Rmu_sc0008506.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008506.1
OG0000385
Physical Location & Seq
Reverse (-)
29000 .. 29317
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008506.1_g000007.1.cds

Sequence Viewer

Length: 318 bp
atgacaggcaagacgacaaaccaacaaagattagattggtatgaccaacaaatcggagaacttgtgggggtgcccgacaggttgattgatatcactaaggtgttggaccgcgtcgacctagatgagttggcggcgcagatgatagaggtggagagcctaagggaccgagttgtggcccttgaaaaacgtaaagctcgaggaagcggaagggagagaaatgaggaagaaactcccattccgaacgagcaaatgagggcaatgagtgatgcccttaatacacttcaggtgacagtggacaatatggcagatgatgtctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.97

Weight (kDa)

4.5

Isoelectric Point (pI)

29.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 70
AccI GTMKAC 1 cut(s) 114
AccII CGCG 1 cut(s) 111
AciI CCGC 3 cut(s) 109, 131, 204
AcuI CTGAAG 1 cut(s) 266
AfiI CCNNNNNNNGG 1 cut(s) 172
AgsI TTSAA 1 cut(s) 182
AleI CACNNNNGTG 1 cut(s) 98
AluBI AGCT 1 cut(s) 194
AluI AGCT 1 cut(s) 194
Ama87I CYCGRG 1 cut(s) 195
AoxI GGCC 1 cut(s) 174
AspLEI GCGC 1 cut(s) 136
AspS9I GGNCC 3 cut(s) 106, 163, 175
AsuHPI GGTGA 1 cut(s) 298
AvaI CYCGRG 1 cut(s) 195
AvaII GGWCC 2 cut(s) 106, 163
AxyI CCTNAGG 1 cut(s) 158
BaeGI GKGCMC 1 cut(s) 75
BanI GGYRCC 1 cut(s) 70
BfaI CTAG 1 cut(s) 119
BisI GCNGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 133
Bme18I GGWCC 2 cut(s) 106, 163
BmeT110I CYCGRG 1 cut(s) 195
BmgT120I GGNCC 3 cut(s) 106, 163, 175
BmiI GGNNCC 2 cut(s) 72, 164
BmsI GCATC 1 cut(s) 256
BsaBI GATNNNNATC 1 cut(s) 89
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 172
Bse21I CCTNAGG 1 cut(s) 158
Bse3DI GCAATG 1 cut(s) 264
Bse8I GATNNNNATC 1 cut(s) 89
BseJI GATNNNNATC 1 cut(s) 89
BseLI CCNNNNNNNGG 1 cut(s) 172
BseMI GCAATG 1 cut(s) 264
BseSI GKGCMC 1 cut(s) 75
Bsh1236I CGCG 1 cut(s) 111
BshFI GGCC 1 cut(s) 176
BshNI GGYRCC 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 195
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 172
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 1 cut(s) 176
BsoBI CYCGRG 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 75
BspACI CCGC 3 cut(s) 109, 131, 204
BspANI GGCC 1 cut(s) 176
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 72, 164
BspT107I GGYRCC 1 cut(s) 70
BsrDI GCAATG 1 cut(s) 264
Bst4CI ACNGT 1 cut(s) 292
BstDEI CTNAG 2 cut(s) 96, 158
BstFNI CGCG 1 cut(s) 111
BstHHI GCGC 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 75
BstUI CGCG 1 cut(s) 111
Bsu36I CCTNAGG 1 cut(s) 158
BsuRI GGCC 1 cut(s) 176
BtsIMutI CAGTG 1 cut(s) 297
CfoI GCGC 1 cut(s) 136
Cfr13I GGNCC 3 cut(s) 106, 163, 175
CseI GACGC 1 cut(s) 100
CviJI RGCY 3 cut(s) 156, 176, 194
