Rh1CG115400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000385
Physical Location & Seq
Forward (+)
24335543 .. 24336321
779 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG115400.1

Sequence Viewer

Length: 504 bp
ATGGAGGGAGCCATGCGGAATGCGGTGAAGGCAGGTGGCCAAGAGGCAACGTCCGAAGGCAAAGACTTGGAAGAAGAGATCCATGTTCTGAGCAGGGCAATGAGCAAGGAGTTGCTCAACCGTCTCGCAGGAGTGAAGATTGAGGAAATGAGTCTGGATGTAGCCTTGATAGAGATCAAGCCAGATAAAATGTTCAAAGTACTCAAAGATGATAATGTGGCGCTTCCTCCTTGTCGAATGAAAGGCCACATGATGGAGCTGGAGGCGAGTGCAGGACCTCATGCACGAGCGCTTCATCAGGTACCAATAGAGATAGTGAAGCAGCGGAGACACAATGGTGTGTTGCAAGGTGCAGGCTGTGGAGAGCTTTCCAACGCTTACTATGGTGCCAAGGTGTTGTTGCAAAGTAGGCAACAAGGTTTGAGGGATCATGGCGCAAGGCCAGCGTCGAAGGTGATACTCAAAGGGAATGTTCCTAAGAGATGGGGAACAAGTGCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

167

Amino Acids

18.21

Weight (kDa)

9.3

Isoelectric Point (pI)

