pycom13g11350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000513
Physical Location & Seq
Forward (+)
7794355 .. 7795408
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g11350.2

Sequence Viewer

Length: 396 bp
ATGTGTTACCTTATTGCCCCTAGTTCGTTTTTGTCACGTTGTGGGTTGCTTTGTGTGGTGTGGCATGTGTTGGACCACACACACACTCCCACACACACAGACACTGTCTCTCTCTCTCCTTCTGTCTTCTCTCTGTCTCTCCCGTGCTCTCTCCCTCCCTTCTTCCTTAGAAACGGTACGGACAACCCCAAAACCCCTCAAATCTTAGTAGATCGAGGGAGCCAGGTACACCATCGAGCTCGTGAAGCTGAGAGGAGTCTAGTGGTACCATTTTCAGTTGTGTTGGTGAGGTCCCAAGGAGCCTCGGAGTGCTTCGTTGGACAAAATTGGACGTCGGGATCGTCCTGTTCTAAGTTGGCCGGTTTTGGAGAAATTGCACAGTTGTTTCGCATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.34

Weight (kDa)

8.31

Isoelectric Point (pI)

43.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 335
Acc65I GGTACC 1 cut(s) 265
AccB1I GGYRCC 1 cut(s) 265
AclWI GGATC 1 cut(s) 346
AcoI YGGCCR 1 cut(s) 357
AcyI GRCGYC 1 cut(s) 332
AdeI CACNNNGTG 1 cut(s) 41
AfaI GTAC 3 cut(s) 178, 228, 267
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 2 cut(s) 239, 248
AluI AGCT 2 cut(s) 239, 248
Alw21I GWGCWC 2 cut(s) 149, 241
Alw26I GTCTC 2 cut(s) 112, 141
AlwI GGATC 1 cut(s) 346
AlwNI CAGNNNCTG 1 cut(s) 104
AoxI GGCC 1 cut(s) 357
Asp718I GGTACC 1 cut(s) 265
AspS9I GGNCC 2 cut(s) 73, 291
AsuHPI GGTGA 1 cut(s) 298
AvaII GGWCC 2 cut(s) 73, 291
BanI GGYRCC 1 cut(s) 265
BanII GRGCYC 1 cut(s) 241
BauI CACGAG 1 cut(s) 240
BbsI GAAGAC 1 cut(s) 118
Bbv12I GWGCWC 2 cut(s) 149, 241
BccI CCATC 1 cut(s) 240
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 2 cut(s) 112, 141
BfaI CTAG 2 cut(s) 21, 260
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 2 cut(s) 73, 291
BmgT120I GGNCC 2 cut(s) 73, 291
BmiI GGNNCC 4 cut(s) 221, 267, 293, 301
BmrFI CCNGG 1 cut(s) 224
BpiI GAAGAC 1 cut(s) 118
BsaHI GRCGYC 1 cut(s) 332
BsaJI CCNNGG 2 cut(s) 295, 303
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bse118I RCCGGY 1 cut(s) 359
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 2 cut(s) 295, 303
BseMII CTCAG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 268
BshFI GGCC 1 cut(s) 359
BshNI GGYRCC 1 cut(s) 265
BsiHKAI GWGCWC 2 cut(s) 149, 241
BsiSI CCGG 1 cut(s) 360
BslFI GGGAC 1 cut(s) 277
BsmAI GTCTC 2 cut(s) 112, 141
BsmFI GGGAC 1 cut(s) 277
BsnI GGCC 1 cut(s) 359
Bsp1286I GDGCHC 2 cut(s) 149, 241
Bsp143I GATC 2 cut(s) 211, 338
BspANI GGCC 1 cut(s) 359
BspCNI CTCAG 1 cut(s) 241
BspLI GGNNCC 4 cut(s) 221, 267, 293, 301
BspPI GGATC 1 cut(s) 346
BspT107I GGYRCC 1 cut(s) 265
BsrFI RCCGGY 1 cut(s) 359
BssAI RCCGGY 1 cut(s) 359
BssECI CCNNGG 2 cut(s) 295, 303
BssMI GATC 2 cut(s) 211, 338
BssNI GRCGYC 1 cut(s) 332
BssSI CACGAG 1 cut(s) 240
BssT1I CCWWGG 1 cut(s) 295
Bst2BI CACGAG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 3 cut(s) 106, 176, 381
BstACI GRCGYC 1 cut(s) 332
BstDEI CTNAG 4 cut(s) 167, 205, 249, 351
BstKTI GATC 2 cut(s) 214, 341
BstMAI GTCTC 2 cut(s) 112, 141
BstMBI GATC 2 cut(s) 211, 338
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNI CCWGG 1 cut(s) 224
BstNSI RCATGY 1 cut(s) 68
BstSCI CCNGG 1 cut(s) 222
BstV2I GAAGAC 1 cut(s) 118
BsuRI GGCC 1 cut(s) 359
BtsIMutI CAGTG 1 cut(s) 102
CaiI CAGNNNCTG 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 359
Cfr13I GGNCC 2 cut(s) 73, 291
Csp6I GTAC 3 cut(s) 177, 227, 266
CviAII CATG 1 cut(s) 65
