MD12G1033900.v1.1

No description available

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
Physical Location & Seq
Forward (+)
3727821 .. 3729425
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1033900.v1.1.491

Sequence Viewer

Length: 342 bp
ATGATTCTTGGGAGATTTGGAATTCATTTCGTCTGCTATGTGAACATCACAGTCATTTATCAGTTGCTCTTGATGATTTTTGTTATGTTTCTGTATCCATGGTGGTTTTGTTTCTGGTGGTTCTGTTTCTGTATCCATGGTGTTTTTCAATGTGATTGGAGATTCAAAAGGATTTGGCTTCTCGGCCCTTCTACTTCTCATATACTCTCATCCCCTCTTATTTGTGCGGTTACGGTTAAGCCACGTCAACATTTTATATTACTATTGCTTTTTGTCTTATTATCTGTATACAAAAATCAATATAAAATGTTAACATGGCTTAATCGTGACAGCACAAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

114

Amino Acids

13.77

Weight (kDa)

9.5

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 288
AciI CCGC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 21
AgsI TTSAA 2 cut(s) 149, 166
AjiI CACGTC 1 cut(s) 245
AoxI GGCC 1 cut(s) 184
ApoI RAATTY 1 cut(s) 21
AspS9I GGNCC 1 cut(s) 185
BciVI GTATCC 2 cut(s) 105, 143
BfuI GTATCC 2 cut(s) 105, 143
BmgBI CACGTC 1 cut(s) 245
BmgT120I GGNCC 1 cut(s) 185
BsaJI CCNNGG 2 cut(s) 98, 136
BseDI CCNNGG 2 cut(s) 98, 136
BseGI GGATG 1 cut(s) 209
BshFI GGCC 1 cut(s) 186
BsnI GGCC 1 cut(s) 186
Bsp19I CCATGG 2 cut(s) 98, 136
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 186
BssECI CCNNGG 2 cut(s) 98, 136
BssNAI GTATAC 1 cut(s) 289
BssT1I CCWWGG 2 cut(s) 98, 136
Bst1107I GTATAC 1 cut(s) 289
Bst4CI ACNGT 2 cut(s) 52, 235
BstDSI CCRYGG 2 cut(s) 98, 136
BstF5I GGATG 1 cut(s) 209
BstZ17I GTATAC 1 cut(s) 289
BsuI GTATCC 2 cut(s) 105, 143
BsuRI GGCC 1 cut(s) 186
BtgI CCRYGG 2 cut(s) 98, 136
BtrI CACGTC 1 cut(s) 245
BtsCI GGATG 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 185
CviAII CATG 3 cut(s) 99, 137, 315
CviJI RGCY 4 cut(s) 178, 186, 241, 319
CviKI_1 RGCY 4 cut(s) 178, 186, 241, 319
Eco130I CCWWGG 2 cut(s) 98, 136
EcoRI GAATTC 1 cut(s) 21
EcoT14I CCWWGG 2 cut(s) 98, 136
ErhI CCWWGG 2 cut(s) 98, 136
FaeI CATG 3 cut(s) 102, 140, 318
FatI CATG 3 cut(s) 98, 136, 314
FblI GTMKAC 1 cut(s) 288
FokI GGATG 1 cut(s) 196
HaeIII GGCC 1 cut(s) 186
Hin1II CATG 3 cut(s) 102, 140, 318
HincII GTYRAC 2 cut(s) 248, 312
HindII GTYRAC 2 cut(s) 248, 312
HinfI GANTC 2 cut(s) 4, 162
HpaI GTTAAC 1 cut(s) 312
Hpy166II GTNNAC 4 cut(s) 43, 248, 289, 312
Hpy188III TCNNGA 2 cut(s) 70, 326
Hpy8I GTNNAC 4 cut(s) 43, 248, 289, 312
HpyAV CCTTC 1 cut(s) 198
HpyCH4III ACNGT 2 cut(s) 52, 235
HpyCH4IV ACGT 1 cut(s) 244
HpySE526I ACGT 1 cut(s) 244
Hsp92II CATG 3 cut(s) 102, 140, 318
KspAI GTTAAC 1 cut(s) 312
LpnPI CCDG 1 cut(s) 100
MaeII ACGT 1 cut(s) 244
MaeIII GTNAC 2 cut(s) 229, 326
MluCI AATT 1 cut(s) 21
MnlI CCTC 1 cut(s) 225
MseI TTAA 3 cut(s) 237, 311, 321
NcoI CCATGG 2 cut(s) 98, 136
NlaIII CATG 3 cut(s) 102, 140, 318
NmeAIII GCCGAG 1 cut(s) 162
NmuCI GTSAC 1 cut(s) 326
PfeI GAWTC 2 cut(s) 4, 162
PspPI GGNCC 1 cut(s) 185
SaqAI TTAA 3 cut(s) 237, 311, 321
Sau96I GGNCC 1 cut(s) 185
SetI ASST 1 cut(s) 247
SgeI CNNG 9 cut(s) 20, 82, 111, 127, 149, 194, 255, 327, 338
Sse9I AATT 1 cut(s) 21
SsiI CCGC 1 cut(s) 227
StyI CCWWGG 2 cut(s) 98, 136
TaaI ACNGT 2 cut(s) 52, 235
TaiI ACGT 1 cut(s) 247
TasI AATT 1 cut(s) 21
TfiI GAWTC 2 cut(s) 4, 162
Tru1I TTAA 3 cut(s) 237, 311, 321
Tru9I TTAA 3 cut(s) 237, 311, 321
TseFI GTSAC 1 cut(s) 326
Tsp45I GTSAC 1 cut(s) 326
TspDTI ATGAA 1 cut(s) 14
XapI RAATTY 1 cut(s) 21
XmiI GTMKAC 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.