Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012556

Orthogroup ID

OG0000513

Physical Location & Seq

Genomic Coordinates Forward (+)

181949 .. 182299

Gene Structure 351 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12556g00120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGCCACCACCTACGGGTCGAGGTGGTGCATACCACTATCAGGGTGATGCTGTCCCTTATGCTCCGAGGCAGTATCAGTATCCCCAGGATCCCTATTCTCAGGGTGGCTATCCTCAGTATTCGGGCGGCTATATGCCGTATCCTCCAGCTCCAGCGGGTGGTTCTCAGTGGTATCAGGGAGGACAGTATCAGCAGGGGGAGATTGCCACTAGCAGTGCAGGGTCTTCGAGACAGTCGGGTCAGCCCAGTCAGGGGCGTGGTGCTCAGGGACGCGGCGTTCAGGCGAGCAGAGGCCGCGGCGGGCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

103

Amino Acids

10.76

Weight (kDa)

9.69

Isoelectric Point (pI)

78.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000513)

Species	Orthologous Gene IDs
malus_domestica	MD00G1165900.v1.1 MD01G1149400.v1.1 MD02G1188500.v1.1 MD06G1074500.v1.1 MD06G1183900.v1.1 MD08G1220300.v1.1 MD11G1317300.v1.1 MD12G1033900.v1.1 MD13G1075700.v1.1 MD13G1253200.v1.1 MD16G1023900.v1.1
pyrus_communis	pycom01g00140 pycom01g00540 pycom01g00600 pycom01g00660 pycom01g00920 pycom01g00970 pycom01g02740 pycom01g04610 pycom01g10660 pycom01g21320 pycom02g07390 pycom02g17600 pycom02g18670 pycom02g18770 pycom03g02770 pycom03g15990 pycom03g21130 pycom04g16620 pycom04g21450 pycom05g06020 pycom05g08170 pycom05g13560 pycom05g22750 pycom05g23690 pycom05g23730 pycom05g23760 pycom05g23950 pycom05g24030 pycom07g12530 pycom07g12550 pycom08g01040 pycom08g16160 pycom10g03920 pycom11g13260 pycom11g13940 pycom11g16660 pycom12556g00120 pycom12661g00080 pycom12g07880 pycom13g05260 pycom13g11350 pycom13g15930 pycom13g23350 pycom13g23690 pycom13g23750 pycom13g23880 pycom13g24500 pycom13g24620 pycom13g26020 pycom13g26300 pycom13g27320 pycom13g28360 pycom14g12840 pycom15g17240 pycom15g31400 pycom15g32660 pycom16g21180 pycom16g21190 pycom16g22580 pycom16g24640 pycom16g26060 pycom16g26400 pycom16g26410 pycom17g03930 pycom17g16310 pycom17g16320 pycom17g16920 pycom420g00790 pycom520g00370 pycom520g00530 pycom520g00830 pycom520g00840 pycom520g00880 pycom520g00930 pycom808g00600
rosa_chinensis	RchiOBHm_Chr2g0089701

