pycom12g07880
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0000513
Physical Location & Seq
Forward (+)
8552878 .. 8554556
1679 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g07880.3

Sequence Viewer

Length: 297 bp
ATGCACACGTTAATTCTTATGAGGCTCAGGGTGGTTCGTTTAAAGGTTTTGGACGTCGGGATCGTGAGTTGCAGGTTTGGCCGGAGTTGGTGGTGTTTTCCCGGCGAGATTCCGTTGGTTTTAGTGCTTGAAAGTGTTGTTTCGCATATAGGTGAGACCTATCCCGAGGACGAGCGCGGTCACTCGAGGCAAGGGGGTTACGACCCTTCTACATACCAGCTCCCGCCCAGAGTTGGGCACAGTCCTTTACGTGATGTTCACCTCCCGCACCACATGCTTATCTTGGATCCAAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

99

Amino Acids

11.2

Weight (kDa)

7.06

Isoelectric Point (pI)

57.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 57
Acc36I ACCTGC 1 cut(s) 63
AccII CGCG 1 cut(s) 177
AciI CCGC 3 cut(s) 177, 224, 266
AclWI GGATC 3 cut(s) 68, 281, 294
AcoI YGGCCR 1 cut(s) 79
AcyI GRCGYC 1 cut(s) 54
AfiI CCNNNNNNNGG 2 cut(s) 233, 234
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 1 cut(s) 131
AluBI AGCT 1 cut(s) 220
AluI AGCT 1 cut(s) 220
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 3 cut(s) 68, 281, 294
Ama87I CYCGRG 2 cut(s) 164, 184
AoxI GGCC 1 cut(s) 79
AspLEI GCGC 1 cut(s) 177
AsuC2I CCSGG 1 cut(s) 102
AsuHPI GGTGA 2 cut(s) 164, 251
AvaI CYCGRG 2 cut(s) 164, 184
BaeGI GKGCMC 1 cut(s) 240
BamHI GGATCC 1 cut(s) 286
BcnI CCSGG 1 cut(s) 102
BcoDI GTCTC 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 63
Bme1390I CCNGG 1 cut(s) 102
BmeT110I CYCGRG 2 cut(s) 164, 184
BmiI GGNNCC 1 cut(s) 288
BmrFI CCNGG 1 cut(s) 102
Bpu10I CCTNAGC 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 102
BsaAI YACGTR 1 cut(s) 251
BsaHI GRCGYC 1 cut(s) 54
BsaI GGTCTC 1 cut(s) 149
BsaJI CCNNGG 1 cut(s) 165
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 234
BseDI CCNNGG 1 cut(s) 165
BseLI CCNNNNNNNGG 2 cut(s) 233, 234
BseMII CTCAG 1 cut(s) 40
BseSI GKGCMC 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 177
BshFI GGCC 1 cut(s) 81
BsiHKCI CYCGRG 2 cut(s) 164, 184
BsiSI CCGG 2 cut(s) 82, 102
BslI CCNNNNNNNGG 2 cut(s) 233, 234
BsmAI GTCTC 1 cut(s) 149
BsnI GGCC 1 cut(s) 81
Bso31I GGTCTC 1 cut(s) 149
BsoBI CYCGRG 2 cut(s) 164, 184
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 2 cut(s) 60, 286
BspACI CCGC 3 cut(s) 177, 224, 266
BspANI GGCC 1 cut(s) 81
BspCNI CTCAG 1 cut(s) 39
BspFNI CGCG 1 cut(s) 177
BspLI GGNNCC 1 cut(s) 288
BspMI ACCTGC 1 cut(s) 63
BspPI GGATC 3 cut(s) 68, 281, 294
BspTNI GGTCTC 1 cut(s) 149
BssECI CCNNGG 1 cut(s) 165
BssMI GATC 2 cut(s) 60, 286
BssNI GRCGYC 1 cut(s) 54
Bst4CI ACNGT 1 cut(s) 242
BstACI GRCGYC 1 cut(s) 54
BstAPI GCANNNNNTGC 1 cut(s) 274
BstBAI YACGTR 1 cut(s) 251
BstDEI CTNAG 1 cut(s) 26
BstFNI CGCG 1 cut(s) 177
BstHHI GCGC 1 cut(s) 177
BstKTI GATC 2 cut(s) 63, 289
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 2 cut(s) 60, 286
BstMWI GCNNNNNNNGC 2 cut(s) 78, 274
BstNSI RCATGY 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 100
BstSLI GKGCMC 1 cut(s) 240
