pycom16g21180

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
Physical Location & Seq
Forward (+)
19432959 .. 19434821
1863 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g21180.2

Sequence Viewer

Length: 435 bp
ATGACAGCCCGTTCCGAAAATTTTAAAACGTACGCCTTGGTGTGGCTGATTGTGGACCACACACACACTCTCCCATATTTTCCCTCACCCTTTCCCCTATCCCTGCACCTGTCCCGTGCCATTTCCCTTCCCATTTTCATATCCCTTGTACGGACACACCCCAAAACCCTTGTAATCTTCACAGATCGAAGAAACAAAGTACATATCTATCCTCGTGAGGTCCATTGGAGTTCAACCATACCCATTTCAGCTTGTAGGAAGCTTGGTGAGGTCCTTAGGAGGCTCGGGGTGGTTCGTTTGAAGGTTTTGGACATCGGGATCGTGAGTTTCGAGGTTGGCCGGAGTTGGGGGTATTTTCCCAGTGATACCTACCCCGAGGACGAGCGTGGTCACTCGAGGCAAGGGGGTTACGACCCTTCCACATACCAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

145

Amino Acids

16.66

Weight (kDa)

9.71

Isoelectric Point (pI)

49.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 326
AcoI YGGCCR 1 cut(s) 337
AcsI RAATTY 1 cut(s) 19
AfaI GTAC 3 cut(s) 32, 150, 201
AfiI CCNNNNNNNGG 3 cut(s) 42, 150, 346
AgsI TTSAA 2 cut(s) 234, 301
AluBI AGCT 2 cut(s) 251, 262
AluI AGCT 2 cut(s) 251, 262
AlwI GGATC 1 cut(s) 326
Ama87I CYCGRG 3 cut(s) 284, 374, 394
AoxI GGCC 1 cut(s) 337
ApoI RAATTY 1 cut(s) 19
AspS9I GGNCC 3 cut(s) 55, 220, 271
AsuHPI GGTGA 2 cut(s) 78, 278
AvaI CYCGRG 3 cut(s) 284, 374, 394
AvaII GGWCC 3 cut(s) 55, 220, 271
AxyI CCTNAGG 1 cut(s) 275
BauI CACGAG 1 cut(s) 213
BfaI CTAG 1 cut(s) 433
Bme18I GGWCC 3 cut(s) 55, 220, 271
BmeT110I CYCGRG 3 cut(s) 284, 374, 394
BmgT120I GGNCC 3 cut(s) 55, 220, 271
BmrI ACTGGG 1 cut(s) 354
BmuI ACTGGG 1 cut(s) 354
BsaJI CCNNGG 2 cut(s) 36, 375
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 150, 346
Bse1I ACTGG 2 cut(s) 360, 427
Bse21I CCTNAGG 1 cut(s) 275
BseDI CCNNGG 2 cut(s) 36, 375
BseLI CCNNNNNNNGG 3 cut(s) 42, 150, 346
BseNI ACTGG 2 cut(s) 360, 427
BsgI GTGCAG 1 cut(s) 89
BshFI GGCC 1 cut(s) 339
BsiHKCI CYCGRG 3 cut(s) 284, 374, 394
BsiSI CCGG 1 cut(s) 340
BsiWI CGTACG 1 cut(s) 30
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 3 cut(s) 42, 150, 346
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 1 cut(s) 339
BsoBI CYCGRG 3 cut(s) 284, 374, 394
Bsp143I GATC 2 cut(s) 184, 318
BspANI GGCC 1 cut(s) 339
BspPI GGATC 1 cut(s) 326
BsrI ACTGG 2 cut(s) 360, 427
BssECI CCNNGG 2 cut(s) 36, 375
BssMI GATC 2 cut(s) 184, 318
BssSI CACGAG 1 cut(s) 213
BssT1I CCWWGG 1 cut(s) 36
Bst2BI CACGAG 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 275
BstKTI GATC 2 cut(s) 187, 321
BstMBI GATC 2 cut(s) 184, 318
Bsu36I CCTNAGG 1 cut(s) 275
BsuRI GGCC 1 cut(s) 339
BtsIMutI CAGTG 1 cut(s) 367
Cfr13I GGNCC 3 cut(s) 55, 220, 271