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	237
AccB7I	CCANNNNNTGG	1 cut(s)	158
AccII	CGCG	2 cut(s)	273, 297
AciI	CCGC	6 cut(s)	126, 155, 273, 295, 297, 300
AclWI	GGATC	2 cut(s)	83, 96
AfiI	CCNNNNNNNGG	5 cut(s)	14, 40, 158, 251, 252
AjnI	CCWGG	1 cut(s)	84
AloI	GAACNNNNNNTCC	2 cut(s)	261, 293
AluBI	AGCT	1 cut(s)	149
AluI	AGCT	1 cut(s)	149
Alw21I	GWGCWC	1 cut(s)	265
Alw26I	GTCTC	1 cut(s)	223
AlwI	GGATC	2 cut(s)	83, 96
AoxI	GGCC	1 cut(s)	292
AsuHPI	GGTGA	1 cut(s)	56
BamHI	GGATCC	1 cut(s)	88
BbsI	GAAGAC	1 cut(s)	216
Bbv12I	GWGCWC	1 cut(s)	265
BceAI	ACGGC	1 cut(s)	121
BcgI	CGANNNNNNTGC	2 cut(s)	207, 241
BciT130I	CCWGG	1 cut(s)	86
BciVI	GTATCC	2 cut(s)	90, 150
BcoDI	GTCTC	1 cut(s)	223
BfaI	CTAG	1 cut(s)	210
BfuI	GTATCC	2 cut(s)	90, 150
BisI	GCNGC	4 cut(s)	127, 274, 295, 298
BlsI	GCNGC	4 cut(s)	128, 275, 296, 299
Bme1390I	CCNGG	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	1 cut(s)	86
BmrI	ACTGGG	1 cut(s)	240
BmsI	GCATC	1 cut(s)	37
BmuI	ACTGGG	1 cut(s)	240
BpiI	GAAGAC	1 cut(s)	216
BpmI	CTGGAG	2 cut(s)	129, 135
Bpu10I	CCTNAGC	1 cut(s)	264
BsaJI	CCNNGG	3 cut(s)	65, 84, 295
Bsc4I	CCNNNNNNNGG	5 cut(s)	14, 40, 158, 251, 252
Bse1I	ACTGG	1 cut(s)	246
BseBI	CCWGG	1 cut(s)	86
BseDI	CCNNGG	3 cut(s)	65, 84, 295
BseLI	CCNNNNNNNGG	5 cut(s)	14, 40, 158, 251, 252
BseMII	CTCAG	4 cut(s)	113, 128, 179, 278
BseNI	ACTGG	1 cut(s)	246
BsgI	GTGCAG	1 cut(s)	237
Bsh1236I	CGCG	2 cut(s)	273, 297
BshFI	GGCC	1 cut(s)	294
BsiHKAI	GWGCWC	1 cut(s)	265
BslFI	GGGAC	2 cut(s)	38, 282
BslI	CCNNNNNNNGG	5 cut(s)	14, 40, 158, 251, 252
BsmAI	GTCTC	1 cut(s)	223
BsmFI	GGGAC	2 cut(s)	38, 282
BsnI	GGCC	1 cut(s)	294
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	88
BspACI	CCGC	6 cut(s)	126, 155, 273, 295, 297, 300
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	4 cut(s)	112, 127, 178, 277
BspFNI	CGCG	2 cut(s)	273, 297
BspLI	GGNNCC	1 cut(s)	90
BspPI	GGATC	2 cut(s)	83, 96
BsrI	ACTGG	1 cut(s)	246
BssECI	CCNNGG	3 cut(s)	65, 84, 295
BssMI	GATC	1 cut(s)	88
Bst2UI	CCWGG	1 cut(s)	86
Bst4CI	ACNGT	2 cut(s)	186, 234
BstC8I	GCNNGC	2 cut(s)	286, 302
BstDEI	CTNAG	4 cut(s)	99, 114, 165, 264
BstDSI	CCRYGG	1 cut(s)	295
BstFNI	CGCG	2 cut(s)	273, 297
BstKTI	GATC	1 cut(s)	91
BstMAI	GTCTC	1 cut(s)	223
BstMBI	GATC	1 cut(s)	88
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNI	CCWGG	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	84
BstUI	CGCG	2 cut(s)	273, 297
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	88
BstYI	RGATCY	1 cut(s)	88
BsuI	GTATCC	2 cut(s)	90, 150
BsuRI	GGCC	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	295
BtsI	GCAGTG	1 cut(s)	220
BtsIMutI	CAGTG	2 cut(s)	173, 220
Cac8I	GCNNGC	2 cut(s)	286, 302
Cfr42I	CCGCGG	1 cut(s)	298
CseI	GACGC	1 cut(s)	279
CviJI	RGCY	5 cut(s)	108, 129, 149, 244, 294
CviKI_1	RGCY	5 cut(s)	108, 129, 149, 244, 294
DdeI	CTNAG	4 cut(s)	99, 114, 165, 264
DpnI	GATC	1 cut(s)	90
DpnII	GATC	1 cut(s)	88
DrdI	GACNNNNNNGTC	1 cut(s)	237
DseDI	GACNNNNNNGTC	1 cut(s)	237
EcoRII	CCWGG	1 cut(s)	84
FaiI	YATR	4 cut(s)	31, 60, 132, 134
FaqI	GGGAC	2 cut(s)	38, 282
FauI	CCCGC	2 cut(s)	148, 293
Fnu4HI	GCNGC	4 cut(s)	127, 274, 295, 298
Fsp4HI	GCNGC	4 cut(s)	127, 274, 295, 298
FspBI	CTAG	1 cut(s)	210
GluI	GCNGC	4 cut(s)	127, 274, 295, 298
GsuI	CTGGAG	2 cut(s)	129, 135
HaeIII	GGCC	1 cut(s)	294
HgaI	GACGC	1 cut(s)	279
HphI	GGTGA	1 cut(s)	56
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	1 cut(s)	228
HpyCH4III	ACNGT	2 cut(s)	186, 234
HpyCH4V	TGCA	2 cut(s)	29, 218
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	4 cut(s)	99, 114, 165, 264
KspI	CCGCGG	1 cut(s)	298
Kzo9I	GATC	1 cut(s)	88
LmnI	GCTCC	2 cut(s)	67, 154
LweI	GCATC	1 cut(s)	37
MaeI	CTAG	1 cut(s)	210
MalI	GATC	1 cut(s)	90
MboI	GATC	1 cut(s)	88
MboII	GAAGA	1 cut(s)	216
MflI	RGATCY	1 cut(s)	88
MhlI	GDGCHC	1 cut(s)	265
MnlI	CCTC	6 cut(s)	14, 60, 123, 153, 173, 284
MspA1I	CMGCKG	2 cut(s)	155, 297
MspR9I	CCNGG	1 cut(s)	86
MvaI	CCWGG	1 cut(s)	86
MvnI	CGCG	2 cut(s)	273, 297
MwoI	GCNNNNNNNGC	1 cut(s)	294
NdeII	GATC	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	90
PflMI	CCANNNNNTGG	1 cut(s)	158
PkrI	GCNGC	4 cut(s)	128, 275, 296, 299
Psp6I	CCWGG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	88
SacII	CCGCGG	1 cut(s)	298
SatI	GCNGC	4 cut(s)	127, 274, 295, 298
Sau3AI	GATC	1 cut(s)	88
ScrFI	CCNGG	1 cut(s)	86
SduI	GDGCHC	1 cut(s)	265
SetI	ASST	3 cut(s)	13, 25, 151
SfaNI	GCATC	1 cut(s)	37
Sfr303I	CCGCGG	1 cut(s)	298
SgrBI	CCGCGG	1 cut(s)	298
SsiI	CCGC	6 cut(s)	126, 155, 273, 295, 297, 300
SspMI	CTAG	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	186, 234
TaqI	TCGA	2 cut(s)	19, 227
TauI	GCSGC	4 cut(s)	129, 276, 297, 300
TscAI	CASTG	2 cut(s)	173, 220
TspRI	CASTG	2 cut(s)	173, 220
Van91I	CCANNNNNTGG	1 cut(s)	158
XspI	CTAG	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.