57.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 23
Acc65I GGTACC 1 cut(s) 301
AccB1I GGYRCC 2 cut(s) 301, 386
AccB7I CCANNNNNTGG 1 cut(s) 253
AciI CCGC 3 cut(s) 16, 23, 325
AclWI GGATC 2 cut(s) 73, 435
AcoI YGGCCR 1 cut(s) 37
AfaI GTAC 2 cut(s) 201, 303
AfeI AGCGCT 1 cut(s) 291
AfiI CCNNNNNNNGG 1 cut(s) 253
AgsI TTSAA 1 cut(s) 196
AleI CACNNNNGTG 1 cut(s) 336
AloI GAACNNNNNNTCC 1 cut(s) 481
AluBI AGCT 2 cut(s) 259, 367
AluI AGCT 2 cut(s) 259, 367
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 2 cut(s) 128, 322
AlwI GGATC 2 cut(s) 73, 435
Aor51HI AGCGCT 1 cut(s) 291
AoxI GGCC 3 cut(s) 37, 244, 440
ApeKI GCWGC 1 cut(s) 322
Asp718I GGTACC 1 cut(s) 301
AspLEI GCGC 3 cut(s) 223, 292, 437
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 2 cut(s) 37, 466
AvaII GGWCC 1 cut(s) 275
BalI TGGCCA 1 cut(s) 39
BanI GGYRCC 2 cut(s) 301, 386
BauI CACGAG 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 499
BbvI GCAGC 1 cut(s) 334
BccI CCATC 2 cut(s) 247, 477
BcoDI GTCTC 2 cut(s) 128, 322
BfoI RGCGCY 2 cut(s) 224, 293
BfuAI ACCTGC 1 cut(s) 23
BisI GCNGC 1 cut(s) 323
BlsI GCNGC 1 cut(s) 324
BmcAI AGTACT 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 275
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 3 cut(s) 10, 303, 388
BpmI CTGGAG 1 cut(s) 281
BsaBI GATNNNNATC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 390
BsaXI ACNNNNNCTCC 1 cut(s) 481
Bsc4I CCNNNNNNNGG 1 cut(s) 253
Bse3DI GCAATG 1 cut(s) 105
Bse8I GATNNNNATC 1 cut(s) 173
BseDI CCNNGG 1 cut(s) 390
BseGI GGATG 1 cut(s) 163
BseJI GATNNNNATC 1 cut(s) 173
BseLI CCNNNNNNNGG 1 cut(s) 253
BseMI GCAATG 1 cut(s) 105
BseMII CTCAG 1 cut(s) 80
BseXI GCAGC 1 cut(s) 334
BsgI GTGCAG 2 cut(s) 291, 372
BshFI GGCC 3 cut(s) 39, 246, 442
BshNI GGYRCC 2 cut(s) 301, 386
BsiHKAI GWGCWC 1 cut(s) 499
BslI CCNNNNNNNGG 1 cut(s) 253
BsmAI GTCTC 2 cut(s) 128, 322
BsmBI CGTCTC 1 cut(s) 128
BsmI GAATGC 1 cut(s) 25
BsnI GGCC 3 cut(s) 39, 246, 442
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 3 cut(s) 78, 174, 427
BspACI CCGC 3 cut(s) 16, 23, 325
BspANI GGCC 3 cut(s) 39, 246, 442
BspCNI CTCAG 1 cut(s) 81
BspLI GGNNCC 3 cut(s) 10, 303, 388
BspMI ACCTGC 1 cut(s) 23
BspPI GGATC 2 cut(s) 73, 435
BspT107I GGYRCC 2 cut(s) 301, 386
BsrDI GCAATG 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 390
BssMI GATC 3 cut(s) 78, 174, 427
BssSI CACGAG 1 cut(s) 285
BssT1I CCWWGG 1 cut(s) 390
Bst2BI CACGAG 1 cut(s) 285
Bst4CI ACNGT 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 69
BstC8I GCNNGC 2 cut(s) 355, 444
BstDEI CTNAG 2 cut(s) 89, 477
BstF5I GGATG 1 cut(s) 163
BstH2I RGCGCY 2 cut(s) 224, 293
BstHHI GCGC 3 cut(s) 223, 292, 437
BstKTI GATC 3 cut(s) 81, 177, 430
BstMAI GTCTC 2 cut(s) 128, 322
BstMBI GATC 3 cut(s) 78, 174, 427
BstMWI GCNNNNNNNGC 3 cut(s) 29, 409, 443
BstV1I GCAGC 1 cut(s) 334
BstX2I RGATCY 1 cut(s) 78
BstYI RGATCY 1 cut(s) 78
BsuRI GGCC 3 cut(s) 39, 246, 442
BtsCI GGATG 1 cut(s) 163
BveI ACCTGC 1 cut(s) 23
Cac8I GCNNGC 2 cut(s) 355, 444
CfoI GCGC 3 cut(s) 223, 292, 437
Cfr13I GGNCC 1 cut(s) 275
CseI GACGC 1 cut(s) 435
Csp6I GTAC 2 cut(s) 200, 302
CviAII CATG 5 cut(s) 13, 83, 250, 281, 431
CviJI RGCY 9 cut(s) 11, 39, 164, 181, 246, 259, 357, 367, 442
CviKI_1 RGCY 9 cut(s) 11, 39, 164, 181, 246, 259, 357, 367, 442
