pycom17g16320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000513
Physical Location & Seq
Forward (+)
14490572 .. 14491857
1286 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g16320.2

Sequence Viewer

Length: 903 bp
ATGTACGTGTTGATGCTTTACCGCCCAACATTTCGTGCCATACAGCACTGCCGACCTTATTACCGTCCTATAAAATTTTCCCTTGAGCTTCAGTGGCATACGACGGTCACACAACACGCTGGATGCATTCTTCCACTTCATCCATTTAGCTTATATTCTATGATTCTTGGTAGTGAAAGCGGCTGCTCTTTGGTACTTCCTGATCTTCGATCCTCACCCCTAACTCATTTTGTCCAACACTTCTCTCCAAAGGTTAAGCTTTGCATTTACCCCTTCTTGAGTTTCATCTATCAACACTATATCGTCCCGTTAACTCATCCATTCCCAATGCAAAAAGGTAAGGACTTAAGGATGAGCCTTGATGTAACCCTACAATTATGGGGAAGCTTTGGGTTTGTCCTTCATGAGTTCTTACAATATGCTACTCGTACTCCTTTCTTCTCCAAAATCCTCCAAAGAATGTCTCTTGGGACCCTATCATACGCTTTTTCCAAATCTATAAAGACCATGCGTAAATCCTTTTCCTATCTCTATATCTTTCCATCAATCTTCGAACCCGAATTGGTTGTCCGAAACCCGTGTCTCTTGCCTCAATTTATGCTCAATGACTCTCTCCCAGAGCAATTTTGTACGTCGCCTTTATTCTTCTTCTTCATTTTCAAAATCCTATTGAAAAGGTCTGTGAGCCATGCTATACCCGTCTCTCCCAAGACTTTTCACACTTCAATCGGTATATCATCTGAGCCCACTGTTTTTCTATTTACTCAACTCCCCCAAAGAAGTACTCATTTCATGTCCTTCATTGAAAAGATTATGAAAATAACCTCTCCATCTGTCTTTGACCGCGTTCTCTGTAGCAAGAACCTTTCCATCCTCATCCTTGATGCACCTCACTTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

301

Amino Acids

34.84

Weight (kDa)

9.58

Isoelectric Point (pI)

