MD00G1165900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr00
OG0000513
Physical Location & Seq
Forward (+)
37866301 .. 37867527
1227 bp
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UTR
Exon/CDS
Intron
MD00G1165900.v1.1.491

Sequence Viewer

Length: 159 bp
ATGTTATGCAGCTCTTCTTCTGTCAAATTGTTCAAGTACTGTTCATCGCTTTCTACTAGGGTGTCACTTGCTTTCTGCTGCATTCTAAGAGATTGGAGTTCTTGGTTCATTTTGGTAAACTTATTAAGTAATGACTCATGGTCCTTAGAAATGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

53

Amino Acids

5.96

Weight (kDa)

7.65

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 38
AgsI TTSAA 1 cut(s) 34
AhdI GACNNNNNGTC 1 cut(s) 139
AluBI AGCT 1 cut(s) 12
AluI AGCT 1 cut(s) 12
ApeKI GCWGC 2 cut(s) 9, 78
AspS9I GGNCC 1 cut(s) 141
AvaII GGWCC 1 cut(s) 141
BbvI GCAGC 2 cut(s) 21, 65
BfaI CTAG 1 cut(s) 57
BisI GCNGC 2 cut(s) 10, 79
BlsI GCNGC 2 cut(s) 11, 80
BmcAI AGTACT 1 cut(s) 38
Bme18I GGWCC 1 cut(s) 141
BmeRI GACNNNNNGTC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 141
BseXI GCAGC 2 cut(s) 21, 65
BsmI GAATGC 1 cut(s) 81
BspQI GCTCTTC 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 41
Bst6I CTCTTC 1 cut(s) 19
BstDEI CTNAG 2 cut(s) 86, 145
BstV1I GCAGC 2 cut(s) 21, 65
BtgZI GCGATG 1 cut(s) 30
Cfr13I GGNCC 1 cut(s) 141
Csp6I GTAC 1 cut(s) 37
CviAII CATG 1 cut(s) 138
CviJI RGCY 1 cut(s) 12
CviKI_1 RGCY 1 cut(s) 12
CviQI GTAC 1 cut(s) 37
DdeI CTNAG 2 cut(s) 86, 145
DriI GACNNNNNGTC 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 19
Eam1105I GACNNNNNGTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 19
Eco47I GGWCC 1 cut(s) 141
FaeI CATG 1 cut(s) 141
FaiI YATR 2 cut(s) 7, 139
FatI CATG 1 cut(s) 137
Fnu4HI GCNGC 2 cut(s) 10, 79
Fsp4HI GCNGC 2 cut(s) 10, 79
FspBI CTAG 1 cut(s) 57
FspEI CC 6 cut(s) 43, 44, 79, 88, 98, 124
GluI GCNGC 2 cut(s) 10, 79
Hin1II CATG 1 cut(s) 141
HinfI GANTC 1 cut(s) 134
Hpy166II GTNNAC 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 41
HpyCH4V TGCA 2 cut(s) 9, 81
HpyF3I CTNAG 2 cut(s) 86, 145
Hsp92II CATG 1 cut(s) 141
LguI GCTCTTC 1 cut(s) 19
Lsp1109I GCAGC 2 cut(s) 21, 65
MaeI CTAG 1 cut(s) 57
MaeIII GTNAC 1 cut(s) 63
MboII GAAGA 2 cut(s) 6, 9
MluCI AATT 1 cut(s) 26
MlyI GAGTC 1 cut(s) 128
MseI TTAA 1 cut(s) 125
Mva1269I GAATGC 1 cut(s) 81
NlaIII CATG 1 cut(s) 141
NmuCI GTSAC 1 cut(s) 63
PciSI GCTCTTC 1 cut(s) 19
PctI GAATGC 1 cut(s) 81
PkrI GCNGC 2 cut(s) 11, 80
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PspPI GGNCC 1 cut(s) 141
RsaI GTAC 1 cut(s) 38
RsaNI GTAC 1 cut(s) 37
SapI GCTCTTC 1 cut(s) 19
SaqAI TTAA 1 cut(s) 125
SatI GCNGC 2 cut(s) 10, 79
Sau96I GGNCC 1 cut(s) 141
ScaI AGTACT 1 cut(s) 38
SchI GAGTC 1 cut(s) 128
SetI ASST 1 cut(s) 14
SgeI CNNG 5 cut(s) 46, 69, 80, 114, 150
SinI GGWCC 1 cut(s) 141
Sse9I AATT 1 cut(s) 26
SspMI CTAG 1 cut(s) 57
TaaI ACNGT 1 cut(s) 41
TasI AATT 1 cut(s) 26
TatI WGTACW 1 cut(s) 36
Tru1I TTAA 1 cut(s) 125
Tru9I TTAA 1 cut(s) 125
TseFI GTSAC 1 cut(s) 63
TseI GCWGC 2 cut(s) 9, 78
Tsp45I GTSAC 1 cut(s) 63
TspDTI ATGAA 2 cut(s) 33, 97
VpaK11BI GGWCC 1 cut(s) 141
XspI CTAG 1 cut(s) 57
ZrmI AGTACT 1 cut(s) 38
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.