pycom16g22580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000513
Physical Location & Seq
Reverse (-)
22632596 .. 22633546
951 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g22580.3

Sequence Viewer

Length: 372 bp
ATGTTTTGGGGTTTTTTTCCTGTATCTGTCCCGAGTTCCCATTCCCTTCCCATTTTCCTTGAAACGTACGGACACACCCACACACCCATCAAACCTTCAGATGATCGAAGAAACCAAGCACATATTCTAGCTCGTGAGGCTTGTAGGAGTCCAACCATACCCATTTCAGTTCAAGCTTGTAGGAAACTTGGTGAGGTCCTTAGGAGGCTCGGGGTGGTTCGTTTGAAGGTTTTGGACGTCGGGATCACGAGTTTCGAGGTTGGCCGGAGTTGGGGTGATTTTGCAGTTGTTTCGCATATAAGTGATACCTATCCCGAGGATGAGCGTGGTCACTCGAGGCAGGGGGGGTACGACCCTTCCACATACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.82

Weight (kDa)

7.88

Isoelectric Point (pI)

55.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 240
AclWI GGATC 1 cut(s) 251
AcoI YGGCCR 1 cut(s) 262
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 2 cut(s) 68, 350
AfiI CCNNNNNNNGG 1 cut(s) 271
AgsI TTSAA 3 cut(s) 62, 173, 226
AjuI GAANNNNNNNTTGG 2 cut(s) 108, 140
AluBI AGCT 2 cut(s) 131, 176
AluI AGCT 2 cut(s) 131, 176
AlwI GGATC 1 cut(s) 251
Ama87I CYCGRG 4 cut(s) 31, 209, 314, 334
AoxI GGCC 1 cut(s) 262
AspS9I GGNCC 1 cut(s) 196
AsuHPI GGTGA 2 cut(s) 203, 287
AvaI CYCGRG 4 cut(s) 31, 209, 314, 334
AvaII GGWCC 1 cut(s) 196
AxyI CCTNAGG 1 cut(s) 200
BauI CACGAG 2 cut(s) 132, 247
BccI CCATC 1 cut(s) 95
BcgI CGANNNNNNTGC 2 cut(s) 273, 307
BfaI CTAG 1 cut(s) 128
Bme18I GGWCC 1 cut(s) 196
BmeT110I CYCGRG 4 cut(s) 31, 209, 314, 334
BmgT120I GGNCC 1 cut(s) 196
BsaBI GATNNNNATC 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 237
BsaJI CCNNGG 1 cut(s) 315
BsaXI ACNNNNNCTCC 2 cut(s) 259, 289
Bsc4I CCNNNNNNNGG 1 cut(s) 271
Bse1I ACTGG 1 cut(s) 367
Bse21I CCTNAGG 1 cut(s) 200
Bse8I GATNNNNATC 1 cut(s) 309
BseDI CCNNGG 1 cut(s) 315
BseGI GGATG 1 cut(s) 325
BseJI GATNNNNATC 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 271
BseNI ACTGG 1 cut(s) 367
BshFI GGCC 1 cut(s) 264
BsiHKCI CYCGRG 4 cut(s) 31, 209, 314, 334
BsiSI CCGG 1 cut(s) 265
BsiWI CGTACG 1 cut(s) 66
BslFI GGGAC 1 cut(s) 14
BslI CCNNNNNNNGG 1 cut(s) 271
BsmFI GGGAC 1 cut(s) 14
BsnI GGCC 1 cut(s) 264
BsoBI CYCGRG 4 cut(s) 31, 209, 314, 334
Bsp143I GATC 2 cut(s) 103, 243
BspANI GGCC 1 cut(s) 264
BspPI GGATC 1 cut(s) 251
BsrI ACTGG 1 cut(s) 367
BssECI CCNNGG 1 cut(s) 315
BssMI GATC 2 cut(s) 103, 243
BssNI GRCGYC 1 cut(s) 237
BssSI CACGAG 2 cut(s) 132, 247
Bst2BI CACGAG 2 cut(s) 132, 247
BstACI GRCGYC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 200
BstF5I GGATG 1 cut(s) 325
BstKTI GATC 2 cut(s) 106, 246
BstMBI GATC 2 cut(s) 103, 243
BstMWI GCNNNNNNNGC 1 cut(s) 137
Bsu36I CCTNAGG 1 cut(s) 200
