pycom05g23950

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
25588579 .. 25589448
870 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g23950.6

Sequence Viewer

Length: 609 bp
ATGAGATATAAGATTATAGGAGAAATTAGTCTTTTTCAATTTTTTGTCAAGGTCCTTGCTATTAATAACATCATTAATTATTTCAATAATAAAATATTTTTTATTTCTAAATATATTCATTTAATGTTAAAACTGTTACAATTAGTATATTTATATTTATGGTTACATTTTTTATCATATATTTTTATTTTTAGTTTGTACCCATTTTTAATTTGCAACCCATTTTTAATTTGTACCAATTTTCTTTTTAGTTTTAATTTGTACCCATTTATTAATTTCTTTTTGTGCCCATATTTTATAAAGTTTTATTTGTATTTGTACCCATGTTTTTATTTATTTATATGTATGTACCATGCATGTAATTTTTTTTTTAAAATTTTTAATCTTAAAATGTATTCATTCTTAAATATACCAATTTTTTATATTTTTAAACTTATATGGGTACATTCTTTTTTCTTTGATTTGAGAATAATGTACCCATGTTTTGATACAATAATTTTTTGGTTAATTTTGATTAATGTACGCATGTTTATATATATATACACACACAATAGTATATTTATATTTTTAATCCCACAAATTATGGTTTTTTATTTAAAATCTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

25.29

Weight (kDa)

9.25

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 299
AcsI RAATTY 1 cut(s) 375
AfaI GTAC 8 cut(s) 200, 235, 263, 320, 350, 444, 476, 522
AgsI TTSAA 2 cut(s) 38, 85
ApoI RAATTY 1 cut(s) 375
AseI ATTAAT 4 cut(s) 63, 75, 273, 516
AspS9I GGNCC 1 cut(s) 52
AvaII GGWCC 1 cut(s) 52
BaeGI GKGCMC 1 cut(s) 290
Bme18I GGWCC 1 cut(s) 52
BmgT120I GGNCC 1 cut(s) 52
BseSI GKGCMC 1 cut(s) 290
Bsp1286I GDGCHC 1 cut(s) 290
Bst4CI ACNGT 1 cut(s) 135
BstNSI RCATGY 2 cut(s) 360, 529
BstSLI GKGCMC 1 cut(s) 290
Cfr13I GGNCC 1 cut(s) 52
Csp6I GTAC 8 cut(s) 199, 234, 262, 319, 349, 443, 475, 521
CviAII CATG 5 cut(s) 324, 353, 357, 480, 526
CviQI GTAC 8 cut(s) 199, 234, 262, 319, 349, 443, 475, 521
DraI TTTAAA 3 cut(s) 373, 430, 597
Eco47I GGWCC 1 cut(s) 52
EcoO109I RGGNCCY 1 cut(s) 52
EcoT22I ATGCAT 1 cut(s) 358
FaeI CATG 5 cut(s) 327, 356, 360, 483, 529
FatI CATG 5 cut(s) 323, 352, 356, 479, 525
Hin1II CATG 5 cut(s) 327, 356, 360, 483, 529
HpyCH4III ACNGT 1 cut(s) 135
HpyCH4V TGCA 2 cut(s) 216, 356
Hsp92II CATG 5 cut(s) 327, 356, 360, 483, 529
MaeIII GTNAC 2 cut(s) 135, 162
MhlI GDGCHC 1 cut(s) 290
Mph1103I ATGCAT 1 cut(s) 358
NlaIII CATG 5 cut(s) 327, 356, 360, 483, 529
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 2 cut(s) 360, 529
PpuMI RGGWCCY 1 cut(s) 52
PshBI ATTAAT 4 cut(s) 63, 75, 273, 516
PsiI TTATAA 1 cut(s) 299
Psp5II RGGWCCY 1 cut(s) 52
PspPI GGNCC 1 cut(s) 52
PspPPI RGGWCCY 1 cut(s) 52
RsaI GTAC 8 cut(s) 200, 235, 263, 320, 350, 444, 476, 522
RsaNI GTAC 8 cut(s) 199, 234, 262, 319, 349, 443, 475, 521
Sau96I GGNCC 1 cut(s) 52
SduI GDGCHC 1 cut(s) 290
SetI ASST 1 cut(s) 54
SgeI CNNG 7 cut(s) 61, 68, 336, 365, 369, 492, 538
SinI GGWCC 1 cut(s) 52
SspI AATATT 1 cut(s) 96
TaaI ACNGT 1 cut(s) 135
TspDTI ATGAA 2 cut(s) 107, 387
VpaK11BI GGWCC 1 cut(s) 52
VspI ATTAAT 4 cut(s) 63, 75, 273, 516
XapI RAATTY 1 cut(s) 375
XceI RCATGY 2 cut(s) 360, 529
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.