MD13G1253200.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
Physical Location & Seq
Reverse (-)
27174309 .. 27175023
715 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1253200.v1.1.491

Sequence Viewer

Length: 123 bp
ATGCCCTTGTCGGCGCATGGGACGTCAGAAATTTTTTCTAAAAATATGGGGATGTTCGTGAGGTTGTGTAGATCACGTTGGTATATTCAAACATCCCATTCGAGCAATTTGTTTCGCATATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

41

Amino Acids

4.69

Weight (kDa)

10.85

Isoelectric Point (pI)

58.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 26
AcsI RAATTY 1 cut(s) 30
AcyI GRCGYC 1 cut(s) 23
AgsI TTSAA 1 cut(s) 89
ApoI RAATTY 1 cut(s) 30
AspLEI GCGC 1 cut(s) 16
BsaHI GRCGYC 1 cut(s) 23
BseGI GGATG 2 cut(s) 57, 92
BslFI GGGAC 1 cut(s) 34
BsmFI GGGAC 1 cut(s) 34
Bsp143I GATC 1 cut(s) 71
BssMI GATC 1 cut(s) 71
BssNI GRCGYC 1 cut(s) 23
BstACI GRCGYC 1 cut(s) 23
BstF5I GGATG 2 cut(s) 57, 92
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 1 cut(s) 74
BstMBI GATC 1 cut(s) 71
BtsCI GGATG 2 cut(s) 57, 92
CfoI GCGC 1 cut(s) 16
CviAII CATG 1 cut(s) 17
DpnI GATC 1 cut(s) 73
DpnII GATC 1 cut(s) 71
FaeI CATG 1 cut(s) 20
FaiI YATR 5 cut(s) 18, 47, 84, 119, 121
FaqI GGGAC 1 cut(s) 34
FatI CATG 1 cut(s) 16
FokI GGATG 2 cut(s) 64, 79
GlaI GCGC 1 cut(s) 15
HhaI GCGC 1 cut(s) 16
Hin1I GRCGYC 1 cut(s) 23
Hin1II CATG 1 cut(s) 20
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 58
HpyCH4IV ACGT 2 cut(s) 23, 76
HpySE526I ACGT 2 cut(s) 23, 76
Hsp92I GRCGYC 1 cut(s) 23
Hsp92II CATG 1 cut(s) 20
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 1 cut(s) 71
MaeII ACGT 2 cut(s) 23, 76
MalI GATC 1 cut(s) 73
MboI GATC 1 cut(s) 71
MluCI AATT 2 cut(s) 30, 106
MnlI CCTC 1 cut(s) 54
NdeII GATC 1 cut(s) 71
NlaIII CATG 1 cut(s) 20
Sau3AI GATC 1 cut(s) 71
SetI ASST 3 cut(s) 26, 65, 79
SgeI CNNG 5 cut(s) 19, 29, 70, 87, 114
Sse9I AATT 2 cut(s) 30, 106
TaiI ACGT 2 cut(s) 26, 79
TaqI TCGA 1 cut(s) 101
TasI AATT 2 cut(s) 30, 106
XapI RAATTY 1 cut(s) 30
ZraI GACGTC 1 cut(s) 24
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.