CviQI GTAC 2 cut(s) 200, 302
DdeI CTNAG 2 cut(s) 89, 477
DpnI GATC 3 cut(s) 80, 176, 429
DpnII GATC 3 cut(s) 78, 174, 427
EaeI YGGCCR 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 69
EarI CTCTTC 1 cut(s) 69
Eco130I CCWWGG 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 275
Eco47III AGCGCT 1 cut(s) 291
EcoO109I RGGNCCY 1 cut(s) 275
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
Esp3I CGTCTC 1 cut(s) 128
FaeI CATG 5 cut(s) 16, 86, 253, 284, 434
FaiI YATR 6 cut(s) 14, 84, 251, 282, 384, 432
FalI AAGNNNNNCTT 1 cut(s) 484
FatI CATG 5 cut(s) 12, 82, 249, 280, 430
Fnu4HI GCNGC 1 cut(s) 323
FokI GGATG 1 cut(s) 170
Fsp4HI GCNGC 1 cut(s) 323
GlaI GCGC 3 cut(s) 222, 291, 436
GluI GCNGC 1 cut(s) 323
GsuI CTGGAG 1 cut(s) 281
HaeII RGCGCY 2 cut(s) 224, 293
HaeIII GGCC 3 cut(s) 39, 246, 442
HgaI GACGC 1 cut(s) 435
HhaI GCGC 3 cut(s) 223, 292, 437
Hin1II CATG 5 cut(s) 16, 86, 253, 284, 434
Hin6I GCGC 3 cut(s) 221, 290, 435
HinP1I GCGC 3 cut(s) 221, 290, 435
HinfI GANTC 1 cut(s) 151
HphI GGTGA 2 cut(s) 37, 466
Hpy188I TCNGA 2 cut(s) 55, 90
Hpy188III TCNNGA 1 cut(s) 155
Hpy99I CGWCG 1 cut(s) 451
HpyAV CCTTC 3 cut(s) 22, 50, 445
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 50
HpyCH4V TGCA 5 cut(s) 272, 284, 346, 353, 403
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 409, 443
HpyF3I CTNAG 2 cut(s) 89, 477
HpySE526I ACGT 1 cut(s) 50
Hsp92II CATG 5 cut(s) 16, 86, 253, 284, 434
HspAI GCGC 3 cut(s) 221, 290, 435
KpnI GGTACC 1 cut(s) 305
Kzo9I GATC 3 cut(s) 78, 174, 427
LmnI GCTCC 3 cut(s) 8, 256, 502
Lsp1109I GCAGC 1 cut(s) 334
MaeII ACGT 1 cut(s) 50
MalI GATC 3 cut(s) 80, 176, 429
MboI GATC 3 cut(s) 78, 174, 427
MboII GAAGA 3 cut(s) 83, 86, 148
MflI RGATCY 1 cut(s) 78
MhlI GDGCHC 1 cut(s) 499
MlsI TGGCCA 1 cut(s) 39
MluNI TGGCCA 1 cut(s) 39
MlyI GAGTC 1 cut(s) 160
MmeI TCCRAC 1 cut(s) 396
MnlI CCTC 6 cut(s) 37, 136, 237, 256, 288, 417
Mox20I TGGCCA 1 cut(s) 39
MscI TGGCCA 1 cut(s) 39
MslI CAYNNNNRTG 1 cut(s) 336
Msp20I TGGCCA 1 cut(s) 39
MspA1I CMGCKG 1 cut(s) 325
Mva1269I GAATGC 1 cut(s) 25
MwoI GCNNNNNNNGC 3 cut(s) 29, 409, 443
NdeII GATC 3 cut(s) 78, 174, 427
NlaIII CATG 5 cut(s) 16, 86, 253, 284, 434
NlaIV GGNNCC 3 cut(s) 10, 303, 388
OliI CACNNNNGTG 1 cut(s) 336
PaqCI CACCTGC 1 cut(s) 23
PctI GAATGC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 253
PkrI GCNGC 1 cut(s) 324
PleI GAGTC 1 cut(s) 159
PpsI GAGTC 1 cut(s) 159
PpuMI RGGWCCY 1 cut(s) 275
Psp5II RGGWCCY 1 cut(s) 275
PspN4I GGNNCC 3 cut(s) 10, 303, 388
PspPI GGNCC 1 cut(s) 275
PspPPI RGGWCCY 1 cut(s) 275
PsuI RGATCY 1 cut(s) 78
RsaI GTAC 2 cut(s) 201, 303
RsaNI GTAC 2 cut(s) 200, 302
RseI CAYNNNNRTG 1 cut(s) 336
SatI GCNGC 1 cut(s) 323
Sau3AI GATC 3 cut(s) 78, 174, 427
Sau96I GGNCC 1 cut(s) 275
ScaI AGTACT 1 cut(s) 201
SchI GAGTC 1 cut(s) 160
SduI GDGCHC 1 cut(s) 499
SinI GGWCC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 336
SsiI CCGC 3 cut(s) 16, 23, 325
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 1 cut(s) 53
TaqI TCGA 2 cut(s) 235, 449
TatI WGTACW 1 cut(s) 199
TseI GCWGC 1 cut(s) 322
TspDTI ATGAA 2 cut(s) 254, 284
Van91I CCANNNNNTGG 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 275
ZrmI AGTACT 1 cut(s) 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.