pycom15g32660

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
31767220 .. 31768105
886 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g32660.3

Sequence Viewer

Length: 315 bp
ATGCTCCTATCACGGACATACACCCAAACCCATCAAACCTCCACAGATCGAAGAAACCAAGCACATATTCATGCTCGTGAGGTTCGTAGGAGTCCAACCATACCTATTTCAGTTCAAGCTTGTAGGAAGCTTGGTGAGGTTCCTAGGAGGCTCGGGGTGGTTCGTTTGAAGGTTTTGGACGTCGCGATCATGAGTTTCGAGGTTGGCCGGAGTTGGGATGATTTTCCAGTTGTTTCGCATATAGGTGAATCCTATCCCGAGGACGAGCGTGGTCACTCGAGGCAGGGGGGTTACGACCCTTCCACTTATCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

105

Amino Acids

11.92

Weight (kDa)

9.42

Isoelectric Point (pI)

69.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 183
AccII CGCG 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 205
AcyI GRCGYC 1 cut(s) 180
AfiI CCNNNNNNNGG 1 cut(s) 214
AgsI TTSAA 2 cut(s) 116, 169
AjuI GAANNNNNNNTTGG 2 cut(s) 51, 83
AluBI AGCT 2 cut(s) 119, 130
AluI AGCT 2 cut(s) 119, 130
Ama87I CYCGRG 3 cut(s) 152, 257, 277
AoxI GGCC 1 cut(s) 205
AspA2I CCTAGG 1 cut(s) 143
AsuHPI GGTGA 2 cut(s) 146, 257
AvaI CYCGRG 3 cut(s) 152, 257, 277
AvrII CCTAGG 1 cut(s) 143
BauI CACGAG 1 cut(s) 75
BccI CCATC 1 cut(s) 39
BfaI CTAG 1 cut(s) 144
BlnI CCTAGG 1 cut(s) 143
BmeT110I CYCGRG 3 cut(s) 152, 257, 277
BmiI GGNNCC 1 cut(s) 141
BsaHI GRCGYC 1 cut(s) 180
BsaJI CCNNGG 2 cut(s) 143, 258
Bsc4I CCNNNNNNNGG 1 cut(s) 214
Bse1I ACTGG 1 cut(s) 227
BseDI CCNNGG 2 cut(s) 143, 258
BseGI GGATG 1 cut(s) 223
BseLI CCNNNNNNNGG 1 cut(s) 214
BseNI ACTGG 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 185
BshFI GGCC 1 cut(s) 207
BsiHKCI CYCGRG 3 cut(s) 152, 257, 277
BsiSI CCGG 1 cut(s) 208
BslI CCNNNNNNNGG 1 cut(s) 214
BsnI GGCC 1 cut(s) 207
BsoBI CYCGRG 3 cut(s) 152, 257, 277
Bsp143I GATC 2 cut(s) 46, 186
Bsp68I TCGCGA 1 cut(s) 185
BspANI GGCC 1 cut(s) 207
BspFNI CGCG 1 cut(s) 185
BspHI TCATGA 1 cut(s) 189
BspLI GGNNCC 1 cut(s) 141
BsrI ACTGG 1 cut(s) 227
BssECI CCNNGG 2 cut(s) 143, 258
BssMI GATC 2 cut(s) 46, 186
BssNI GRCGYC 1 cut(s) 180
BssSI CACGAG 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 143
Bst2BI CACGAG 1 cut(s) 75
BstACI GRCGYC 1 cut(s) 180
BstF5I GGATG 1 cut(s) 223
BstFNI CGCG 1 cut(s) 185
BstKTI GATC 2 cut(s) 49, 189
BstMBI GATC 2 cut(s) 46, 186
BstUI CGCG 1 cut(s) 185
BsuRI GGCC 1 cut(s) 207
BtsCI GGATG 1 cut(s) 223
BtuMI TCGCGA 1 cut(s) 185
CciI TCATGA 1 cut(s) 189
CviAII CATG 2 cut(s) 71, 190
CviJI RGCY 4 cut(s) 119, 130, 151, 207
CviKI_1 RGCY 4 cut(s) 119, 130, 151, 207
DpnI GATC 2 cut(s) 48, 188
DpnII GATC 2 cut(s) 46, 186
EaeI YGGCCR 1 cut(s) 205
Eco130I CCWWGG 1 cut(s) 143
Eco88I CYCGRG 3 cut(s) 152, 257, 277
EcoT14I CCWWGG 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 2 cut(s) 74, 193
FaiI YATR 7 cut(s) 19, 66, 72, 101, 191, 240, 242
FatI CATG 2 cut(s) 70, 189
FokI GGATG 1 cut(s) 230
FspBI CTAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 207
HapII CCGG 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 180
Hin1II CATG 2 cut(s) 74, 193
HindIII AAGCTT 2 cut(s) 117, 128
HinfI GANTC 2 cut(s) 91, 248
HpaII CCGG 1 cut(s) 208
HphI GGTGA 2 cut(s) 146, 257
Hpy188III TCNNGA 4 cut(s) 77, 184, 190, 257
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 2 cut(s) 163, 309
HpyCH4IV ACGT 1 cut(s) 180
HpySE526I ACGT 1 cut(s) 180
Hsp92I GRCGYC 1 cut(s) 180
Hsp92II CATG 2 cut(s) 74, 193
Kzo9I GATC 2 cut(s) 46, 186
LmnI GCTCC 1 cut(s) 9
LpnPI CCDG 3 cut(s) 221, 240, 269
MaeI CTAG 1 cut(s) 144
MaeII ACGT 1 cut(s) 180
MaeIII GTNAC 2 cut(s) 272, 290
MalI GATC 2 cut(s) 48, 188
MboI GATC 2 cut(s) 46, 186
MboII GAAGA 1 cut(s) 63
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 119
MnlI CCTC 7 cut(s) 49, 73, 130, 141, 193, 253, 273
MslI CAYNNNNRTG 3 cut(s) 69, 75, 243
MspI CCGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 185
NdeII GATC 2 cut(s) 46, 186
NlaIII CATG 2 cut(s) 74, 193
NlaIV GGNNCC 1 cut(s) 141
NmuCI GTSAC 1 cut(s) 272
NruI TCGCGA 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 277
PagI TCATGA 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PfeI GAWTC 1 cut(s) 248
PleI GAGTC 1 cut(s) 99
PpsI GAGTC 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 141
PspXI VCTCGAGB 1 cut(s) 277
RruI TCGCGA 1 cut(s) 185
RseI CAYNNNNRTG 3 cut(s) 69, 75, 243
Sau3AI GATC 2 cut(s) 46, 186
SchI GAGTC 1 cut(s) 100
Sfr274I CTCGAG 1 cut(s) 277
SlaI CTCGAG 1 cut(s) 277
SmiMI CAYNNNNRTG 3 cut(s) 69, 75, 243
SmlI CTYRAG 1 cut(s) 277
SmoI CTYRAG 1 cut(s) 277
SspMI CTAG 1 cut(s) 144
StyI CCWWGG 1 cut(s) 143
TaiI ACGT 1 cut(s) 183
TaqI TCGA 3 cut(s) 49, 198, 278
TfiI GAWTC 1 cut(s) 248
TseFI GTSAC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 272
TspDTI ATGAA 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 28
XhoI CTCGAG 1 cut(s) 277
XmaJI CCTAGG 1 cut(s) 143
XspI CTAG 1 cut(s) 144
ZraI GACGTC 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.