Rmu_sc0004823.1_g000050

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004823.1
OG0000385
Physical Location & Seq
Forward (+)
135665 .. 135880
216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004823.1_g000050.1.cds

Sequence Viewer

Length: 216 bp
atgcgtgttgcattcaatggccatctgcatgagatggaagagaggatgaagacgtccatccatgagatggaggccctttcgcaagaggcggaggcaaagtttgaggttcttgatgccgacattggattgctaaagcgcgctagcatcgatgaaggtgggataagacaagaggtagtgttcccaagatcaaggtaccggaaccaaagtctttcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

8.19

Weight (kDa)

5.55

Isoelectric Point (pI)

40.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000385)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g23713 FvH4_1g25744 FvH4_2g00261 FvH4_2g00262 FvH4_2g15681 FvH4_2g17851 FvH4_2g35550 FvH4_3g05280 FvH4_3g10531 FvH4_3g25910 FvH4_3g28953 FvH4_3g33371 FvH4_3g33536 FvH4_3g36090 FvH4_4g03471 FvH4_4g03480 FvH4_4g06701 FvH4_4g19351 FvH4_4g34281 FvH4_5g00040 FvH4_5g03811 FvH4_5g03812 FvH4_5g11822 FvH4_5g30921 FvH4_5g31701 FvH4_6g12161 FvH4_6g15222 FvH4_6g15223 FvH4_6g17701 FvH4_6g17710 FvH4_6g19301 FvH4_6g33011 FvH4_6g34501 FvH4_6g50161 FvH4_7g04111 FvH4_7g04120 FvH4_7g04121 FvH4_7g04122 FvH4_7g04123 FvH4_7g28231 FvH4_c7g00010
malus_domestica MD12G1084200.v1.1
prunus_persica Prupe.1G206200_v2.0.a1 Prupe.8G085600_v2.0.a1
pyrus_communis pycom01g11080 pycom02g20500 pycom09g18370 pycom12555g00210 pycom13g23120 pycom14g10590 pycom16g17620 pycom16g22750
rosa_chinensis RchiOBHm_Chr2g0137481 RchiOBHm_Chr6g0251961 RchiOBHm_Chr7g0185821
rosa_laevigata RLG00000005585 RLG00000010281 RLG00000010912 RLG00000030342 RLG00000034281
rosa_multiflora Rmu_sc0000096.1_g000010 Rmu_sc0002481.1_g000045 Rmu_sc0003598.1_g000009 Rmu_sc0003863.1_g000019 Rmu_sc0003973.1_g000002 Rmu_sc0004823.1_g000050 Rmu_sc0005621.1_g000007 Rmu_sc0006537.1_g000030 Rmu_sc0006608.1_g000014 Rmu_sc0008506.1_g000007 Rmu_sc0014428.1_g000001 Rmu_sc0035437.1_g000001 Rmu_ssc0000396.1_g000022
rosa_roxburghii Rroxscaffold_175G00432300 Rroxscaffold_17G00435390 Rroxscaffold_27G00446590 Rroxscaffold_29G00441820 Rroxscaffold_31G00438110 Rroxscaffold_32G00442750 Rroxscaffold_33G00439810 Rroxscaffold_37G00445160 Rroxscaffold_4G00306500 Rroxscaffold_4G00327700 Rroxscaffold_4G00332630 Rroxscaffold_52G00439360 Rroxscaffold_63G00444420 Rroxscaffold_76G00448580 Rroxscaffold_7G00156270
rosa_rugosa Rorug03G0295200
rosa_samantha Rh1BG433700 Rh1CG115400 Rh2AG676300 Rh2CG341800 Rh2DG381400 Rh3BG370100 Rh3BG370200 Rh4AG441600 Rh4BG076500 Rh4BG107400 Rh5BG005600 Rh6BG010100 Rh7BG000200
rosa_wichuraiana Rw0G003820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 56
Acc65I GGTACC 1 cut(s) 192
AccB1I GGYRCC 1 cut(s) 192
AccB7I CCANNNNNTGG 1 cut(s) 67
AccII CGCG 1 cut(s) 138
AciI CCGC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 19
AcyI GRCGYC 1 cut(s) 53
AfaI GTAC 1 cut(s) 194
AfiI CCNNNNNNNGG 1 cut(s) 67
AgsI TTSAA 1 cut(s) 16
AoxI GGCC 2 cut(s) 19, 72
Asp718I GGTACC 1 cut(s) 192
AspLEI GCGC 2 cut(s) 138, 140
AspS9I GGNCC 1 cut(s) 73
AsuNHI GCTAGC 1 cut(s) 140
BalI TGGCCA 1 cut(s) 21
BanI GGYRCC 1 cut(s) 192
BbsI GAAGAC 1 cut(s) 56
BccI CCATC 4 cut(s) 28, 30, 61, 65
BfaI CTAG 2 cut(s) 141, 214
BmgT120I GGNCC 1 cut(s) 73
BmiI GGNNCC 2 cut(s) 194, 200
BmsI GCATC 2 cut(s) 103, 153
BmtI GCTAGC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 56
Bsa29I ATCGAT 1 cut(s) 147
BsaHI GRCGYC 1 cut(s) 53
