 378, 586
Hpy188I TCNGA 2 cut(s) 32, 108
Hpy188III TCNNGA 3 cut(s) 97, 188, 190
Hpy8I GTNNAC 2 cut(s) 378, 586
HpyAV CCTTC 4 cut(s) 27, 121, 229, 590
HpyCH4III ACNGT 1 cut(s) 104
HpyCH4V TGCA 5 cut(s) 44, 248, 263, 428, 577
HpyF10VI GCNNNNNNNGC 3 cut(s) 201, 492, 556
HpyF3I CTNAG 1 cut(s) 225
Hsp92II CATG 7 cut(s) 73, 116, 124, 139, 267, 566, 596
HspAI GCGC 1 cut(s) 472
KroI GCCGGC 1 cut(s) 546
KroNI GCCGGC 1 cut(s) 548
LguI GCTCTTC 1 cut(s) 194
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 3 cut(s) 159, 273, 560
Lsp1109I GCAGC 4 cut(s) 232, 260, 440, 465
LweI GCATC 5 cut(s) 232, 391, 415, 423, 504
MaeI CTAG 1 cut(s) 275
MaeIII GTNAC 2 cut(s) 361, 523
MboII GAAGA 7 cut(s) 128, 136, 185, 188, 191, 211, 302
MluCI AATT 1 cut(s) 253
MlyI GAGTC 3 cut(s) 75, 193, 302
MnlI CCTC 6 cut(s) 33, 46, 232, 333, 343, 364
MroNI GCCGGC 1 cut(s) 546
MspI CCGG 2 cut(s) 146, 547
MwoI GCNNNNNNNGC 3 cut(s) 201, 492, 556
NaeI GCCGGC 1 cut(s) 548
NdeI CATATG 1 cut(s) 79
NgoMIV GCCGGC 1 cut(s) 546
NlaIII CATG 7 cut(s) 73, 116, 124, 139, 267, 566, 596
NlaIV GGNNCC 1 cut(s) 133
NmeAIII GCCGAG 1 cut(s) 363
PaeR7I CTCGAG 1 cut(s) 188
PciSI GCTCTTC 1 cut(s) 194
PdiI GCCGGC 1 cut(s) 548
PfeI GAWTC 1 cut(s) 139
PkrI GCNGC 4 cut(s) 247, 250, 430, 455
PleI GAGTC 3 cut(s) 74, 192, 301
PpsI GAGTC 3 cut(s) 74, 192, 301
PspN4I GGNNCC 1 cut(s) 133
PstI CTGCAG 1 cut(s) 250
SalI GTCGAC 1 cut(s) 584
SapI GCTCTTC 1 cut(s) 194
SatI GCNGC 4 cut(s) 246, 249, 429, 454
SchI GAGTC 3 cut(s) 75, 193, 302
SetI ASST 5 cut(s) 11, 38, 206, 363, 556
SfaNI GCATC 5 cut(s) 232, 391, 415, 423, 504
SfcI CTRYAG 1 cut(s) 246
Sfr274I CTCGAG 1 cut(s) 188
SlaI CTCGAG 1 cut(s) 188
SmlI CTYRAG 2 cut(s) 188, 324
SmoI CTYRAG 2 cut(s) 188, 324
Sse9I AATT 1 cut(s) 253
SsiI CCGC 2 cut(s) 449, 517
SspMI CTAG 1 cut(s) 275
StyI CCWWGG 2 cut(s) 310, 381
TaaI ACNGT 1 cut(s) 104
TaqI TCGA 3 cut(s) 189, 303, 585
TasI AATT 1 cut(s) 253
TfiI GAWTC 1 cut(s) 139
TseI GCWGC 4 cut(s) 245, 248, 428, 453
TspDTI ATGAA 6 cut(s) 102, 129, 137, 152, 482, 609
XcmI CCANNNNNNNNNTGG 1 cut(s) 67
XhoI CTCGAG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 585
XspI CTAG 1 cut(s) 275
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.