BstUI CGCG 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 286
BstYI RGATCY 1 cut(s) 286
BsuRI GGCC 1 cut(s) 81
BveI ACCTGC 1 cut(s) 63
CfoI GCGC 1 cut(s) 177
CviAII CATG 1 cut(s) 274
CviJI RGCY 3 cut(s) 25, 81, 220
CviKI_1 RGCY 3 cut(s) 25, 81, 220
DdeI CTNAG 1 cut(s) 26
DpnI GATC 2 cut(s) 62, 288
DpnII GATC 2 cut(s) 60, 286
DraI TTTAAA 1 cut(s) 42
EaeI YGGCCR 1 cut(s) 79
Eco31I GGTCTC 1 cut(s) 149
Eco88I CYCGRG 2 cut(s) 164, 184
FaeI CATG 1 cut(s) 277
FaiI YATR 5 cut(s) 20, 147, 149, 214, 275
FatI CATG 1 cut(s) 273
FauI CCCGC 2 cut(s) 231, 273
GlaI GCGC 1 cut(s) 176
HaeIII GGCC 1 cut(s) 81
HapII CCGG 2 cut(s) 82, 102
HhaI GCGC 1 cut(s) 177
Hin1I GRCGYC 1 cut(s) 54
Hin1II CATG 1 cut(s) 277
Hin6I GCGC 1 cut(s) 175
HinP1I GCGC 1 cut(s) 175
HinfI GANTC 1 cut(s) 109
HpaII CCGG 2 cut(s) 82, 102
HphI GGTGA 2 cut(s) 164, 251
Hpy166II GTNNAC 1 cut(s) 259
Hpy188III TCNNGA 3 cut(s) 58, 64, 164
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 59
HpyAV CCTTC 1 cut(s) 216
HpyCH4III ACNGT 1 cut(s) 242
HpyCH4IV ACGT 3 cut(s) 8, 54, 250
HpyCH4V TGCA 2 cut(s) 4, 72
HpyF10VI GCNNNNNNNGC 2 cut(s) 78, 274
HpyF3I CTNAG 1 cut(s) 26
HpySE526I ACGT 3 cut(s) 8, 54, 250
Hsp92I GRCGYC 1 cut(s) 54
Hsp92II CATG 1 cut(s) 277
HspAI GCGC 1 cut(s) 175
Kzo9I GATC 2 cut(s) 60, 286
LmnI GCTCC 1 cut(s) 225
LpnPI CCDG 6 cut(s) 13, 58, 95, 115, 230, 241
MaeII ACGT 3 cut(s) 8, 54, 250
MaeIII GTNAC 2 cut(s) 179, 197
MalI GATC 2 cut(s) 62, 288
MboI GATC 2 cut(s) 60, 286
MflI RGATCY 1 cut(s) 286
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 1 cut(s) 12
MnlI CCTC 4 cut(s) 15, 160, 180, 272
MseI TTAA 2 cut(s) 11, 41
MslI CAYNNNNRTG 1 cut(s) 150
MspI CCGG 2 cut(s) 82, 102
MspR9I CCNGG 1 cut(s) 102
MvnI CGCG 1 cut(s) 177
MwoI GCNNNNNNNGC 2 cut(s) 78, 274
NciI CCSGG 1 cut(s) 102
NdeII GATC 2 cut(s) 60, 286
NlaIII CATG 1 cut(s) 277
NlaIV GGNNCC 1 cut(s) 288
NmuCI GTSAC 1 cut(s) 179
NspI RCATGY 1 cut(s) 277
PaeR7I CTCGAG 1 cut(s) 184
PcsI WCGNNNNNNNCGW 1 cut(s) 60
PfeI GAWTC 1 cut(s) 109
Ppu21I YACGTR 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 288
PspXI VCTCGAGB 1 cut(s) 184
PsuI RGATCY 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 2 cut(s) 11, 41
Sau3AI GATC 2 cut(s) 60, 286
ScrFI CCNGG 1 cut(s) 102
SduI GDGCHC 1 cut(s) 240
SetI ASST 9 cut(s) 11, 48, 57, 77, 154, 161, 222, 253, 264
Sfr274I CTCGAG 1 cut(s) 184
SlaI CTCGAG 1 cut(s) 184
SmiMI CAYNNNNRTG 1 cut(s) 150
SmlI CTYRAG 1 cut(s) 184
SmoI CTYRAG 1 cut(s) 184
Sse9I AATT 1 cut(s) 12
SsiI CCGC 3 cut(s) 177, 224, 266
StyD4I CCNGG 1 cut(s) 100
TaaI ACNGT 1 cut(s) 242
TaiI ACGT 3 cut(s) 11, 57, 253
TaqI TCGA 1 cut(s) 185
TasI AATT 1 cut(s) 12
TfiI GAWTC 1 cut(s) 109
Tru1I TTAA 2 cut(s) 11, 41
Tru9I TTAA 2 cut(s) 11, 41
TseFI GTSAC 1 cut(s) 179
Tsp45I GTSAC 1 cut(s) 179
TspGWI ACGGA 1 cut(s) 102
XceI RCATGY 1 cut(s) 277
XhoI CTCGAG 1 cut(s) 184
ZraI GACGTC 1 cut(s) 55
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.