56.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 846
AciI CCGC 3 cut(s) 22, 180, 844
AclWI GGATC 1 cut(s) 204
AcsI RAATTY 1 cut(s) 74
AcuI CTGAAG 1 cut(s) 74
AfaI GTAC 5 cut(s) 5, 195, 430, 631, 784
AflII CTTAAG 1 cut(s) 346
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 4 cut(s) 661, 673, 726, 806
AluBI AGCT 4 cut(s) 88, 150, 259, 387
AluI AGCT 4 cut(s) 88, 150, 259, 387
Alw26I GTCTC 3 cut(s) 468, 587, 706
AlwI GGATC 1 cut(s) 204
ApeKI GCWGC 1 cut(s) 183
ApoI RAATTY 1 cut(s) 74
ArsI GACNNNNNNTTYG 4 cut(s) 552, 565, 584, 597
AspS9I GGNCC 1 cut(s) 471
AsuHPI GGTGA 1 cut(s) 207
AsuII TTCGAA 1 cut(s) 552
AvaII GGWCC 1 cut(s) 471
BanII GRGCYC 1 cut(s) 747
BbvI GCAGC 1 cut(s) 170
BccI CCATC 3 cut(s) 550, 838, 878
BcoDI GTCTC 3 cut(s) 468, 587, 706
BfmI CTRYAG 1 cut(s) 853
BfrI CTTAAG 1 cut(s) 346
BisI GCNGC 2 cut(s) 181, 184
BlsI GCNGC 2 cut(s) 182, 185
BmcAI AGTACT 1 cut(s) 784
Bme18I GGWCC 1 cut(s) 471
BmgT120I GGNCC 1 cut(s) 471
BmiI GGNNCC 2 cut(s) 472, 473
BmsI GCATC 3 cut(s) 3, 113, 874
Bpu14I TTCGAA 1 cut(s) 552
BpuEI CTTGAG 2 cut(s) 104, 298
BsaAI YACGTR 1 cut(s) 7
BsaXI ACNNNNNCTCC 2 cut(s) 415, 445
BseGI GGATG 6 cut(s) 128, 139, 316, 357, 870, 876
BseMII CTCAG 1 cut(s) 732
BseXI GCAGC 1 cut(s) 170
Bsh1236I CGCG 1 cut(s) 846
BslFI GGGAC 2 cut(s) 290, 484
BsmAI GTCTC 3 cut(s) 468, 587, 706
BsmBI CGTCTC 1 cut(s) 706
BsmFI GGGAC 2 cut(s) 290, 484
BsmI GAATGC 1 cut(s) 126
Bsp119I TTCGAA 1 cut(s) 552
Bsp1286I GDGCHC 1 cut(s) 747
Bsp143I GATC 2 cut(s) 202, 209
BspACI CCGC 3 cut(s) 22, 180, 844
BspCNI CTCAG 1 cut(s) 733
BspFNI CGCG 1 cut(s) 846
BspHI TCATGA 1 cut(s) 403
BspLI GGNNCC 2 cut(s) 472, 473
BspPI GGATC 1 cut(s) 204
BspT104I TTCGAA 1 cut(s) 552
BspTI CTTAAG 1 cut(s) 346
BssMI GATC 2 cut(s) 202, 209
Bst4CI ACNGT 3 cut(s) 65, 106, 751
BstAFI CTTAAG 1 cut(s) 346
BstBAI YACGTR 1 cut(s) 7
BstBI TTCGAA 1 cut(s) 552
BstDEI CTNAG 1 cut(s) 741
BstF5I GGATG 6 cut(s) 128, 139, 316, 357, 870, 876
BstFNI CGCG 1 cut(s) 846
BstKTI GATC 2 cut(s) 205, 212
BstMAI GTCTC 3 cut(s) 468, 587, 706
BstMBI GATC 2 cut(s) 202, 209
BstMWI GCNNNNNNNGC 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 853
BstUI CGCG 1 cut(s) 846
BstV1I GCAGC 1 cut(s) 170
BtsCI GGATG 6 cut(s) 128, 139, 316, 357, 870, 876
BtsI GCAGTG 1 cut(s) 46
BtsIMutI CAGTG 3 cut(s) 46, 98, 747
CciI TCATGA 1 cut(s) 403
Cfr13I GGNCC 1 cut(s) 471
Csp6I GTAC 5 cut(s) 4, 194, 429, 630, 783
CviAII CATG 4 cut(s) 404, 508, 689, 793
CviJI RGCY 8 cut(s) 88, 150, 183, 259, 357, 387, 687, 745
CviKI_1 RGCY 8 cut(s) 88, 150, 183, 259, 357, 387, 687, 745
CviQI GTAC 5 cut(s) 4, 194, 429, 630, 783
DdeI CTNAG 1 cut(s) 741
DpnI GATC 2 cut(s) 204, 211
DpnII GATC 2 cut(s) 202, 209
Eco24I GRGCYC 1 cut(s) 747
Eco47I GGWCC 1 cut(s) 471
Eco57I CTGAAG 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 471
EcoT22I ATGCAT 1 cut(s) 128
EcoT38I GRGCYC 1 cut(s) 747
Esp3I CGTCTC 1 cut(s) 706
FaeI CATG 4 cut(s) 407, 511, 692, 796
FaqI GGGAC 2 cut(s) 290, 484
FatI CATG 4 cut(s) 403, 507, 688, 792
Fnu4HI GCNGC 2 cut(s) 181, 184
FokI GGATG 6 cut(s) 126, 135, 303, 364, 857, 863
FriOI GRGCYC 1 cut(s) 747
