pycom07g12530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000513
Physical Location & Seq
Forward (+)
13878458 .. 13878746
289 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g12530.1

Sequence Viewer

Length: 213 bp
ATGGTATATCCATCTGTATATTACTTGCATATAATTATTGGGAATGCTTTCAAGTGCAAAGGTGGACGCAGGACACCCAGAAACCTGCACCCTGGTGTTAGTGTTCCCGCCCGTGGCCAGGGCACAGTCCTTCACGTGATGTTCACCTCCCGTACCTTACGCTCACCTTGGATTCAAGGTAGGTGCACAGTCCTGTCGTACAGACCACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.91

Weight (kDa)

11.29

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 93
AciI CCGC 1 cut(s) 108
AcoI YGGCCR 1 cut(s) 115
AcvI CACGTG 1 cut(s) 136
AfaI GTAC 2 cut(s) 154, 200
AfiI CCNNNNNNNGG 2 cut(s) 113, 118
AgsI TTSAA 2 cut(s) 52, 176
AjnI CCWGG 2 cut(s) 91, 117
AleI CACNNNNGTG 1 cut(s) 93
Alw21I GWGCWC 1 cut(s) 188
Alw44I GTGCAC 1 cut(s) 184
AoxI GGCC 1 cut(s) 115
ApaLI GTGCAC 1 cut(s) 184
Asp700I GAANNNNTTC 1 cut(s) 47
AsuHPI GGTGA 2 cut(s) 136, 156
BaeGI GKGCMC 2 cut(s) 125, 188
BalI TGGCCA 1 cut(s) 117
BbrPI CACGTG 1 cut(s) 136
Bbv12I GWGCWC 1 cut(s) 188
BccI CCATC 1 cut(s) 19
BciT130I CCWGG 2 cut(s) 93, 119
BfuAI ACCTGC 1 cut(s) 93
Bme1390I CCNGG 2 cut(s) 93, 119
BmrFI CCNGG 2 cut(s) 93, 119
BsaAI YACGTR 1 cut(s) 136
BsaJI CCNNGG 4 cut(s) 91, 112, 118, 167
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 118
BseBI CCWGG 2 cut(s) 93, 119
BseDI CCNNGG 4 cut(s) 91, 112, 118, 167
BseLI CCNNNNNNNGG 2 cut(s) 113, 118
BseSI GKGCMC 2 cut(s) 125, 188
BsgI GTGCAG 1 cut(s) 71
BshFI GGCC 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 188
BslI CCNNNNNNNGG 2 cut(s) 113, 118
BsmI GAATGC 1 cut(s) 49
BsnI GGCC 1 cut(s) 117
Bsp1286I GDGCHC 2 cut(s) 125, 188
BspACI CCGC 1 cut(s) 108
BspANI GGCC 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 93
BssECI CCNNGG 4 cut(s) 91, 112, 118, 167
BssT1I CCWWGG 1 cut(s) 167
Bst2UI CCWGG 2 cut(s) 93, 119
Bst4CI ACNGT 2 cut(s) 127, 190
BstBAI YACGTR 1 cut(s) 136
BstDSI CCRYGG 1 cut(s) 112
BstNI CCWGG 2 cut(s) 93, 119
BstSCI CCNGG 2 cut(s) 91, 117
BstSLI GKGCMC 2 cut(s) 125, 188
BsuRI GGCC 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 112
BveI ACCTGC 1 cut(s) 93
CseI GACGC 1 cut(s) 75
Csp6I GTAC 2 cut(s) 153, 199
CviJI RGCY 1 cut(s) 117
CviKI_1 RGCY 1 cut(s) 117
CviQI GTAC 2 cut(s) 153, 199
EaeI YGGCCR 1 cut(s) 115
Eco130I CCWWGG 1 cut(s) 167
Eco72I CACGTG 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 91, 117
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
FaiI YATR 4 cut(s) 7, 19, 30, 32
FauI CCCGC 1 cut(s) 115
HaeIII GGCC 1 cut(s) 117
HgaI GACGC 1 cut(s) 75
HinfI GANTC 1 cut(s) 172
HphI GGTGA 2 cut(s) 136, 156
Hpy166II GTNNAC 3 cut(s) 65, 144, 186
Hpy8I GTNNAC 3 cut(s) 65, 144, 186
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 2 cut(s) 127, 190
HpyCH4IV ACGT 1 cut(s) 135
HpyCH4V TGCA 4 cut(s) 28, 57, 88, 186
HpySE526I ACGT 1 cut(s) 135
LpnPI CCDG 8 cut(s) 55, 78, 91, 98, 104, 105, 131, 206
MaeII ACGT 1 cut(s) 135
MhlI GDGCHC 2 cut(s) 125, 188
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 1 cut(s) 33
MluNI TGGCCA 1 cut(s) 117
MnlI CCTC 1 cut(s) 157
Mox20I TGGCCA 1 cut(s) 117
MroXI GAANNNNTTC 1 cut(s) 47
MscI TGGCCA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 93
Msp20I TGGCCA 1 cut(s) 117
MspR9I CCNGG 2 cut(s) 93, 119
Mva1269I GAATGC 1 cut(s) 49
MvaI CCWGG 2 cut(s) 93, 119
OliI CACNNNNGTG 1 cut(s) 93
PctI GAATGC 1 cut(s) 49
PdmI GAANNNNTTC 1 cut(s) 47
PfeI GAWTC 1 cut(s) 172
PmaCI CACGTG 1 cut(s) 136
PmlI CACGTG 1 cut(s) 136
Ppu21I YACGTR 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 91, 117
PspCI CACGTG 1 cut(s) 136
PspGI CCWGG 2 cut(s) 91, 117
RsaI GTAC 2 cut(s) 154, 200
RsaNI GTAC 2 cut(s) 153, 199
RseI CAYNNNNRTG 1 cut(s) 93
ScrFI CCNGG 2 cut(s) 93, 119
SduI GDGCHC 2 cut(s) 125, 188
SetI ASST 8 cut(s) 64, 87, 138, 149, 158, 169, 181, 185
SmiMI CAYNNNNRTG 1 cut(s) 93
Sse9I AATT 1 cut(s) 33
SsiI CCGC 1 cut(s) 108
StyD4I CCNGG 2 cut(s) 91, 117
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 2 cut(s) 127, 190
TaiI ACGT 1 cut(s) 138
TasI AATT 1 cut(s) 33
TfiI GAWTC 1 cut(s) 172
VneI GTGCAC 1 cut(s) 184
XmnI GAANNNNTTC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.