pycom13g05260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000513
Physical Location & Seq
Forward (+)
3494811 .. 3496068
1258 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g05260.4

Sequence Viewer

Length: 486 bp
ATGTTCGTGTCGTTTTCGTGTCATACTCGTTATTTGAACAAGTCGTATTGGGTCAAACCTAATATCTTAACGGTTTATCAGTTCGTTTTTGTCACGTTATGGGTTGTTTTGTGTGGTGTGGCATGTGTTGGACCACACACACACTCCCACACACAGACACTGTCCCTCTCTCTCTCTCCTTCTGTCTTCTCTCTGTCTCTCCCGTGCTCCCTTCCTCCCTTCTCCATTGAAACTGTACGGACAAACCCCAAAACCCCTCAAACCTTAGCAGATCGAGGGAACCAAGTACACCATCAAGCTCGTGAGGCTGAGAGGAGTCTAGTGGTACCATTTCCAGCTTGTAGATGTGTTGGTGAGGTCCCAAGGAGCTTGGGAGTGCATCGTTGGACGGATTTGGACGTCGGAACCAAGAACTGTGACACATACCCCGAGGACGAGCGTGCACACGCGAGGCAGGGGGGCTACGACCCTTCTACATATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.08

Weight (kDa)

8.2

Isoelectric Point (pI)