CviKI_1 RGCY 3 cut(s) 156, 176, 194
DdeI CTNAG 2 cut(s) 96, 158
Eco32I GATATC 1 cut(s) 91
Eco47I GGWCC 2 cut(s) 106, 163
Eco57I CTGAAG 1 cut(s) 266
Eco81I CCTNAGG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 195
EcoRV GATATC 1 cut(s) 91
FaiI YATR 2 cut(s) 42, 302
FaqI GGGAC 1 cut(s) 176
FblI GTMKAC 1 cut(s) 114
Fnu4HI GCNGC 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 132
FspBI CTAG 1 cut(s) 119
GlaI GCGC 1 cut(s) 135
GluI GCNGC 1 cut(s) 132
HaeIII GGCC 1 cut(s) 176
HgaI GACGC 1 cut(s) 100
HhaI GCGC 1 cut(s) 136
Hin6I GCGC 1 cut(s) 134
HinP1I GCGC 1 cut(s) 134
HincII GTYRAC 1 cut(s) 115
HindII GTYRAC 1 cut(s) 115
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 2 cut(s) 115, 295
Hpy188I TCNGA 3 cut(s) 56, 240, 317
Hpy8I GTNNAC 2 cut(s) 115, 295
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 1 cut(s) 201
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 1 cut(s) 187
HpyF3I CTNAG 2 cut(s) 96, 158
HpySE526I ACGT 1 cut(s) 187
HspAI GCGC 1 cut(s) 134
LpnPI CCDG 2 cut(s) 64, 269
LweI GCATC 1 cut(s) 256
MaeI CTAG 1 cut(s) 119
MaeII ACGT 1 cut(s) 187
MaeIII GTNAC 1 cut(s) 286
MboII GAAGA 1 cut(s) 236
MhlI GDGCHC 1 cut(s) 75
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 4 cut(s) 139, 191, 214, 246
MseI TTAA 1 cut(s) 273
MslI CAYNNNNRTG 1 cut(s) 98
MvnI CGCG 1 cut(s) 111
NlaIV GGNNCC 2 cut(s) 72, 164
NmuCI GTSAC 1 cut(s) 286
OliI CACNNNNGTG 1 cut(s) 98
PaeR7I CTCGAG 1 cut(s) 195
PcsI WCGNNNNNNNCGW 1 cut(s) 193
PflFI GACNNNGTC 1 cut(s) 110
PkrI GCNGC 1 cut(s) 133
PspN4I GGNNCC 2 cut(s) 72, 164
PspPI GGNCC 3 cut(s) 106, 163, 175
PspXI VCTCGAGB 1 cut(s) 195
PsyI GACNNNGTC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 98
SalI GTCGAC 1 cut(s) 113
SaqAI TTAA 1 cut(s) 273
SatI GCNGC 1 cut(s) 132
Sau96I GGNCC 3 cut(s) 106, 163, 175
SduI GDGCHC 1 cut(s) 75
SetI ASST 7 cut(s) 83, 102, 120, 150, 190, 196, 288
SfaNI GCATC 1 cut(s) 256
Sfr274I CTCGAG 1 cut(s) 195
SinI GGWCC 2 cut(s) 106, 163
SlaI CTCGAG 1 cut(s) 195
SmiMI CAYNNNNRTG 1 cut(s) 98
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
SsiI CCGC 3 cut(s) 109, 131, 204
SspMI CTAG 1 cut(s) 119
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 114, 196
TaqII GACCGA 1 cut(s) 180
TauI GCSGC 1 cut(s) 134
Tru1I TTAA 1 cut(s) 273
Tru9I TTAA 1 cut(s) 273
TscAI CASTG 1 cut(s) 297
TseFI GTSAC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 286
TspRI CASTG 1 cut(s) 297
Tth111I GACNNNGTC 1 cut(s) 110
VpaK11BI GGWCC 2 cut(s) 106, 163
XhoI CTCGAG 1 cut(s) 195
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 1 cut(s) 119
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.