MD11G1317300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0000513
Physical Location & Seq
Forward (+)
42901757 .. 42903526
1770 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1317300.v1.1.491

Sequence Viewer

Length: 267 bp
ATGCTGCTATATGGTTGGGATATTACTGTCATGACATTCATACATATCTGTACATGCTCATCTTGCTGCACCGGTGTTAGTACTCACCCCAGGGCCAGGGCTAGTCCTTCACGTGTATGTTCACAGCGCACCATTCGCTCGCCTTGGATCCAAGTTAGGTGCCAGTCCTGTCGGGTATATTGCATTAGGAAATCCGACTTGTATGTGATGTGCTTCTGCACCAGTCTACACGTGATTGTAGTACTAGAGCATATTGATTACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

10.14

Weight (kDa)

8.78

Isoelectric Point (pI)

62.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 159
AccI GTMKAC 1 cut(s) 226
AclWI GGATC 2 cut(s) 142, 155
AcvI CACGTG 2 cut(s) 113, 232
AfaI GTAC 3 cut(s) 52, 82, 243
AfiI CCNNNNNNNGG 1 cut(s) 96
AflIII ACRYGT 2 cut(s) 112, 229
AgeI ACCGGT 1 cut(s) 71
AjnI CCWGG 2 cut(s) 89, 95
AlwI GGATC 2 cut(s) 142, 155
AoxI GGCC 1 cut(s) 93
ApeKI GCWGC 2 cut(s) 4, 66
AsiGI ACCGGT 1 cut(s) 71
AspLEI GCGC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 93
AsuHPI GGTGA 1 cut(s) 77
BamHI GGATCC 1 cut(s) 147
BanI GGYRCC 1 cut(s) 159
BbrPI CACGTG 2 cut(s) 113, 232
BbvI GCAGC 1 cut(s) 53
BciT130I CCWGG 2 cut(s) 91, 97
BfaI CTAG 3 cut(s) 102, 245, 265
BisI GCNGC 2 cut(s) 5, 67
BlsI GCNGC 2 cut(s) 6, 68
BmcAI AGTACT 2 cut(s) 82, 243
Bme1390I CCNGG 2 cut(s) 91, 97
BmgT120I GGNCC 1 cut(s) 93
BmiI GGNNCC 2 cut(s) 149, 161
BmrFI CCNGG 2 cut(s) 91, 97
BsaAI YACGTR 2 cut(s) 113, 232
BsaJI CCNNGG 4 cut(s) 89, 90, 96, 143
BsaWI WCCGGW 1 cut(s) 71
Bsc4I CCNNNNNNNGG 1 cut(s) 96
Bse118I RCCGGY 1 cut(s) 71
Bse1I ACTGG 2 cut(s) 163, 222
BseBI CCWGG 2 cut(s) 91, 97
BseDI CCNNGG 4 cut(s) 89, 90, 96, 143
BseLI CCNNNNNNNGG 1 cut(s) 96
BseNI ACTGG 2 cut(s) 163, 222
BseXI GCAGC 1 cut(s) 53
BsgI GTGCAG 2 cut(s) 52, 202
BshFI GGCC 1 cut(s) 95
BshNI GGYRCC 1 cut(s) 159
BshTI ACCGGT 1 cut(s) 71
BsiSI CCGG 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 96
BsnI GGCC 1 cut(s) 95
Bsp1407I TGTACA 1 cut(s) 50
Bsp143I GATC 1 cut(s) 147
BspANI GGCC 1 cut(s) 95
BspHI TCATGA 1 cut(s) 30
BspLI GGNNCC 2 cut(s) 149, 161
BspPI GGATC 2 cut(s) 142, 155
BspT107I GGYRCC 1 cut(s) 159
BsrFI RCCGGY 1 cut(s) 71
BsrGI TGTACA 1 cut(s) 50
BsrI ACTGG 2 cut(s) 163, 222
BssAI RCCGGY 1 cut(s) 71
BssECI CCNNGG 4 cut(s) 89, 90, 96, 143
BssMI GATC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 143
Bst2UI CCWGG 2 cut(s) 91, 97
Bst4CI ACNGT 1 cut(s) 28
BstAUI TGTACA 1 cut(s) 50
BstBAI YACGTR 2 cut(s) 113, 232
BstC8I GCNNGC 1 cut(s) 140
BstHHI GCGC 1 cut(s) 129
BstKTI GATC 1 cut(s) 150
BstMBI GATC 1 cut(s) 147
BstMWI GCNNNNNNNGC 2 cut(s) 63, 135
BstNI CCWGG 2 cut(s) 91, 97
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 2 cut(s) 89, 95
BstV1I GCAGC 1 cut(s) 53
BstX2I RGATCY 1 cut(s) 147
BstYI RGATCY 1 cut(s) 147
BsuRI GGCC 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 140
CciI TCATGA 1 cut(s) 30
