pycom03g02770

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000513
Physical Location & Seq
Reverse (-)
2133075 .. 2134841
1767 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g02770.4

Sequence Viewer

Length: 354 bp
ATGTTTTGGGCCACACACATTCTCCCACACTCCACACCCTTTTCTCCCTATTCCTGCACCCTGTCCCGACAAACCTCCACAGATTTAAGAAACCAAGCACATATTCATGCTCGTGAGGCTCGTAGGAGTCCAACCATACCTATTTCAGTTCAAGCTTGTAGGAAGCTTGGTGAGGTCCCTAGGAGGCTCGGGGTGGTTCGTTTGAAGGTTTTGGACGGCGGGATCACGAGTTTCGAGGTTGGCCGGAGTTGGGGTGATTTTTCAGTTGTTTCGCATATAGGTGATACCTATCCCGAGGACGAGCGTGGTCACTCGAGGCAGGGGGGCTACGACCCTTCCACATACCAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.17

Weight (kDa)

9.18

Isoelectric Point (pI)

69.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 219
AclWI GGATC 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 241
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 2 cut(s) 152, 205
AjuI GAANNNNNNNTTGG 2 cut(s) 87, 119
AluBI AGCT 2 cut(s) 155, 166
AluI AGCT 2 cut(s) 155, 166
AlwI GGATC 1 cut(s) 230
Ama87I CYCGRG 3 cut(s) 188, 293, 313
AoxI GGCC 2 cut(s) 9, 241
AspA2I CCTAGG 1 cut(s) 179
AspS9I GGNCC 2 cut(s) 9, 175
AsuHPI GGTGA 3 cut(s) 182, 266, 293
AvaI CYCGRG 3 cut(s) 188, 293, 313
AvaII GGWCC 1 cut(s) 175
AvrII CCTAGG 1 cut(s) 179
BauI CACGAG 2 cut(s) 111, 226
BceAI ACGGC 1 cut(s) 232
BfaI CTAG 2 cut(s) 180, 352
BlnI CCTAGG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 3 cut(s) 188, 293, 313
BmgT120I GGNCC 2 cut(s) 9, 175
BmiI GGNNCC 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 288
BsaJI CCNNGG 2 cut(s) 179, 294
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 238, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 346
Bse8I GATNNNNATC 1 cut(s) 288
BseDI CCNNGG 2 cut(s) 179, 294
BseJI GATNNNNATC 1 cut(s) 288
BseLI CCNNNNNNNGG 1 cut(s) 250
BseNI ACTGG 1 cut(s) 346
BsgI GTGCAG 1 cut(s) 40
BshFI GGCC 2 cut(s) 11, 243
BsiHKCI CYCGRG 3 cut(s) 188, 293, 313
BsiSI CCGG 1 cut(s) 244
BslFI GGGAC 2 cut(s) 49, 161
BslI CCNNNNNNNGG 1 cut(s) 250
BsmFI GGGAC 2 cut(s) 49, 161
BsnI GGCC 2 cut(s) 11, 243
BsoBI CYCGRG 3 cut(s) 188, 293, 313
Bsp143I GATC 1 cut(s) 222
BspACI CCGC 1 cut(s) 219
BspANI GGCC 2 cut(s) 11, 243
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 346
BssECI CCNNGG 2 cut(s) 179, 294
BssMI GATC 1 cut(s) 222
BssSI CACGAG 2 cut(s) 111, 226
BssT1I CCWWGG 1 cut(s) 179
Bst2BI CACGAG 2 cut(s) 111, 226
BstKTI GATC 1 cut(s) 225
BstMBI GATC 1 cut(s) 222
BstMWI GCNNNNNNNGC 1 cut(s) 116
BsuRI GGCC 2 cut(s) 11, 243
Cfr13I GGNCC 2 cut(s) 9, 175
CviAII CATG 1 cut(s) 107
CviJI RGCY 7 cut(s) 11, 119, 155, 166, 187, 243, 327
CviKI_1 RGCY 7 cut(s) 11, 119, 155, 166, 187, 243, 327
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
EaeI YGGCCR 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 175
Eco88I CYCGRG 3 cut(s) 188, 293, 313
EcoO109I RGGNCCY 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 1 cut(s) 110
FaiI YATR 6 cut(s) 102, 108, 137, 276, 278, 343
FaqI GGGAC 2 cut(s) 49, 161
FatI CATG 1 cut(s) 106
FauI CCCGC 1 cut(s) 212
FspBI CTAG 2 cut(s) 180, 352
HaeIII GGCC 2 cut(s) 11, 243
HapII CCGG 1 cut(s) 244
Hin1II CATG 1 cut(s) 110
HindIII AAGCTT 2 cut(s) 153, 164
HinfI GANTC 1 cut(s) 127
HpaII CCGG 1 cut(s) 244
HphI GGTGA 3 cut(s) 182, 266, 293
Hpy188III TCNNGA 4 cut(s) 66, 113, 226, 293
HpyAV CCTTC 2 cut(s) 199, 345
HpyCH4V TGCA 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
Hsp92II CATG 1 cut(s) 110
Kzo9I GATC 1 cut(s) 222
LpnPI CCDG 4 cut(s) 67, 74, 257, 305
MaeI CTAG 2 cut(s) 180, 352
MaeIII GTNAC 1 cut(s) 308
MalI GATC 1 cut(s) 224
MboI GATC 1 cut(s) 222
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 7 cut(s) 85, 109, 166, 177, 229, 289, 309
MseI TTAA 1 cut(s) 86
MslI CAYNNNNRTG 3 cut(s) 105, 111, 279
MspI CCGG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 1 cut(s) 222
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 308
PaeR7I CTCGAG 1 cut(s) 313
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 2 cut(s) 9, 175
PspPPI RGGWCCY 1 cut(s) 175
PspXI VCTCGAGB 1 cut(s) 313
RseI CAYNNNNRTG 3 cut(s) 105, 111, 279
SaqAI TTAA 1 cut(s) 86
Sau3AI GATC 1 cut(s) 222
Sau96I GGNCC 2 cut(s) 9, 175
SchI GAGTC 1 cut(s) 136
SetI ASST 9 cut(s) 77, 142, 157, 168, 177, 210, 240, 283, 290
Sfr274I CTCGAG 1 cut(s) 313
SinI GGWCC 1 cut(s) 175
SlaI CTCGAG 1 cut(s) 313
SmiMI CAYNNNNRTG 3 cut(s) 105, 111, 279
SmlI CTYRAG 1 cut(s) 313
SmoI CTYRAG 1 cut(s) 313
SsiI CCGC 1 cut(s) 219
SspMI CTAG 2 cut(s) 180, 352
StyI CCWWGG 1 cut(s) 179
TaqI TCGA 2 cut(s) 234, 314
Tru1I TTAA 1 cut(s) 86
Tru9I TTAA 1 cut(s) 86
TseFI GTSAC 1 cut(s) 308
Tsp45I GTSAC 1 cut(s) 308
TspDTI ATGAA 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 175
XhoI CTCGAG 1 cut(s) 313
XmaJI CCTAGG 1 cut(s) 179
XspI CTAG 2 cut(s) 180, 352
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.