pycom16g26060

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000513
Physical Location & Seq
Reverse (-)
28326943 .. 28327853
911 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g26060.1

Sequence Viewer

Length: 273 bp
ATGTTTTGGGCCACACACACTCTCCCACACTCCACACCATTTTCTCCCTATTCTTGCACCCTGTCCCGACAAACCTCCACAGATCGAAGAAACAAAGTACATATCCATGCTCGTGAGGCTCGTAGGAGTCCAACCATACCCATTTCAGTTCAAGCTTGTAGGAAGCTTGGAGAGGTCCCTAGGAGGCTCGGGGTGGTTCGTTTGAAGGTTTTGGACGTCGGGATCACGAGTTTCGAGGTTGGCCGGAGTTGGGGTGATTTTCCAGTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.2

Weight (kDa)

11.12

Isoelectric Point (pI)

71.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 219
AclWI GGATC 1 cut(s) 230
AcoI YGGCCR 1 cut(s) 241
AcyI GRCGYC 1 cut(s) 216
AfaI GTAC 1 cut(s) 99
AfiI CCNNNNNNNGG 1 cut(s) 250
AgsI TTSAA 2 cut(s) 152, 205
AluBI AGCT 2 cut(s) 155, 166
AluI AGCT 2 cut(s) 155, 166
AlwI GGATC 1 cut(s) 230
Ama87I CYCGRG 1 cut(s) 188
AoxI GGCC 2 cut(s) 9, 241
AspA2I CCTAGG 1 cut(s) 179
AspS9I GGNCC 2 cut(s) 9, 175
AsuHPI GGTGA 1 cut(s) 266
AvaI CYCGRG 1 cut(s) 188
AvaII GGWCC 1 cut(s) 175
AvrII CCTAGG 1 cut(s) 179
BauI CACGAG 2 cut(s) 111, 226
BfaI CTAG 1 cut(s) 180
BlnI CCTAGG 1 cut(s) 179
Bme18I GGWCC 1 cut(s) 175
BmeT110I CYCGRG 1 cut(s) 188
BmgT120I GGNCC 2 cut(s) 9, 175
BmiI GGNNCC 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 1 cut(s) 179
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 238, 268
Bsc4I CCNNNNNNNGG 1 cut(s) 250
Bse1I ACTGG 1 cut(s) 263
BseDI CCNNGG 1 cut(s) 179
BseLI CCNNNNNNNGG 1 cut(s) 250
BseNI ACTGG 1 cut(s) 263
BshFI GGCC 2 cut(s) 11, 243
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 1 cut(s) 244
BslFI GGGAC 2 cut(s) 49, 161
BslI CCNNNNNNNGG 1 cut(s) 250
BsmFI GGGAC 2 cut(s) 49, 161
BsnI GGCC 2 cut(s) 11, 243
BsoBI CYCGRG 1 cut(s) 188
Bsp143I GATC 2 cut(s) 82, 222
BspANI GGCC 2 cut(s) 11, 243
BspLI GGNNCC 1 cut(s) 177
BspPI GGATC 1 cut(s) 230
BsrI ACTGG 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 2 cut(s) 82, 222
BssNI GRCGYC 1 cut(s) 216
BssSI CACGAG 2 cut(s) 111, 226
BssT1I CCWWGG 1 cut(s) 179
Bst2BI CACGAG 2 cut(s) 111, 226
BstACI GRCGYC 1 cut(s) 216
BstKTI GATC 2 cut(s) 85, 225
BstMBI GATC 2 cut(s) 82, 222
BstMWI GCNNNNNNNGC 1 cut(s) 116
BsuRI GGCC 2 cut(s) 11, 243
Cfr13I GGNCC 2 cut(s) 9, 175
Csp6I GTAC 1 cut(s) 98
CviAII CATG 1 cut(s) 107
CviJI RGCY 6 cut(s) 11, 119, 155, 166, 187, 243
CviKI_1 RGCY 6 cut(s) 11, 119, 155, 166, 187, 243
CviQI GTAC 1 cut(s) 98
DpnI GATC 2 cut(s) 84, 224
DpnII GATC 2 cut(s) 82, 222
EaeI YGGCCR 1 cut(s) 241
Eco130I CCWWGG 1 cut(s) 179
Eco47I GGWCC 1 cut(s) 175
Eco88I CYCGRG 1 cut(s) 188
EcoO109I RGGNCCY 1 cut(s) 175
EcoT14I CCWWGG 1 cut(s) 179
ErhI CCWWGG 1 cut(s) 179
FaeI CATG 1 cut(s) 110
FaiI YATR 3 cut(s) 102, 108, 137
FaqI GGGAC 2 cut(s) 49, 161
FatI CATG 1 cut(s) 106
FspBI CTAG 1 cut(s) 180
HaeIII GGCC 2 cut(s) 11, 243
HapII CCGG 1 cut(s) 244
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 1 cut(s) 110
HindIII AAGCTT 2 cut(s) 153, 164
HinfI GANTC 1 cut(s) 127
HpaII CCGG 1 cut(s) 244
HphI GGTGA 1 cut(s) 266
Hpy188III TCNNGA 4 cut(s) 66, 113, 220, 226
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 1 cut(s) 199
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 1 cut(s) 57
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 216
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 1 cut(s) 110
Kzo9I GATC 2 cut(s) 82, 222
LpnPI CCDG 2 cut(s) 74, 257
MaeI CTAG 1 cut(s) 180
MaeII ACGT 1 cut(s) 216
MalI GATC 2 cut(s) 84, 224
MboI GATC 2 cut(s) 82, 222
MboII GAAGA 1 cut(s) 99
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 1 cut(s) 155
MnlI CCTC 5 cut(s) 85, 109, 166, 177, 229
MslI CAYNNNNRTG 2 cut(s) 105, 111
MspI CCGG 1 cut(s) 244
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeII GATC 2 cut(s) 82, 222
NlaIII CATG 1 cut(s) 110
NlaIV GGNNCC 1 cut(s) 177
PcsI WCGNNNNNNNCGW 1 cut(s) 118
PleI GAGTC 1 cut(s) 135
PpsI GAGTC 1 cut(s) 135
PpuMI RGGWCCY 1 cut(s) 175
Psp5II RGGWCCY 1 cut(s) 175
PspN4I GGNNCC 1 cut(s) 177
PspPI GGNCC 2 cut(s) 9, 175
PspPPI RGGWCCY 1 cut(s) 175
RsaI GTAC 1 cut(s) 99
RsaNI GTAC 1 cut(s) 98
RseI CAYNNNNRTG 2 cut(s) 105, 111
Sau3AI GATC 2 cut(s) 82, 222
Sau96I GGNCC 2 cut(s) 9, 175
SchI GAGTC 1 cut(s) 136
SetI ASST 7 cut(s) 77, 157, 168, 177, 210, 219, 240
SinI GGWCC 1 cut(s) 175
SmiMI CAYNNNNRTG 2 cut(s) 105, 111
SspMI CTAG 1 cut(s) 180
StyI CCWWGG 1 cut(s) 179
TaiI ACGT 1 cut(s) 219
TaqI TCGA 2 cut(s) 85, 234
TatI WGTACW 1 cut(s) 97
VpaK11BI GGWCC 1 cut(s) 175
XmaJI CCTAGG 1 cut(s) 179
XspI CTAG 1 cut(s) 180
ZraI GACGTC 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.