pycom11g16660

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Forward (+)
18374513 .. 18375273
761 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g16660.1

Sequence Viewer

Length: 228 bp
ATGAGTCCAACCATACCCATTTCAGTTCAAGCTTGTAGGAAGCTTGGTGAGGTCCCTAGGAGGCTCGGGGTAGTTCGTTTGAAGGTTTTGGACGTCGGGATCACGAGTTTCGAGTTTGGCCGAAGTTGGGGTGATTTTACAGTTGTTTCGCATATAGGTGATACCTATCCCGAGGACGAGCGTGGTCACTCGAGGCAGGGGGGCTACGACCCTTCCACATATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.35

Weight (kDa)

6.71

Isoelectric Point (pI)

53.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 96
AclWI GGATC 1 cut(s) 107
AcoI YGGCCR 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 127
AgsI TTSAA 2 cut(s) 29, 82
AluBI AGCT 2 cut(s) 32, 43
AluI AGCT 2 cut(s) 32, 43
AlwI GGATC 1 cut(s) 107
Ama87I CYCGRG 3 cut(s) 65, 170, 190
AoxI GGCC 1 cut(s) 118
AspA2I CCTAGG 1 cut(s) 56
AspS9I GGNCC 1 cut(s) 52
AsuHPI GGTGA 3 cut(s) 59, 143, 170
AvaI CYCGRG 3 cut(s) 65, 170, 190
AvaII GGWCC 1 cut(s) 52
AvrII CCTAGG 1 cut(s) 56
BauI CACGAG 1 cut(s) 103
BfaI CTAG 1 cut(s) 57
BlnI CCTAGG 1 cut(s) 56
Bme18I GGWCC 1 cut(s) 52
BmeT110I CYCGRG 3 cut(s) 65, 170, 190
BmgT120I GGNCC 1 cut(s) 52
BmiI GGNNCC 1 cut(s) 54
BsaBI GATNNNNATC 1 cut(s) 165
BsaHI GRCGYC 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 56, 171
Bsc4I CCNNNNNNNGG 1 cut(s) 127
Bse8I GATNNNNATC 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 56, 171
BseJI GATNNNNATC 1 cut(s) 165
BseLI CCNNNNNNNGG 1 cut(s) 127
BshFI GGCC 1 cut(s) 120
BsiHKCI CYCGRG 3 cut(s) 65, 170, 190
BslFI GGGAC 1 cut(s) 38
BslI CCNNNNNNNGG 1 cut(s) 127
BsmFI GGGAC 1 cut(s) 38
BsnI GGCC 1 cut(s) 120
BsoBI CYCGRG 3 cut(s) 65, 170, 190
Bsp143I GATC 1 cut(s) 99
BspANI GGCC 1 cut(s) 120
BspLI GGNNCC 1 cut(s) 54
BspPI GGATC 1 cut(s) 107
BssECI CCNNGG 2 cut(s) 56, 171
BssMI GATC 1 cut(s) 99
BssNI GRCGYC 1 cut(s) 93
BssSI CACGAG 1 cut(s) 103
BssT1I CCWWGG 1 cut(s) 56
Bst2BI CACGAG 1 cut(s) 103
Bst4CI ACNGT 1 cut(s) 142
BstACI GRCGYC 1 cut(s) 93
BstKTI GATC 1 cut(s) 102
BstMBI GATC 1 cut(s) 99
BsuRI GGCC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 52
CviJI RGCY 5 cut(s) 32, 43, 64, 120, 204
CviKI_1 RGCY 5 cut(s) 32, 43, 64, 120, 204
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 56
Eco47I GGWCC 1 cut(s) 52
Eco88I CYCGRG 3 cut(s) 65, 170, 190
EcoO109I RGGNCCY 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 56
ErhI CCWWGG 1 cut(s) 56
FaiI YATR 4 cut(s) 14, 153, 155, 220
FaqI GGGAC 1 cut(s) 38
FspBI CTAG 1 cut(s) 57
HaeIII GGCC 1 cut(s) 120
Hin1I GRCGYC 1 cut(s) 93
HindIII AAGCTT 2 cut(s) 30, 41
HinfI GANTC 1 cut(s) 4
HphI GGTGA 3 cut(s) 59, 143, 170
Hpy188III TCNNGA 3 cut(s) 97, 103, 170
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 76, 222
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 93
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 93
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 1 cut(s) 182
MaeI CTAG 1 cut(s) 57
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 185
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 1 cut(s) 32
MnlI CCTC 4 cut(s) 43, 54, 166, 186
MslI CAYNNNNRTG 2 cut(s) 156, 223
NdeII GATC 1 cut(s) 99
NlaIV GGNNCC 1 cut(s) 54
NmuCI GTSAC 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 190
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PpuMI RGGWCCY 1 cut(s) 52
Psp5II RGGWCCY 1 cut(s) 52
PspN4I GGNNCC 1 cut(s) 54
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
PspXI VCTCGAGB 1 cut(s) 190
RseI CAYNNNNRTG 2 cut(s) 156, 223
Sau3AI GATC 1 cut(s) 99
Sau96I GGNCC 1 cut(s) 52
SchI GAGTC 1 cut(s) 13
SetI ASST 7 cut(s) 34, 45, 54, 87, 96, 160, 167
Sfr274I CTCGAG 1 cut(s) 190
SinI GGWCC 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 190
SmiMI CAYNNNNRTG 2 cut(s) 156, 223
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
SspMI CTAG 1 cut(s) 57
StyI CCWWGG 1 cut(s) 56
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 96
TaqI TCGA 2 cut(s) 111, 191
TseFI GTSAC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 185
VpaK11BI GGWCC 1 cut(s) 52
XhoI CTCGAG 1 cut(s) 190
XmaJI CCTAGG 1 cut(s) 56
XspI CTAG 1 cut(s) 57
ZraI GACGTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.