BsaWI WCCGGW 1 cut(s) 195
BsaXI ACNNNNNCTCC 2 cut(s) 83, 113
Bsc4I CCNNNNNNNGG 1 cut(s) 67
BseCI ATCGAT 1 cut(s) 147
BseGI GGATG 2 cut(s) 51, 57
BseLI CCNNNNNNNGG 1 cut(s) 67
BsePI GCGCGC 1 cut(s) 136
Bsh1236I CGCG 1 cut(s) 138
BshFI GGCC 2 cut(s) 21, 74
BshNI GGYRCC 1 cut(s) 192
BshVI ATCGAT 1 cut(s) 147
BsiSI CCGG 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 67
BsmI GAATGC 1 cut(s) 11
BsnI GGCC 2 cut(s) 21, 74
Bsp143I GATC 1 cut(s) 185
BspACI CCGC 1 cut(s) 89
BspANI GGCC 2 cut(s) 21, 74
BspDI ATCGAT 1 cut(s) 147
BspFNI CGCG 1 cut(s) 138
BspLI GGNNCC 2 cut(s) 194, 200
BspOI GCTAGC 1 cut(s) 144
BspT107I GGYRCC 1 cut(s) 192
BssHII GCGCGC 1 cut(s) 136
BssMI GATC 1 cut(s) 185
BssNI GRCGYC 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 33
BstACI GRCGYC 1 cut(s) 53
BstC8I GCNNGC 2 cut(s) 138, 142
BstF5I GGATG 2 cut(s) 51, 57
BstFNI CGCG 1 cut(s) 138
BstHHI GCGC 2 cut(s) 138, 140
BstKTI GATC 1 cut(s) 188
BstMBI GATC 1 cut(s) 185
BstUI CGCG 1 cut(s) 138
BstV2I GAAGAC 1 cut(s) 56
Bsu15I ATCGAT 1 cut(s) 147
BsuRI GGCC 2 cut(s) 21, 74
BsuTUI ATCGAT 1 cut(s) 147
BtsCI GGATG 2 cut(s) 51, 57
Cac8I GCNNGC 2 cut(s) 138, 142
CfoI GCGC 2 cut(s) 138, 140
Cfr13I GGNCC 1 cut(s) 73
ClaI ATCGAT 1 cut(s) 147
Csp6I GTAC 1 cut(s) 193
CviAII CATG 2 cut(s) 29, 62
CviJI RGCY 2 cut(s) 21, 74
CviKI_1 RGCY 2 cut(s) 21, 74
CviQI GTAC 1 cut(s) 193
DpnI GATC 1 cut(s) 187
DpnII GATC 1 cut(s) 185
EaeI YGGCCR 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
EciI GGCGGA 1 cut(s) 104
EcoO109I RGGNCCY 1 cut(s) 73
FaeI CATG 2 cut(s) 32, 65
FaiI YATR 2 cut(s) 30, 63
FatI CATG 2 cut(s) 28, 61
FokI GGATG 2 cut(s) 44, 58
FspBI CTAG 2 cut(s) 141, 214
GlaI GCGC 2 cut(s) 137, 139
HaeIII GGCC 2 cut(s) 21, 74
HapII CCGG 1 cut(s) 196
HhaI GCGC 2 cut(s) 138, 140
Hin1I GRCGYC 1 cut(s) 53
Hin1II CATG 2 cut(s) 32, 65
Hin6I GCGC 2 cut(s) 136, 138
HinP1I GCGC 2 cut(s) 136, 138
HpaII CCGG 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 53
HpyCH4V TGCA 2 cut(s) 11, 28
HpySE526I ACGT 1 cut(s) 53
Hsp92I GRCGYC 1 cut(s) 53
Hsp92II CATG 2 cut(s) 32, 65
HspAI GCGC 2 cut(s) 136, 138
KpnI GGTACC 1 cut(s) 196
Kzo9I GATC 1 cut(s) 185
LpnPI CCDG 1 cut(s) 209
LweI GCATC 2 cut(s) 103, 153
MaeI CTAG 2 cut(s) 141, 214
MaeII ACGT 1 cut(s) 53
MalI GATC 1 cut(s) 187
MboI GATC 1 cut(s) 185
MboII GAAGA 2 cut(s) 50, 61
MlsI TGGCCA 1 cut(s) 21
MluNI TGGCCA 1 cut(s) 21
MnlI CCTC 6 cut(s) 36, 64, 79, 85, 97, 163
Mox20I TGGCCA 1 cut(s) 21
MscI TGGCCA 1 cut(s) 21
MslI CAYNNNNRTG 1 cut(s) 27
Msp20I TGGCCA 1 cut(s) 21
MspI CCGG 1 cut(s) 196
Mva1269I GAATGC 1 cut(s) 11
MvnI CGCG 1 cut(s) 138
NdeII GATC 1 cut(s) 185
NheI GCTAGC 1 cut(s) 140
NlaIII CATG 2 cut(s) 32, 65
NlaIV GGNNCC 2 cut(s) 194, 200
PauI GCGCGC 1 cut(s) 136
PctI GAATGC 1 cut(s) 11
PflMI CCANNNNNTGG 1 cut(s) 67
PspN4I GGNNCC 2 cut(s) 194, 200
PspPI GGNCC 1 cut(s) 73
PteI GCGCGC 1 cut(s) 136
RsaI GTAC 1 cut(s) 194
RsaNI GTAC 1 cut(s) 193
RseI CAYNNNNRTG 1 cut(s) 27
Sau3AI GATC 1 cut(s) 185
Sau96I GGNCC 1 cut(s) 73
SetI ASST 5 cut(s) 56, 108, 157, 174, 194
SfaNI GCATC 2 cut(s) 103, 153
SmiMI CAYNNNNRTG 1 cut(s) 27
SsiI CCGC 1 cut(s) 89
SspMI CTAG 2 cut(s) 141, 214
TaiI ACGT 1 cut(s) 56
TaqI TCGA 1 cut(s) 147
TspDTI ATGAA 2 cut(s) 62, 165
Van91I CCANNNNNTGG 1 cut(s) 67
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
XspI CTAG 2 cut(s) 141, 214
ZraI GACGTC 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.