BsuRI GGCC 1 cut(s) 264
BtsCI GGATG 1 cut(s) 325
Cfr13I GGNCC 1 cut(s) 196
Csp6I GTAC 2 cut(s) 67, 349
CviJI RGCY 5 cut(s) 131, 140, 176, 208, 264
CviKI_1 RGCY 5 cut(s) 131, 140, 176, 208, 264
CviQI GTAC 2 cut(s) 67, 349
DdeI CTNAG 1 cut(s) 200
DpnI GATC 2 cut(s) 105, 245
DpnII GATC 2 cut(s) 103, 243
EaeI YGGCCR 1 cut(s) 262
Eco47I GGWCC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 81
Eco81I CCTNAGG 1 cut(s) 200
Eco88I CYCGRG 4 cut(s) 31, 209, 314, 334
EcoO109I RGGNCCY 1 cut(s) 196
FaiI YATR 5 cut(s) 123, 158, 297, 299, 364
FaqI GGGAC 1 cut(s) 14
FokI GGATG 1 cut(s) 332
FspBI CTAG 1 cut(s) 128
HaeIII GGCC 1 cut(s) 264
HapII CCGG 1 cut(s) 265
Hin1I GRCGYC 1 cut(s) 237
HindIII AAGCTT 1 cut(s) 174
HinfI GANTC 1 cut(s) 148
HpaII CCGG 1 cut(s) 265
HphI GGTGA 2 cut(s) 203, 287
Hpy188I TCNGA 1 cut(s) 100
Hpy188III TCNNGA 5 cut(s) 31, 134, 241, 247, 314
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 4 cut(s) 56, 105, 220, 366
HpyCH4IV ACGT 2 cut(s) 65, 237
HpyCH4V TGCA 1 cut(s) 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 137
HpyF3I CTNAG 1 cut(s) 200
HpySE526I ACGT 2 cut(s) 65, 237
Hsp92I GRCGYC 1 cut(s) 237
Kzo9I GATC 2 cut(s) 103, 243
LpnPI CCDG 3 cut(s) 33, 278, 326
MaeI CTAG 1 cut(s) 128
MaeII ACGT 2 cut(s) 65, 237
MaeIII GTNAC 1 cut(s) 329
MalI GATC 2 cut(s) 105, 245
MboI GATC 2 cut(s) 103, 243
MboII GAAGA 1 cut(s) 120
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 176
MnlI CCTC 6 cut(s) 130, 187, 198, 250, 310, 330
MslI CAYNNNNRTG 2 cut(s) 300, 367
MspI CCGG 1 cut(s) 265
MwoI GCNNNNNNNGC 1 cut(s) 137
NdeII GATC 2 cut(s) 103, 243
NmuCI GTSAC 1 cut(s) 329
PaeR7I CTCGAG 1 cut(s) 334
Pfl23II CGTACG 1 cut(s) 66
PleI GAGTC 1 cut(s) 156
PpsI GAGTC 1 cut(s) 156
PpuMI RGGWCCY 1 cut(s) 196
Psp5II RGGWCCY 1 cut(s) 196
PspLI CGTACG 1 cut(s) 66
PspPI GGNCC 1 cut(s) 196
PspPPI RGGWCCY 1 cut(s) 196
PspXI VCTCGAGB 1 cut(s) 334
RsaI GTAC 2 cut(s) 68, 350
RsaNI GTAC 2 cut(s) 67, 349
RseI CAYNNNNRTG 2 cut(s) 300, 367
Sau3AI GATC 2 cut(s) 103, 243
Sau96I GGNCC 1 cut(s) 196
SchI GAGTC 1 cut(s) 157
SetI ASST 9 cut(s) 68, 97, 133, 178, 198, 231, 240, 261, 311
Sfr274I CTCGAG 1 cut(s) 334
SinI GGWCC 1 cut(s) 196
SlaI CTCGAG 1 cut(s) 334
SmiMI CAYNNNNRTG 2 cut(s) 300, 367
SmlI CTYRAG 1 cut(s) 334
SmoI CTYRAG 1 cut(s) 334
SspMI CTAG 1 cut(s) 128
TaiI ACGT 2 cut(s) 68, 240
TaqI TCGA 3 cut(s) 106, 255, 335
TseFI GTSAC 1 cut(s) 329
Tsp45I GTSAC 1 cut(s) 329
TspGWI ACGGA 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 196
XhoI CTCGAG 1 cut(s) 334
XspI CTAG 1 cut(s) 128
ZraI GACGTC 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.