pycom11g13260
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0000513
Physical Location & Seq
Forward (+)
12424566 .. 12425572
1007 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g13260.4

Sequence Viewer

Length: 261 bp
ATGCACACGTTAATTCTTGTCCTTAGGAGGCTCGGGGTGGTTCGTTTGAAGGTTTTGGATGTCGGGATCGTGAGTTGCAGGTTTGGCCGGAGTTGGTGGTGTTTTCCCGGCGAGATTCTGTGGGTTTTAGTGCTTGAAAGTGTTGTTTCGCATATAGGTGAGACCTATCCCGAGGACGAGCGCGGTCACTCGAGGCAAGGGGGTTACGACCCTTCTACATATCATGCTCCCGCCCAGAGTTGGGCACAGTCCTTCACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

87

Amino Acids

9.8

Weight (kDa)

6.89

Isoelectric Point (pI)

73.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 69
AccII CGCG 1 cut(s) 183
AciI CCGC 2 cut(s) 183, 231
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 85
AcvI CACGTG 1 cut(s) 258
AfiI CCNNNNNNNGG 2 cut(s) 240, 241
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 2 cut(s) 49, 137
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 74
Ama87I CYCGRG 3 cut(s) 32, 170, 190
AoxI GGCC 1 cut(s) 85
AspLEI GCGC 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 170
AvaI CYCGRG 3 cut(s) 32, 170, 190
AxyI CCTNAGG 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 247
BbrPI CACGTG 1 cut(s) 258
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 155
BfuAI ACCTGC 1 cut(s) 69
Bme1390I CCNGG 1 cut(s) 108
BmeT110I CYCGRG 3 cut(s) 32, 170, 190
BmrFI CCNGG 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 108
BsaAI YACGTR 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 1 cut(s) 171
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 241
Bse21I CCTNAGG 1 cut(s) 23
BseDI CCNNGG 1 cut(s) 171
BseGI GGATG 1 cut(s) 64
BseLI CCNNNNNNNGG 2 cut(s) 240, 241
BseSI GKGCMC 1 cut(s) 247
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 1 cut(s) 87
BsiHKCI CYCGRG 3 cut(s) 32, 170, 190
BsiSI CCGG 2 cut(s) 88, 108
BslI CCNNNNNNNGG 2 cut(s) 240, 241
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 87
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 3 cut(s) 32, 170, 190
Bsp1286I GDGCHC 1 cut(s) 247
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 2 cut(s) 183, 231
BspANI GGCC 1 cut(s) 87
BspFNI CGCG 1 cut(s) 183
BspMI ACCTGC 1 cut(s) 69
BspPI GGATC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 155
BssECI CCNNGG 1 cut(s) 171
BssMI GATC 1 cut(s) 66
Bst4CI ACNGT 1 cut(s) 249
BstBAI YACGTR 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 23
BstF5I GGATG 1 cut(s) 64
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 247
BstUI CGCG 1 cut(s) 183
Bsu36I CCTNAGG 1 cut(s) 23
BsuRI GGCC 1 cut(s) 87
BtsCI GGATG 1 cut(s) 64
BveI ACCTGC 1 cut(s) 69
CfoI GCGC 1 cut(s) 183
CviAII CATG 1 cut(s) 224
CviJI RGCY 2 cut(s) 31, 87
CviKI_1 RGCY 2 cut(s) 31, 87
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 155
Eco72I CACGTG 1 cut(s) 258
Eco81I CCTNAGG 1 cut(s) 23
Eco88I CYCGRG 3 cut(s) 32, 170, 190
FaeI CATG 1 cut(s) 227
FaiI YATR 4 cut(s) 153, 155, 220, 225
FatI CATG 1 cut(s) 223
FauI CCCGC 1 cut(s) 238
FokI GGATG 1 cut(s) 71
GlaI GCGC 1 cut(s) 182
HaeIII GGCC 1 cut(s) 87
HapII CCGG 2 cut(s) 88, 108
HhaI GCGC 1 cut(s) 183
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HinfI GANTC 1 cut(s) 115
HpaII CCGG 2 cut(s) 88, 108
HphI GGTGA 1 cut(s) 170
Hpy188III TCNNGA 3 cut(s) 64, 70, 170
HpyAV CCTTC 2 cut(s) 43, 222
HpyCH4III ACNGT 1 cut(s) 249
HpyCH4IV ACGT 2 cut(s) 8, 257
HpyCH4V TGCA 2 cut(s) 4, 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 2 cut(s) 8, 257
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 4 cut(s) 64, 101, 121, 248
MaeII ACGT 2 cut(s) 8, 257
MaeIII GTNAC 2 cut(s) 185, 203
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MhlI GDGCHC 1 cut(s) 247
MluCI AATT 1 cut(s) 12
MnlI CCTC 3 cut(s) 21, 166, 186
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 2 cut(s) 88, 108
MspR9I CCNGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 84
NciI CCSGG 1 cut(s) 108
NdeII GATC 1 cut(s) 66
NlaIII CATG 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 190
PfeI GAWTC 1 cut(s) 115
PmaCI CACGTG 1 cut(s) 258
PmlI CACGTG 1 cut(s) 258
Ppu21I YACGTR 1 cut(s) 258
PspCI CACGTG 1 cut(s) 258
PspXI VCTCGAGB 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 1 cut(s) 11
Sau3AI GATC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 247
SetI ASST 6 cut(s) 11, 54, 83, 160, 167, 260
Sfr274I CTCGAG 1 cut(s) 190
SlaI CTCGAG 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 1 cut(s) 12
SsiI CCGC 2 cut(s) 183, 231
StyD4I CCNGG 1 cut(s) 106
TaaI ACNGT 1 cut(s) 249
TaiI ACGT 2 cut(s) 11, 260
TaqI TCGA 1 cut(s) 191
TasI AATT 1 cut(s) 12
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TseFI GTSAC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 185
XhoI CTCGAG 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.