45.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 402
Acc65I GGTACC 1 cut(s) 325
AccB1I GGYRCC 1 cut(s) 325
AccII CGCG 1 cut(s) 449
AcyI GRCGYC 1 cut(s) 399
AfaI GTAC 3 cut(s) 237, 288, 327
AgsI TTSAA 2 cut(s) 37, 230
AluBI AGCT 3 cut(s) 299, 338, 369
AluI AGCT 3 cut(s) 299, 338, 369
Alw21I GWGCWC 2 cut(s) 209, 445
Alw26I GTCTC 1 cut(s) 201
Alw44I GTGCAC 1 cut(s) 441
AlwNI CAGNNNCTG 1 cut(s) 160
Ama87I CYCGRG 1 cut(s) 428
ApaLI GTGCAC 1 cut(s) 441
Asp718I GGTACC 1 cut(s) 325
AspS9I GGNCC 2 cut(s) 131, 358
AsuHPI GGTGA 1 cut(s) 365
AvaI CYCGRG 1 cut(s) 428
AvaII GGWCC 2 cut(s) 131, 358
BaeGI GKGCMC 1 cut(s) 445
BanI GGYRCC 1 cut(s) 325
BauI CACGAG 1 cut(s) 300
BbsI GAAGAC 1 cut(s) 178
Bbv12I GWGCWC 2 cut(s) 209, 445
BccI CCATC 1 cut(s) 300
BcoDI GTCTC 1 cut(s) 201
BfaI CTAG 1 cut(s) 320
Bme18I GGWCC 2 cut(s) 131, 358
BmeT110I CYCGRG 1 cut(s) 428
BmgT120I GGNCC 2 cut(s) 131, 358
BmiI GGNNCC 4 cut(s) 281, 327, 360, 406
BmsI GCATC 1 cut(s) 388
BpiI GAAGAC 1 cut(s) 178
Bpu10I CCTNAGC 1 cut(s) 265
BsaHI GRCGYC 1 cut(s) 399
BsaJI CCNNGG 2 cut(s) 362, 429
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
BseDI CCNNGG 2 cut(s) 362, 429
BseMII CTCAG 1 cut(s) 300
BseRI GAGGAG 1 cut(s) 328
BseSI GKGCMC 1 cut(s) 445
Bsh1236I CGCG 1 cut(s) 449
BshNI GGYRCC 1 cut(s) 325
BsiHKAI GWGCWC 2 cut(s) 209, 445
BsiHKCI CYCGRG 1 cut(s) 428
BslFI GGGAC 2 cut(s) 148, 344
BsmAI GTCTC 1 cut(s) 201
BsmFI GGGAC 2 cut(s) 148, 344
BsoBI CYCGRG 1 cut(s) 428
Bsp1286I GDGCHC 2 cut(s) 209, 445
Bsp143I GATC 1 cut(s) 271
BspCNI CTCAG 1 cut(s) 301
BspFNI CGCG 1 cut(s) 449
BspLI GGNNCC 4 cut(s) 281, 327, 360, 406
BspT107I GGYRCC 1 cut(s) 325
BssECI CCNNGG 2 cut(s) 362, 429
BssMI GATC 1 cut(s) 271
BssNI GRCGYC 1 cut(s) 399
BssSI CACGAG 1 cut(s) 300
BssT1I CCWWGG 1 cut(s) 362
Bst2BI CACGAG 1 cut(s) 300
Bst4CI ACNGT 4 cut(s) 73, 162, 235, 416
BstACI GRCGYC 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 441
BstDEI CTNAG 2 cut(s) 265, 309
BstFNI CGCG 1 cut(s) 449
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 201
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNSI RCATGY 1 cut(s) 126
BstSLI GKGCMC 1 cut(s) 445
BstUI CGCG 1 cut(s) 449
BstV2I GAAGAC 1 cut(s) 178
BtsIMutI CAGTG 1 cut(s) 158
Cac8I GCNNGC 1 cut(s) 441
CaiI CAGNNNCTG 1 cut(s) 160
Cfr13I GGNCC 2 cut(s) 131, 358
Csp6I GTAC 3 cut(s) 236, 287, 326
CviAII CATG 1 cut(s) 123
CviJI RGCY 5 cut(s) 299, 308, 338, 369, 462
CviKI_1 RGCY 5 cut(s) 299, 308, 338, 369, 462
CviQI GTAC 3 cut(s) 236, 287, 326
DdeI CTNAG 2 cut(s) 265, 309
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
Eco130I CCWWGG 1 cut(s) 362
Eco47I GGWCC 2 cut(s) 131, 358
Eco88I CYCGRG 1 cut(s) 428
EcoO109I RGGNCCY 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 362
ErhI CCWWGG 1 cut(s) 362
FaeI CATG 1 cut(s) 126
FaiI YATR 5 cut(s) 24, 100, 124, 424, 478
FaqI GGGAC 2 cut(s) 148, 344
FatI CATG 1 cut(s) 122
FspBI CTAG 1 cut(s) 320
Hin1I GRCGYC 1 cut(s) 399
Hin1II CATG 1 cut(s) 126
HinfI GANTC 1 cut(s) 316
HphI GGTGA 1 cut(s) 365
Hpy166II GTNNAC 2 cut(s) 289, 443
Hpy188I TCNGA 1 cut(s) 404
Hpy188III TCNNGA 1 cut(s) 302
Hpy8I GTNNAC 2 cut(s) 289, 443
Hpy99I CGWCG 1 cut(s) 404
HpyAV CCTTC 4 cut(s) 189, 221, 229, 480
HpyCH4III ACNGT 4 cut(s) 73, 162, 235, 416
HpyCH4IV ACGT 2 cut(s) 95, 399
HpyCH4V TGCA 2 cut(s) 379, 443
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 2 cut(s) 265, 309
HpySE526I ACGT 2 cut(s) 95, 399
Hsp92I GRCGYC 1 cut(s) 399
Hsp92II CATG 1 cut(s) 126
KpnI GGTACC 1 cut(s) 329
Kzo9I GATC 1 cut(s) 271
LmnI GCTCC 2 cut(s) 212, 366
LpnPI CCDG 2 cut(s) 348, 440
LweI GCATC 1 cut(s) 388
MaeI CTAG 1 cut(s) 320
MaeII ACGT 2 cut(s) 95, 399
MaeIII GTNAC 2 cut(s) 91, 416
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MboII GAAGA 1 cut(s) 178
MhlI GDGCHC 2 cut(s) 209, 445
MlyI GAGTC 1 cut(s) 325
MmeI TCCRAC 3 cut(s) 109, 365, 382
MnlI CCTC 9 cut(s) 176, 225, 267, 269, 298, 306, 349, 424, 444
MseI TTAA 1 cut(s) 68
MslI CAYNNNNRTG 1 cut(s) 481
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeII GATC 1 cut(s) 271
NlaIII CATG 1 cut(s) 126
NlaIV GGNNCC 4 cut(s) 281, 327, 360, 406
NmuCI GTSAC 2 cut(s) 91, 416
NspI RCATGY 1 cut(s) 126
PflFI GACNNNGTC 1 cut(s) 160
PleI GAGTC 1 cut(s) 324
PpsI GAGTC 1 cut(s) 324
PpuMI RGGWCCY 1 cut(s) 358
Psp5II RGGWCCY 1 cut(s) 358
PspN4I GGNNCC 4 cut(s) 281, 327, 360, 406
PspPI GGNCC 2 cut(s) 131, 358
PspPPI RGGWCCY 1 cut(s) 358
PstNI CAGNNNCTG 1 cut(s) 160
PsyI GACNNNGTC 1 cut(s) 160
RsaI GTAC 3 cut(s) 237, 288, 327
RsaNI GTAC 3 cut(s) 236, 287, 326
RseI CAYNNNNRTG 1 cut(s) 481
SaqAI TTAA 1 cut(s) 68
Sau3AI GATC 1 cut(s) 271
Sau96I GGNCC 2 cut(s) 131, 358
SchI GAGTC 1 cut(s) 325
SduI GDGCHC 2 cut(s) 209, 445
SetI ASST 8 cut(s) 61, 98, 266, 301, 340, 360, 371, 402
SfaNI GCATC 1 cut(s) 388
SinI GGWCC 2 cut(s) 131, 358
SmiMI CAYNNNNRTG 1 cut(s) 481
SspMI CTAG 1 cut(s) 320
StyI CCWWGG 1 cut(s) 362
TaaI ACNGT 4 cut(s) 73, 162, 235, 416
TaiI ACGT 2 cut(s) 98, 402
TaqI TCGA 1 cut(s) 274
TatI WGTACW 1 cut(s) 286
Tru1I TTAA 1 cut(s) 68
Tru9I TTAA 1 cut(s) 68
TscAI CASTG 1 cut(s) 165
TseFI GTSAC 2 cut(s) 91, 416
Tsp45I GTSAC 2 cut(s) 91, 416
TspGWI ACGGA 2 cut(s) 253, 404
TspRI CASTG 1 cut(s) 165
Tth111I GACNNNGTC 1 cut(s) 160
VneI GTGCAC 1 cut(s) 441
VpaK11BI GGWCC 2 cut(s) 131, 358
XceI RCATGY 1 cut(s) 126
XspI CTAG 1 cut(s) 320
ZraI GACGTC 1 cut(s) 400
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.