MD01G1149400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0000513
Physical Location & Seq
Forward (+)
25825317 .. 25827081
1765 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1149400.v1.1.491

Sequence Viewer

Length: 216 bp
ATGTGGCCGCATGTGGGGGCGCGTATTGCCGTGCCTTGGCCGGCGCGTGGGTGGTCAGAAAATTATTCTAAAAATATGGGGATGTTCGTGGAGTTGTGTAGATCACATTGGTATATTCAAACACCCCATTTGAGCATTGTGAGACTTATCTCGAGGACGAGCGTGTTCAAGGGCGACTCAGGGGCTACGACCCTTCGACATACCAGTTTTAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.22

Weight (kDa)

10.87

Isoelectric Point (pI)

25.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 22, 46
AciI CCGC 1 cut(s) 8
AcoI YGGCCR 2 cut(s) 5, 38
AfiI CCNNNNNNNGG 4 cut(s) 14, 36, 47, 210
AgsI TTSAA 2 cut(s) 119, 169
Alw26I GTCTC 1 cut(s) 136
Ama87I CYCGRG 1 cut(s) 151
AoxI GGCC 2 cut(s) 5, 38
AspLEI GCGC 2 cut(s) 22, 46
AvaI CYCGRG 1 cut(s) 151
BceAI ACGGC 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 136
BisI GCNGC 1 cut(s) 8
BlsI GCNGC 1 cut(s) 9
BmeT110I CYCGRG 1 cut(s) 151
BsaJI CCNNGG 1 cut(s) 35
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 36, 47, 210
Bse118I RCCGGY 1 cut(s) 40
Bse1I ACTGG 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 35
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 4 cut(s) 14, 36, 47, 210
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 204
Bsh1236I CGCG 2 cut(s) 22, 46
BshFI GGCC 2 cut(s) 7, 40
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 1 cut(s) 41
BslI CCNNNNNNNGG 4 cut(s) 14, 36, 47, 210
BsmAI GTCTC 1 cut(s) 136
BsnI GGCC 2 cut(s) 7, 40
BsoBI CYCGRG 1 cut(s) 151
Bsp143I GATC 1 cut(s) 101
BspACI CCGC 1 cut(s) 8
BspANI GGCC 2 cut(s) 7, 40
BspCNI CTCAG 1 cut(s) 191
BspFNI CGCG 2 cut(s) 22, 46
BsrFI RCCGGY 1 cut(s) 40
BsrI ACTGG 1 cut(s) 204
BssAI RCCGGY 1 cut(s) 40
BssECI CCNNGG 1 cut(s) 35
BssMI GATC 1 cut(s) 101
BssT1I CCWWGG 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 1 cut(s) 178
BstF5I GGATG 1 cut(s) 87
BstFNI CGCG 2 cut(s) 22, 46
BstHHI GCGC 2 cut(s) 22, 46
BstKTI GATC 1 cut(s) 104
BstMAI GTCTC 1 cut(s) 136
BstMBI GATC 1 cut(s) 101
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstNSI RCATGY 1 cut(s) 14
BstUI CGCG 2 cut(s) 22, 46
BsuRI GGCC 2 cut(s) 7, 40
BtsCI GGATG 1 cut(s) 87
Cac8I GCNNGC 1 cut(s) 42
CfoI GCGC 2 cut(s) 22, 46
Cfr10I RCCGGY 1 cut(s) 40
CviAII CATG 1 cut(s) 11
CviJI RGCY 3 cut(s) 7, 40, 185
CviKI_1 RGCY 3 cut(s) 7, 40, 185
DdeI CTNAG 1 cut(s) 178
DpnI GATC 1 cut(s) 103
DpnII GATC 1 cut(s) 101
EaeI YGGCCR 2 cut(s) 5, 38
Eco130I CCWWGG 1 cut(s) 35
Eco88I CYCGRG 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 35
ErhI CCWWGG 1 cut(s) 35
FaeI CATG 1 cut(s) 14
FaiI YATR 4 cut(s) 12, 77, 114, 201
FatI CATG 1 cut(s) 10
Fnu4HI GCNGC 1 cut(s) 8
FokI GGATG 1 cut(s) 94
Fsp4HI GCNGC 1 cut(s) 8
GlaI GCGC 2 cut(s) 21, 45
GluI GCNGC 1 cut(s) 8
HaeIII GGCC 2 cut(s) 7, 40
HapII CCGG 1 cut(s) 41
HhaI GCGC 2 cut(s) 22, 46
Hin1II CATG 1 cut(s) 14
Hin6I GCGC 2 cut(s) 20, 44
HinP1I GCGC 2 cut(s) 20, 44
HinfI GANTC 1 cut(s) 176
HpaII CCGG 1 cut(s) 41
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 1 cut(s) 151
HpyAV CCTTC 1 cut(s) 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpyF3I CTNAG 1 cut(s) 178
Hsp92II CATG 1 cut(s) 14
HspAI GCGC 2 cut(s) 20, 44
KroI GCCGGC 1 cut(s) 40
KroNI GCCGGC 1 cut(s) 42
Kzo9I GATC 1 cut(s) 101
LpnPI CCDG 2 cut(s) 54, 165
MalI GATC 1 cut(s) 103
MboI GATC 1 cut(s) 101
MluCI AATT 1 cut(s) 61
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 1 cut(s) 147
MroNI GCCGGC 1 cut(s) 40
MspI CCGG 1 cut(s) 41
MvnI CGCG 2 cut(s) 22, 46
MwoI GCNNNNNNNGC 1 cut(s) 26
NaeI GCCGGC 1 cut(s) 42
NdeII GATC 1 cut(s) 101
NgoMIV GCCGGC 1 cut(s) 40
NlaIII CATG 1 cut(s) 14
NspI RCATGY 1 cut(s) 14
PaeR7I CTCGAG 1 cut(s) 151
PdiI GCCGGC 1 cut(s) 42
PkrI GCNGC 1 cut(s) 9
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
SatI GCNGC 1 cut(s) 8
Sau3AI GATC 1 cut(s) 101
SchI GAGTC 1 cut(s) 170
SetI ASST 1 cut(s) 215
Sfr274I CTCGAG 1 cut(s) 151
SlaI CTCGAG 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 151
SmoI CTYRAG 1 cut(s) 151
Sse9I AATT 1 cut(s) 61
SsiI CCGC 1 cut(s) 8
StyI CCWWGG 1 cut(s) 35
TaqI TCGA 2 cut(s) 152, 196
TasI AATT 1 cut(s) 61
TauI GCSGC 1 cut(s) 10
XceI RCATGY 1 cut(s) 14
XhoI CTCGAG 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.