Csp6I GTAC 3 cut(s) 31, 149, 200
CviJI RGCY 6 cut(s) 8, 46, 251, 262, 283, 339
CviKI_1 RGCY 6 cut(s) 8, 46, 251, 262, 283, 339
CviQI GTAC 3 cut(s) 31, 149, 200
DdeI CTNAG 1 cut(s) 275
DpnI GATC 2 cut(s) 186, 320
DpnII GATC 2 cut(s) 184, 318
DraI TTTAAA 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 337
Eco130I CCWWGG 1 cut(s) 36
Eco47I GGWCC 3 cut(s) 55, 220, 271
Eco81I CCTNAGG 1 cut(s) 275
Eco88I CYCGRG 3 cut(s) 284, 374, 394
EcoO109I RGGNCCY 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 36
FaiI YATR 5 cut(s) 76, 140, 204, 239, 424
FaqI GGGAC 1 cut(s) 97
FspBI CTAG 1 cut(s) 433
HaeIII GGCC 1 cut(s) 339
HapII CCGG 1 cut(s) 340
HindIII AAGCTT 1 cut(s) 260
HpaII CCGG 1 cut(s) 340
HphI GGTGA 2 cut(s) 78, 278
Hpy166II GTNNAC 1 cut(s) 55
Hpy188I TCNGA 1 cut(s) 16
Hpy188III TCNNGA 3 cut(s) 215, 316, 322
Hpy8I GTNNAC 1 cut(s) 55
HpyAV CCTTC 3 cut(s) 137, 295, 426
HpyCH4IV ACGT 1 cut(s) 29
HpyCH4V TGCA 1 cut(s) 106
HpyF3I CTNAG 1 cut(s) 275
HpySE526I ACGT 1 cut(s) 29
Kzo9I GATC 2 cut(s) 184, 318
LpnPI CCDG 4 cut(s) 116, 122, 353, 373
MaeI CTAG 1 cut(s) 433
MaeII ACGT 1 cut(s) 29
MaeIII GTNAC 2 cut(s) 389, 407
MalI GATC 2 cut(s) 186, 320
MboI GATC 2 cut(s) 184, 318
MboII GAAGA 2 cut(s) 169, 201
MluCI AATT 1 cut(s) 19
MnlI CCTC 8 cut(s) 94, 211, 222, 262, 273, 325, 370, 390
MseI TTAA 1 cut(s) 24
MspI CCGG 1 cut(s) 340
NdeII GATC 2 cut(s) 184, 318
NmuCI GTSAC 1 cut(s) 389
PaeR7I CTCGAG 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 327
Pfl23II CGTACG 1 cut(s) 30
PpuMI RGGWCCY 1 cut(s) 271
Psp5II RGGWCCY 1 cut(s) 271
PspLI CGTACG 1 cut(s) 30
PspPI GGNCC 3 cut(s) 55, 220, 271
PspPPI RGGWCCY 1 cut(s) 271
PspXI VCTCGAGB 1 cut(s) 394
RsaI GTAC 3 cut(s) 32, 150, 201
RsaNI GTAC 3 cut(s) 31, 149, 200
SaqAI TTAA 1 cut(s) 24
Sau3AI GATC 2 cut(s) 184, 318
Sau96I GGNCC 3 cut(s) 55, 220, 271
SetI ASST 9 cut(s) 32, 111, 222, 253, 264, 273, 306, 336, 371
Sfr274I CTCGAG 1 cut(s) 394
SinI GGWCC 3 cut(s) 55, 220, 271
SlaI CTCGAG 1 cut(s) 394
SmlI CTYRAG 1 cut(s) 394
SmoI CTYRAG 1 cut(s) 394
Sse9I AATT 1 cut(s) 19
SspMI CTAG 1 cut(s) 433
StyI CCWWGG 1 cut(s) 36
TaiI ACGT 1 cut(s) 32
TaqI TCGA 3 cut(s) 187, 330, 395
TasI AATT 1 cut(s) 19
TatI WGTACW 1 cut(s) 199
Tru1I TTAA 1 cut(s) 24
Tru9I TTAA 1 cut(s) 24
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 1 cut(s) 389
Tsp45I GTSAC 1 cut(s) 389
TspDTI ATGAA 1 cut(s) 127
TspGWI ACGGA 1 cut(s) 166
TspRI CASTG 1 cut(s) 367
VpaK11BI GGWCC 3 cut(s) 55, 220, 271
XapI RAATTY 1 cut(s) 19
XhoI CTCGAG 1 cut(s) 394
XspI CTAG 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.