pycom15g17240

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
12161373 .. 12162317
945 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g17240.1

Sequence Viewer

Length: 237 bp
ATGAGGCTCGGGGTGGTTCATTTGAAGGTTTTGAACGTCGGGATCGTTAGTTGCAGGTTTAGCCGGAGTTGGTGGTGTTTTCCCGGCGAGATTCCGTGGGTTTTAGTGCTTGAAAGTGTTGTTTCGCATATAGGTGAGACCTATCCCGAGGATGAGCGCGGTCACTCGAGGCAAGGGGGTTACGACCCTTCTACATACCATGCTCTCGCCCAGAGTTGGGCACAGTCCTTCATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

79

Amino Acids

8.89

Weight (kDa)

6.38

Isoelectric Point (pI)

52.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 45
AccII CGCG 1 cut(s) 159
AciI CCGC 1 cut(s) 159
AclWI GGATC 1 cut(s) 50
AfiI CCNNNNNNNGG 2 cut(s) 216, 217
AgsI TTSAA 3 cut(s) 25, 34, 113
Alw26I GTCTC 1 cut(s) 131
AlwI GGATC 1 cut(s) 50
Ama87I CYCGRG 3 cut(s) 8, 146, 166
AspLEI GCGC 1 cut(s) 159
AsuC2I CCSGG 1 cut(s) 84
AsuHPI GGTGA 1 cut(s) 146
AvaI CYCGRG 3 cut(s) 8, 146, 166
BaeGI GKGCMC 1 cut(s) 223
BcnI CCSGG 1 cut(s) 84
BcoDI GTCTC 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 45
Bme1390I CCNGG 1 cut(s) 84
BmeT110I CYCGRG 3 cut(s) 8, 146, 166
BmrFI CCNGG 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 84
BsaI GGTCTC 1 cut(s) 131
BsaJI CCNNGG 2 cut(s) 95, 147
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 217
BseDI CCNNGG 2 cut(s) 95, 147
BseGI GGATG 1 cut(s) 157
BseLI CCNNNNNNNGG 2 cut(s) 216, 217
BseSI GKGCMC 1 cut(s) 223
Bsh1236I CGCG 1 cut(s) 159
BsiHKCI CYCGRG 3 cut(s) 8, 146, 166
BsiSI CCGG 2 cut(s) 64, 84
BslI CCNNNNNNNGG 2 cut(s) 216, 217
BsmAI GTCTC 1 cut(s) 131
Bso31I GGTCTC 1 cut(s) 131
BsoBI CYCGRG 3 cut(s) 8, 146, 166
Bsp1286I GDGCHC 1 cut(s) 223
Bsp143I GATC 1 cut(s) 42
BspACI CCGC 1 cut(s) 159
BspFNI CGCG 1 cut(s) 159
BspMI ACCTGC 1 cut(s) 45
BspPI GGATC 1 cut(s) 50
BspTNI GGTCTC 1 cut(s) 131
BssECI CCNNGG 2 cut(s) 95, 147
BssMI GATC 1 cut(s) 42
Bst4CI ACNGT 1 cut(s) 225
BstDSI CCRYGG 1 cut(s) 95
BstF5I GGATG 1 cut(s) 157
BstFNI CGCG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 159
BstKTI GATC 1 cut(s) 45
BstMAI GTCTC 1 cut(s) 131
BstMBI GATC 1 cut(s) 42
BstMWI GCNNNNNNNGC 1 cut(s) 60
BstSCI CCNGG 1 cut(s) 82
BstSLI GKGCMC 1 cut(s) 223
BstUI CGCG 1 cut(s) 159
BtgI CCRYGG 1 cut(s) 95
BtsCI GGATG 1 cut(s) 157
BveI ACCTGC 1 cut(s) 45
CfoI GCGC 1 cut(s) 159
CviAII CATG 2 cut(s) 200, 232
CviJI RGCY 2 cut(s) 7, 63
CviKI_1 RGCY 2 cut(s) 7, 63
DpnI GATC 1 cut(s) 44
DpnII GATC 1 cut(s) 42
Eco31I GGTCTC 1 cut(s) 131
Eco88I CYCGRG 3 cut(s) 8, 146, 166
FaeI CATG 2 cut(s) 203, 235
FaiI YATR 5 cut(s) 129, 131, 196, 201, 233
FatI CATG 2 cut(s) 199, 231
FokI GGATG 1 cut(s) 164
GlaI GCGC 1 cut(s) 158
HapII CCGG 2 cut(s) 64, 84
HhaI GCGC 1 cut(s) 159
Hin1II CATG 2 cut(s) 203, 235
Hin6I GCGC 1 cut(s) 157
HinP1I GCGC 1 cut(s) 157
HinfI GANTC 1 cut(s) 91
HpaII CCGG 2 cut(s) 64, 84
HphI GGTGA 1 cut(s) 146
Hpy188III TCNNGA 2 cut(s) 40, 146
Hpy99I CGWCG 1 cut(s) 41
HpyAV CCTTC 2 cut(s) 19, 198
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 1 cut(s) 60
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 2 cut(s) 203, 235
HspAI GCGC 1 cut(s) 157
Kzo9I GATC 1 cut(s) 42
LpnPI CCDG 4 cut(s) 40, 77, 97, 224
MaeII ACGT 1 cut(s) 36
MaeIII GTNAC 2 cut(s) 161, 179
MalI GATC 1 cut(s) 44
MboI GATC 1 cut(s) 42
MhlI GDGCHC 1 cut(s) 223
MnlI CCTC 2 cut(s) 142, 162
MslI CAYNNNNRTG 1 cut(s) 132
MspI CCGG 2 cut(s) 64, 84
MspR9I CCNGG 1 cut(s) 84
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 60
NciI CCSGG 1 cut(s) 84
NdeII GATC 1 cut(s) 42
NlaIII CATG 2 cut(s) 203, 235
NmuCI GTSAC 1 cut(s) 161
PaeR7I CTCGAG 1 cut(s) 166
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PfeI GAWTC 1 cut(s) 91
PspXI VCTCGAGB 1 cut(s) 166
RseI CAYNNNNRTG 1 cut(s) 132
Sau3AI GATC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 84
SduI GDGCHC 1 cut(s) 223
SetI ASST 5 cut(s) 30, 39, 59, 136, 143
Sfr274I CTCGAG 1 cut(s) 166
SlaI CTCGAG 1 cut(s) 166
SmiMI CAYNNNNRTG 1 cut(s) 132
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
SsiI CCGC 1 cut(s) 159
StyD4I CCNGG 1 cut(s) 82
TaaI ACNGT 1 cut(s) 225
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 167
TfiI GAWTC 1 cut(s) 91
TseFI GTSAC 1 cut(s) 161
Tsp45I GTSAC 1 cut(s) 161
TspDTI ATGAA 2 cut(s) 8, 220
TspGWI ACGGA 1 cut(s) 84
XhoI CTCGAG 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.