pycom04g21450
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0000513
Physical Location & Seq
Reverse (-)
22611606 .. 22612586
981 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g21450.1

Sequence Viewer

Length: 237 bp
ATGCACACGTTAATTCTTGTCCTTAGGAGGCTCGGGGTGGTTCGTTTGAAGGTTTTGGACGTCGGGATCGTGAGTTGCAAGTTTGGCCGGAGTTGGTGGTGTTTTCCCGGCGAGATTCCGTGGGTTTTAGTGCTTGAAAGTGTTGTTTCGCATATAGGTGAGACCTATCCCGAGGACGAGCGCGGTCACTCGAGGCAAGGGGGTTACGACCCTTCTACATACCATGCTCCCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

79

Amino Acids

8.82

Weight (kDa)

6.89

Isoelectric Point (pI)

64.83

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 63
AccII CGCG 1 cut(s) 183
AciI CCGC 2 cut(s) 183, 231
AclWI GGATC 1 cut(s) 74
AcoI YGGCCR 1 cut(s) 85
AcyI GRCGYC 1 cut(s) 60
AflIII ACRYGT 1 cut(s) 6
AgsI TTSAA 2 cut(s) 49, 137
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 74
Ama87I CYCGRG 3 cut(s) 32, 170, 190
AoxI GGCC 1 cut(s) 85
AspLEI GCGC 1 cut(s) 183
AsuC2I CCSGG 1 cut(s) 108
AsuHPI GGTGA 1 cut(s) 170
AvaI CYCGRG 3 cut(s) 32, 170, 190
AxyI CCTNAGG 1 cut(s) 23
BcnI CCSGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 235
Bme1390I CCNGG 1 cut(s) 108
BmeT110I CYCGRG 3 cut(s) 32, 170, 190
BmrFI CCNGG 1 cut(s) 108
BpuMI CCSGG 1 cut(s) 108
BsaHI GRCGYC 1 cut(s) 60
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 2 cut(s) 119, 171
Bse21I CCTNAGG 1 cut(s) 23
BseDI CCNNGG 2 cut(s) 119, 171
Bsh1236I CGCG 1 cut(s) 183
BshFI GGCC 1 cut(s) 87
BsiHKCI CYCGRG 3 cut(s) 32, 170, 190
BsiSI CCGG 2 cut(s) 88, 108
BsmAI GTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 87
Bso31I GGTCTC 1 cut(s) 155
BsoBI CYCGRG 3 cut(s) 32, 170, 190
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 2 cut(s) 183, 231
BspANI GGCC 1 cut(s) 87
BspFNI CGCG 1 cut(s) 183
BspPI GGATC 1 cut(s) 74
BspTNI GGTCTC 1 cut(s) 155
BssECI CCNNGG 2 cut(s) 119, 171
BssMI GATC 1 cut(s) 66
BssNI GRCGYC 1 cut(s) 60
BstACI GRCGYC 1 cut(s) 60
BstDEI CTNAG 1 cut(s) 23
BstDSI CCRYGG 1 cut(s) 119
BstFNI CGCG 1 cut(s) 183
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 1 cut(s) 84
BstSCI CCNGG 1 cut(s) 106
BstUI CGCG 1 cut(s) 183
Bsu36I CCTNAGG 1 cut(s) 23
BsuRI GGCC 1 cut(s) 87
BtgI CCRYGG 1 cut(s) 119
CfoI GCGC 1 cut(s) 183
CviAII CATG 1 cut(s) 224
CviJI RGCY 2 cut(s) 31, 87
CviKI_1 RGCY 2 cut(s) 31, 87
DdeI CTNAG 1 cut(s) 23
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
EaeI YGGCCR 1 cut(s) 85
Eco31I GGTCTC 1 cut(s) 155
Eco81I CCTNAGG 1 cut(s) 23
Eco88I CYCGRG 3 cut(s) 32, 170, 190
FaeI CATG 1 cut(s) 227
FaiI YATR 4 cut(s) 153, 155, 220, 225
FatI CATG 1 cut(s) 223
FspBI CTAG 1 cut(s) 235
GlaI GCGC 1 cut(s) 182
HaeIII GGCC 1 cut(s) 87
HapII CCGG 2 cut(s) 88, 108
HhaI GCGC 1 cut(s) 183
Hin1I GRCGYC 1 cut(s) 60
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HinfI GANTC 1 cut(s) 115
HpaII CCGG 2 cut(s) 88, 108
HphI GGTGA 1 cut(s) 170
Hpy188III TCNNGA 3 cut(s) 64, 70, 170
Hpy99I CGWCG 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 43, 222
HpyCH4IV ACGT 2 cut(s) 8, 60
HpyCH4V TGCA 2 cut(s) 4, 78
HpyF10VI GCNNNNNNNGC 1 cut(s) 84
HpyF3I CTNAG 1 cut(s) 23
HpySE526I ACGT 2 cut(s) 8, 60
Hsp92I GRCGYC 1 cut(s) 60
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 1 cut(s) 181
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 232
LpnPI CCDG 2 cut(s) 101, 121
MaeI CTAG 1 cut(s) 235
MaeII ACGT 2 cut(s) 8, 60
MaeIII GTNAC 2 cut(s) 185, 203
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MluCI AATT 1 cut(s) 12
MnlI CCTC 3 cut(s) 21, 166, 186
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 1 cut(s) 156
MspI CCGG 2 cut(s) 88, 108
MspR9I CCNGG 1 cut(s) 108
MvnI CGCG 1 cut(s) 183
MwoI GCNNNNNNNGC 1 cut(s) 84
NciI CCSGG 1 cut(s) 108
NdeII GATC 1 cut(s) 66
NlaIII CATG 1 cut(s) 227
NmuCI GTSAC 1 cut(s) 185
PaeR7I CTCGAG 1 cut(s) 190
PcsI WCGNNNNNNNCGW 1 cut(s) 66
PfeI GAWTC 1 cut(s) 115
PspXI VCTCGAGB 1 cut(s) 190
RseI CAYNNNNRTG 1 cut(s) 156
SaqAI TTAA 1 cut(s) 11
Sau3AI GATC 1 cut(s) 66
ScrFI CCNGG 1 cut(s) 108
SetI ASST 5 cut(s) 11, 54, 63, 160, 167
Sfr274I CTCGAG 1 cut(s) 190
SlaI CTCGAG 1 cut(s) 190
SmiMI CAYNNNNRTG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 190
SmoI CTYRAG 1 cut(s) 190
Sse9I AATT 1 cut(s) 12
SsiI CCGC 2 cut(s) 183, 231
SspMI CTAG 1 cut(s) 235
StyD4I CCNGG 1 cut(s) 106
TaiI ACGT 2 cut(s) 11, 63
TaqI TCGA 1 cut(s) 191
TasI AATT 1 cut(s) 12
TfiI GAWTC 1 cut(s) 115
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TseFI GTSAC 1 cut(s) 185
Tsp45I GTSAC 1 cut(s) 185
TspGWI ACGGA 1 cut(s) 108
XhoI CTCGAG 1 cut(s) 190
XspI CTAG 1 cut(s) 235
ZraI GACGTC 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.