pycom10g03920

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
Physical Location & Seq
Forward (+)
4206841 .. 4207461
621 bp
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UTR
Exon/CDS
Intron
pycom10g03920.3

Sequence Viewer

Length: 447 bp
ATGCTCTTACATGAGCATATATTATTTTATGAGGTAATTAGATTCACATCATTCTTTTTCGATCTATTTGATTTTAAATATATTCCTTTAGTGTTAAAAATGTTACAATTAGTATATTTATATTTATGGCTAAATTTTTCATCATACATTTTTATTTTTAGTTTGTACCTATTTTTAATTTGCAAATATTTTTTAATTTGTACGAATTTTCTTTTCATTTTTAATTTGTACCCATATATTAGTTTCTTTTTGTGCCCATATTTTTTAAAGTTTTATTTGTCAATGATAGAAAAATTACGTATGGTATATTTATGTTTTATGCCTAAACTTTTTGCAACATTTTTTTTAATTTGTAGTATTTTCTTTTTAGTTTTATTTTGTACCCATGTATTAATTTCTTTTAGCGCCTATATTTTTAAAAATTCATTTGTACTCATAATTTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

18.32

Weight (kDa)

8.71

Isoelectric Point (pI)

32.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 3 cut(s) 133, 205, 421
AfaI GTAC 5 cut(s) 167, 202, 230, 382, 432
ApoI RAATTY 3 cut(s) 133, 205, 421
AseI ATTAAT 1 cut(s) 392
AspLEI GCGC 1 cut(s) 407
BaeGI GKGCMC 1 cut(s) 257
BfoI RGCGCY 1 cut(s) 408
BsaAI YACGTR 1 cut(s) 299
BsaBI GATNNNNATC 1 cut(s) 46
Bse8I GATNNNNATC 1 cut(s) 46
BseJI GATNNNNATC 1 cut(s) 46
BseSI GKGCMC 1 cut(s) 257
Bsp1286I GDGCHC 1 cut(s) 257
Bsp143I GATC 1 cut(s) 61
BssMI GATC 1 cut(s) 61
BstBAI YACGTR 1 cut(s) 299
BstH2I RGCGCY 1 cut(s) 408
BstHHI GCGC 1 cut(s) 407
BstKTI GATC 1 cut(s) 64
BstMBI GATC 1 cut(s) 61
BstSLI GKGCMC 1 cut(s) 257
BstSNI TACGTA 1 cut(s) 299
CfoI GCGC 1 cut(s) 407
Csp6I GTAC 5 cut(s) 166, 201, 229, 381, 431
CviAII CATG 2 cut(s) 11, 386
CviJI RGCY 1 cut(s) 130
CviKI_1 RGCY 1 cut(s) 130
CviQI GTAC 5 cut(s) 166, 201, 229, 381, 431
DpnI GATC 1 cut(s) 63
DpnII GATC 1 cut(s) 61
DraI TTTAAA 3 cut(s) 76, 267, 418
Eco105I TACGTA 1 cut(s) 299
FaeI CATG 2 cut(s) 14, 389
FatI CATG 2 cut(s) 10, 385
GlaI GCGC 1 cut(s) 406
HaeII RGCGCY 1 cut(s) 408
HhaI GCGC 1 cut(s) 407
Hin1II CATG 2 cut(s) 14, 389
Hin6I GCGC 1 cut(s) 405
HinP1I GCGC 1 cut(s) 405
HinfI GANTC 1 cut(s) 42
HpyCH4IV ACGT 1 cut(s) 298
HpyCH4V TGCA 2 cut(s) 183, 335
HpySE526I ACGT 1 cut(s) 298
Hsp92II CATG 2 cut(s) 14, 389
HspAI GCGC 1 cut(s) 405
Kzo9I GATC 1 cut(s) 61
MaeII ACGT 1 cut(s) 298
MaeIII GTNAC 1 cut(s) 102
MalI GATC 1 cut(s) 63
MboI GATC 1 cut(s) 61
MhlI GDGCHC 1 cut(s) 257
MnlI CCTC 1 cut(s) 25
NdeII GATC 1 cut(s) 61
NlaIII CATG 2 cut(s) 14, 389
PfeI GAWTC 1 cut(s) 42
Ppu21I YACGTR 1 cut(s) 299
PshBI ATTAAT 1 cut(s) 392
RsaI GTAC 5 cut(s) 167, 202, 230, 382, 432
RsaNI GTAC 5 cut(s) 166, 201, 229, 381, 431
Sau3AI GATC 1 cut(s) 61
SduI GDGCHC 1 cut(s) 257
SetI ASST 3 cut(s) 36, 171, 301
SgeI CNNG 2 cut(s) 23, 398
SnaBI TACGTA 1 cut(s) 299
SspI AATATT 1 cut(s) 188
TaiI ACGT 1 cut(s) 301
TaqI TCGA 1 cut(s) 60
TatI WGTACW 1 cut(s) 430
TfiI GAWTC 1 cut(s) 42
TspDTI ATGAA 3 cut(s) 129, 205, 414
VspI ATTAAT 1 cut(s) 392
XapI RAATTY 3 cut(s) 133, 205, 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.