Fsp4HI GCNGC 2 cut(s) 181, 184
GluI GCNGC 2 cut(s) 181, 184
Hin1II CATG 4 cut(s) 407, 511, 692, 796
HincII GTYRAC 1 cut(s) 312
HindII GTYRAC 1 cut(s) 312
HindIII AAGCTT 2 cut(s) 257, 385
HinfI GANTC 2 cut(s) 163, 608
HpaI GTTAAC 1 cut(s) 312
HphI GGTGA 1 cut(s) 207
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 2 cut(s) 572, 742
Hpy188III TCNNGA 3 cut(s) 200, 277, 404
Hpy8I GTNNAC 1 cut(s) 312
Hpy99I CGWCG 2 cut(s) 106, 637
HpyAV CCTTC 3 cut(s) 283, 410, 808
HpyCH4III ACNGT 3 cut(s) 65, 106, 751
HpyCH4IV ACGT 2 cut(s) 6, 632
HpyCH4V TGCA 4 cut(s) 126, 264, 331, 887
HpyF10VI GCNNNNNNNGC 1 cut(s) 94
HpyF3I CTNAG 1 cut(s) 741
HpySE526I ACGT 2 cut(s) 6, 632
Hsp92II CATG 4 cut(s) 407, 511, 692, 796
KflI GGGWCCC 1 cut(s) 471
KspAI GTTAAC 1 cut(s) 312
Kzo9I GATC 2 cut(s) 202, 209
LpnPI CCDG 3 cut(s) 105, 213, 630
Lsp1109I GCAGC 1 cut(s) 170
LweI GCATC 3 cut(s) 3, 113, 874
MaeII ACGT 2 cut(s) 6, 632
MaeIII GTNAC 2 cut(s) 106, 364
MalI GATC 2 cut(s) 204, 211
MboI GATC 2 cut(s) 202, 209
MboII GAAGA 7 cut(s) 122, 197, 430, 541, 637, 640, 643
MhlI GDGCHC 1 cut(s) 747
MluCI AATT 5 cut(s) 74, 374, 560, 593, 623
MlyI GAGTC 1 cut(s) 602
MmeI TCCRAC 1 cut(s) 259
MnlI CCTC 6 cut(s) 223, 461, 600, 835, 884, 900
Mph1103I ATGCAT 1 cut(s) 128
MseI TTAA 3 cut(s) 255, 311, 347
MspCI CTTAAG 1 cut(s) 346
Mva1269I GAATGC 1 cut(s) 126
MvnI CGCG 1 cut(s) 846
MwoI GCNNNNNNNGC 1 cut(s) 94
NdeII GATC 2 cut(s) 202, 209
NlaIII CATG 4 cut(s) 407, 511, 692, 796
NlaIV GGNNCC 2 cut(s) 472, 473
NmuCI GTSAC 1 cut(s) 106
NsiI ATGCAT 1 cut(s) 128
NspV TTCGAA 1 cut(s) 552
PagI TCATGA 1 cut(s) 403
PctI GAATGC 1 cut(s) 126
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 2 cut(s) 182, 185
PleI GAGTC 1 cut(s) 602
PpsI GAGTC 1 cut(s) 602
Ppu21I YACGTR 1 cut(s) 7
PpuMI RGGWCCY 1 cut(s) 471
Psp5II RGGWCCY 1 cut(s) 471
PspN4I GGNNCC 2 cut(s) 472, 473
PspPI GGNCC 1 cut(s) 471
PspPPI RGGWCCY 1 cut(s) 471
RsaI GTAC 5 cut(s) 5, 195, 430, 631, 784
RsaNI GTAC 5 cut(s) 4, 194, 429, 630, 783
SaqAI TTAA 3 cut(s) 255, 311, 347
SatI GCNGC 2 cut(s) 181, 184
Sau3AI GATC 2 cut(s) 202, 209
Sau96I GGNCC 1 cut(s) 471
ScaI AGTACT 1 cut(s) 784
SchI GAGTC 1 cut(s) 602
SduI GDGCHC 1 cut(s) 747
SfaNI GCATC 3 cut(s) 3, 113, 874
SfcI CTRYAG 1 cut(s) 853
SfuI TTCGAA 1 cut(s) 552
SinI GGWCC 1 cut(s) 471
SmlI CTYRAG 3 cut(s) 83, 277, 346
SmoI CTYRAG 3 cut(s) 83, 277, 346
Sse9I AATT 5 cut(s) 74, 374, 560, 593, 623
SsiI CCGC 3 cut(s) 22, 180, 844
TaaI ACNGT 3 cut(s) 65, 106, 751
TaiI ACGT 2 cut(s) 9, 635
TaqI TCGA 2 cut(s) 208, 552
TasI AATT 5 cut(s) 74, 374, 560, 593, 623
TatI WGTACW 1 cut(s) 782
TauI GCSGC 1 cut(s) 183
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 3 cut(s) 255, 311, 347
Tru9I TTAA 3 cut(s) 255, 311, 347
TscAI CASTG 3 cut(s) 53, 98, 754
TseFI GTSAC 1 cut(s) 106
TseI GCWGC 1 cut(s) 183
Tsp45I GTSAC 1 cut(s) 106
TspDTI ATGAA 7 cut(s) 128, 274, 392, 643, 781, 790, 830
TspRI CASTG 3 cut(s) 53, 98, 754
Vha464I CTTAAG 1 cut(s) 346
VpaK11BI GGWCC 1 cut(s) 471
XapI RAATTY 1 cut(s) 74
ZrmI AGTACT 1 cut(s) 784
Zsp2I ATGCAT 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.