CviJI RGCY 5 cut(s) 222, 239, 248, 302, 359
CviKI_1 RGCY 5 cut(s) 222, 239, 248, 302, 359
CviQI GTAC 3 cut(s) 177, 227, 266
DdeI CTNAG 4 cut(s) 167, 205, 249, 351
DpnI GATC 2 cut(s) 213, 340
DpnII GATC 2 cut(s) 211, 338
DraIII CACNNNGTG 1 cut(s) 41
EaeI YGGCCR 1 cut(s) 357
Ecl136II GAGCTC 1 cut(s) 239
Eco130I CCWWGG 1 cut(s) 295
Eco24I GRGCYC 1 cut(s) 241
Eco47I GGWCC 2 cut(s) 73, 291
Eco53kI GAGCTC 1 cut(s) 239
EcoICRI GAGCTC 1 cut(s) 239
EcoO109I RGGNCCY 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 222
EcoT14I CCWWGG 1 cut(s) 295
EcoT38I GRGCYC 1 cut(s) 241
ErhI CCWWGG 1 cut(s) 295
FaeI CATG 1 cut(s) 68
FaiI YATR 1 cut(s) 66
FaqI GGGAC 1 cut(s) 277
FatI CATG 1 cut(s) 64
FriOI GRGCYC 1 cut(s) 241
FspBI CTAG 2 cut(s) 21, 260
HaeIII GGCC 1 cut(s) 359
HapII CCGG 1 cut(s) 360
Hin1I GRCGYC 1 cut(s) 332
Hin1II CATG 1 cut(s) 68
HinfI GANTC 1 cut(s) 256
HpaII CCGG 1 cut(s) 360
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 307
Hpy188III TCNNGA 2 cut(s) 242, 336
Hpy8I GTNNAC 1 cut(s) 229
Hpy99I CGWCG 1 cut(s) 337
HpyAV CCTTC 2 cut(s) 129, 169
HpyCH4III ACNGT 3 cut(s) 106, 176, 381
HpyCH4IV ACGT 2 cut(s) 37, 332
HpyCH4V TGCA 1 cut(s) 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 4 cut(s) 167, 205, 249, 351
HpySE526I ACGT 2 cut(s) 37, 332
Hsp92I GRCGYC 1 cut(s) 332
Hsp92II CATG 1 cut(s) 68
KpnI GGTACC 1 cut(s) 269
Kzo9I GATC 2 cut(s) 211, 338
LmnI GCTCC 2 cut(s) 219, 299
LpnPI CCDG 4 cut(s) 209, 236, 358, 373
MaeI CTAG 2 cut(s) 21, 260
MaeII ACGT 2 cut(s) 37, 332
MaeIII GTNAC 2 cut(s) 5, 33
MalI GATC 2 cut(s) 213, 340
MboI GATC 2 cut(s) 211, 338
MboII GAAGA 2 cut(s) 118, 154
MhlI GDGCHC 2 cut(s) 149, 241
MluCI AATT 2 cut(s) 325, 372
MlyI GAGTC 1 cut(s) 265
MmeI TCCRAC 2 cut(s) 51, 298
MnlI CCTC 6 cut(s) 165, 207, 209, 246, 282, 313
MspI CCGG 1 cut(s) 360
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 245
NdeII GATC 2 cut(s) 211, 338
NlaIII CATG 1 cut(s) 68
NlaIV GGNNCC 4 cut(s) 221, 267, 293, 301
NmuCI GTSAC 1 cut(s) 33
NspI RCATGY 1 cut(s) 68
PcsI WCGNNNNNNNCGW 1 cut(s) 338
PflFI GACNNNGTC 1 cut(s) 104
PleI GAGTC 1 cut(s) 264
PpsI GAGTC 1 cut(s) 264
PpuMI RGGWCCY 1 cut(s) 291
Psp124BI GAGCTC 1 cut(s) 241
Psp5II RGGWCCY 1 cut(s) 291
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 4 cut(s) 221, 267, 293, 301
PspPI GGNCC 2 cut(s) 73, 291
PspPPI RGGWCCY 1 cut(s) 291
PstNI CAGNNNCTG 1 cut(s) 104
PsyI GACNNNGTC 1 cut(s) 104
RsaI GTAC 3 cut(s) 178, 228, 267
RsaNI GTAC 3 cut(s) 177, 227, 266
SacI GAGCTC 1 cut(s) 241
Sau3AI GATC 2 cut(s) 211, 338
Sau96I GGNCC 2 cut(s) 73, 291
SchI GAGTC 1 cut(s) 265
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 2 cut(s) 149, 241
SetI ASST 7 cut(s) 12, 40, 228, 241, 250, 293, 335
SinI GGWCC 2 cut(s) 73, 291
Sse9I AATT 2 cut(s) 325, 372
SspMI CTAG 2 cut(s) 21, 260
SstI GAGCTC 1 cut(s) 241
StyD4I CCNGG 1 cut(s) 222
StyI CCWWGG 1 cut(s) 295
TaaI ACNGT 3 cut(s) 106, 176, 381
TaiI ACGT 2 cut(s) 40, 335
TaqI TCGA 2 cut(s) 214, 235
TasI AATT 2 cut(s) 325, 372
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 33
Tsp45I GTSAC 1 cut(s) 33
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 1 cut(s) 109
Tth111I GACNNNGTC 1 cut(s) 104
VpaK11BI GGWCC 2 cut(s) 73, 291
XceI RCATGY 1 cut(s) 68
XspI CTAG 2 cut(s) 21, 260
ZraI GACGTC 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.