CfoI GCGC 1 cut(s) 129
Cfr10I RCCGGY 1 cut(s) 71
Cfr13I GGNCC 1 cut(s) 93
Csp6I GTAC 3 cut(s) 51, 81, 242
CspAI ACCGGT 1 cut(s) 71
CviAII CATG 2 cut(s) 31, 54
CviJI RGCY 2 cut(s) 95, 101
CviKI_1 RGCY 2 cut(s) 95, 101
CviQI GTAC 3 cut(s) 51, 81, 242
DpnI GATC 1 cut(s) 149
DpnII GATC 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 143
Eco72I CACGTG 2 cut(s) 113, 232
EcoRII CCWGG 2 cut(s) 89, 95
EcoT14I CCWWGG 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 143
FaeI CATG 2 cut(s) 34, 57
FatI CATG 2 cut(s) 30, 53
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 2 cut(s) 5, 67
Fsp4HI GCNGC 2 cut(s) 5, 67
FspBI CTAG 3 cut(s) 102, 245, 265
GlaI GCGC 1 cut(s) 128
GluI GCNGC 2 cut(s) 5, 67
HaeIII GGCC 1 cut(s) 95
HapII CCGG 1 cut(s) 72
HhaI GCGC 1 cut(s) 129
Hin1II CATG 2 cut(s) 34, 57
Hin6I GCGC 1 cut(s) 127
HinP1I GCGC 1 cut(s) 127
HpaII CCGG 1 cut(s) 72
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 2 cut(s) 122, 227
Hpy188I TCNGA 1 cut(s) 196
Hpy188III TCNNGA 1 cut(s) 31
Hpy8I GTNNAC 2 cut(s) 122, 227
HpyAV CCTTC 1 cut(s) 117
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 2 cut(s) 112, 231
HpyCH4V TGCA 3 cut(s) 69, 183, 219
HpyF10VI GCNNNNNNNGC 2 cut(s) 63, 135
HpySE526I ACGT 2 cut(s) 112, 231
Hsp92II CATG 2 cut(s) 34, 57
HspAI GCGC 1 cut(s) 127
Kzo9I GATC 1 cut(s) 147
LpnPI CCDG 8 cut(s) 76, 82, 85, 103, 109, 176, 181, 235
Lsp1109I GCAGC 1 cut(s) 53
MaeI CTAG 3 cut(s) 102, 245, 265
MaeII ACGT 2 cut(s) 112, 231
MalI GATC 1 cut(s) 149
MboI GATC 1 cut(s) 147
MflI RGATCY 1 cut(s) 147
MmeI TCCRAC 1 cut(s) 219
MslI CAYNNNNRTG 1 cut(s) 115
MspI CCGG 1 cut(s) 72
MspR9I CCNGG 2 cut(s) 91, 97
MvaI CCWGG 2 cut(s) 91, 97
MwoI GCNNNNNNNGC 2 cut(s) 63, 135
NdeII GATC 1 cut(s) 147
NlaIII CATG 2 cut(s) 34, 57
NlaIV GGNNCC 2 cut(s) 149, 161
NspI RCATGY 1 cut(s) 57
PagI TCATGA 1 cut(s) 30
PasI CCCWGGG 1 cut(s) 90
PinAI ACCGGT 1 cut(s) 71
PkrI GCNGC 2 cut(s) 6, 68
PmaCI CACGTG 2 cut(s) 113, 232
PmlI CACGTG 2 cut(s) 113, 232
Ppu21I YACGTR 2 cut(s) 113, 232
Psp6I CCWGG 2 cut(s) 89, 95
PspCI CACGTG 2 cut(s) 113, 232
PspGI CCWGG 2 cut(s) 89, 95
PspN4I GGNNCC 2 cut(s) 149, 161
PspPI GGNCC 1 cut(s) 93
PsuI RGATCY 1 cut(s) 147
RsaI GTAC 3 cut(s) 52, 82, 243
RsaNI GTAC 3 cut(s) 51, 81, 242
RseI CAYNNNNRTG 1 cut(s) 115
SatI GCNGC 2 cut(s) 5, 67
Sau3AI GATC 1 cut(s) 147
Sau96I GGNCC 1 cut(s) 93
ScaI AGTACT 2 cut(s) 82, 243
ScrFI CCNGG 2 cut(s) 91, 97
SetI ASST 4 cut(s) 115, 161, 234, 266
SgrAI CRCCGGYG 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 115
SspMI CTAG 3 cut(s) 102, 245, 265
StyD4I CCNGG 2 cut(s) 89, 95
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 2 cut(s) 115, 234
TatI WGTACW 3 cut(s) 50, 80, 241
TseI GCWGC 2 cut(s) 4, 66
TspDTI ATGAA 1 cut(s) 28
XceI RCATGY 1 cut(s) 57
XmiI GTMKAC 1 cut(s) 226
XspI CTAG 3 cut(s) 102, 245, 265
ZrmI AGTACT 2 cut(s) 82, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.