pycom05g06020
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0000513
Physical Location & Seq
Reverse (-)
7724295 .. 7725884
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g06020.3

Sequence Viewer

Length: 198 bp
ATGTCCGTTTTGACTTATAGTTGTGTTTGTGAGGTTCCCAGGAGCTTGGGAGTAGCTCGTTGGGTGAATTTGGACGTCAGGATCGTTGGATGTGGAGTTGGCCGAGTTTTGAAGATTTGGACAGGTGACACGTACCCCGAGGACGAGCGTGCACACGCGAGACAGGGGGGCTACGACCCTTCTACATACCAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

66

Amino Acids

7.28

Weight (kDa)

6.52

Isoelectric Point (pI)

39.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
AccII CGCG 1 cut(s) 158
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 1 cut(s) 67
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 1 cut(s) 134
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 1 cut(s) 112
AjnI CCWGG 1 cut(s) 38
AluBI AGCT 2 cut(s) 45, 56
AluI AGCT 2 cut(s) 45, 56
Alw21I GWGCWC 1 cut(s) 154
Alw26I GTCTC 1 cut(s) 154
Alw44I GTGCAC 1 cut(s) 150
AlwI GGATC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 1 cut(s) 100
ApaLI GTGCAC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 76, 137
AvaI CYCGRG 1 cut(s) 137
BaeGI GKGCMC 1 cut(s) 154
Bbv12I GWGCWC 1 cut(s) 154
BciT130I CCWGG 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 154
BfaI CTAG 1 cut(s) 196
Bme1390I CCNGG 1 cut(s) 40
BmeT110I CYCGRG 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 1 cut(s) 40
BsaAI YACGTR 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 38, 138
Bse1I ACTGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 40
BseDI CCNNGG 2 cut(s) 38, 138
BseGI GGATG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 154
Bsh1236I CGCG 1 cut(s) 158
BshFI GGCC 1 cut(s) 102
BsiHKAI GWGCWC 1 cut(s) 154
BsiHKCI CYCGRG 1 cut(s) 137
BsmAI GTCTC 1 cut(s) 154
BsnI GGCC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 154
Bsp143I GATC 1 cut(s) 81
BspANI GGCC 1 cut(s) 102
BspFNI CGCG 1 cut(s) 158
BspLI GGNNCC 1 cut(s) 36
BspPI GGATC 1 cut(s) 89
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 2 cut(s) 38, 138
BssMI GATC 1 cut(s) 81
BssNI GRCGYC 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 40
BstACI GRCGYC 1 cut(s) 75
BstBAI YACGTR 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 150
BstF5I GGATG 1 cut(s) 95
BstFNI CGCG 1 cut(s) 158
BstKTI GATC 1 cut(s) 84
BstMAI GTCTC 1 cut(s) 154
BstMBI GATC 1 cut(s) 81
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 1 cut(s) 38
BstSLI GKGCMC 1 cut(s) 154
BstUI CGCG 1 cut(s) 158
BstXI CCANNNNNNTGG 1 cut(s) 46
BsuRI GGCC 1 cut(s) 102
BtsCI GGATG 1 cut(s) 95
Cac8I GCNNGC 1 cut(s) 150
Csp6I GTAC 1 cut(s) 133
CviJI RGCY 4 cut(s) 45, 56, 102, 171
CviKI_1 RGCY 4 cut(s) 45, 56, 102, 171
CviQI GTAC 1 cut(s) 133
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
EaeI YGGCCR 1 cut(s) 100
Eco88I CYCGRG 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 38
FaiI YATR 2 cut(s) 18, 187
FokI GGATG 1 cut(s) 102
FspBI CTAG 1 cut(s) 196
HaeIII GGCC 1 cut(s) 102
Hin1I GRCGYC 1 cut(s) 75
HphI GGTGA 2 cut(s) 76, 137
Hpy166II GTNNAC 1 cut(s) 152
Hpy188III TCNNGA 1 cut(s) 79
Hpy8I GTNNAC 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 189
HpyCH4IV ACGT 2 cut(s) 75, 131
HpyCH4V TGCA 1 cut(s) 152
HpySE526I ACGT 2 cut(s) 75, 131
Hsp92I GRCGYC 1 cut(s) 75
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 5 cut(s) 25, 52, 64, 108, 149
MaeI CTAG 1 cut(s) 196
MaeII ACGT 2 cut(s) 75, 131
MaeIII GTNAC 1 cut(s) 125
MalI GATC 1 cut(s) 83
MboI GATC 1 cut(s) 81
MboII GAAGA 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 154
MluCI AATT 1 cut(s) 67
MmeI TCCRAC 1 cut(s) 67
MnlI CCTC 2 cut(s) 25, 133
MspR9I CCNGG 1 cut(s) 40
MvaI CCWGG 1 cut(s) 40
MvnI CGCG 1 cut(s) 158
NdeII GATC 1 cut(s) 81
NlaIV GGNNCC 1 cut(s) 36
NmeAIII GCCGAG 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 125
PcsI WCGNNNNNNNCGW 1 cut(s) 81
Ppu21I YACGTR 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 38
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 36
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
Sau3AI GATC 1 cut(s) 81
ScrFI CCNGG 1 cut(s) 40
SduI GDGCHC 1 cut(s) 154
SetI ASST 6 cut(s) 36, 47, 58, 78, 127, 134
Sse9I AATT 1 cut(s) 67
SspMI CTAG 1 cut(s) 196
StyD4I CCNGG 1 cut(s) 38
TaiI ACGT 2 cut(s) 78, 134
TasI AATT 1 cut(s) 67
TseFI GTSAC 1 cut(s) 125
Tsp45I GTSAC 1 cut(s) 125
VneI GTGCAC 1 cut(s) 150
XapI RAATTY 1 cut(s) 67
XspI CTAG 1 cut(s) 196
ZraI GACGTC 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.