pycom17g03930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0000513
Physical Location & Seq
Reverse (-)
2687073 .. 2688085
1013 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g03930.3

Sequence Viewer

Length: 462 bp
ATGATTTTTCGTTGTGTAGTTGTTCTTTTTGGCTTGGTGTGGCTAGTTTTGCACCACACACTCTTCCCTACACTCACCCTCACTGTTTCCCCTATCCCTGCACCTGTCCCGAGCTCCCTTTCCTTTCCCATTTTCCATTCCAACGTACGGACACACACTCAAACACATCAAACCTTCACATATCGAAGAAACAAAGTACATATCTATGCTCGTGAGGCTCGTAGGAGTCCAACCGTACCCATTTCAGCTTGTAGGAAGCTTGGTGAGGTCCCTAGGAGGCTCGGGGTGGTTCGTTTGAAGGTTTTGGACGTCGGGATAGTGAGTTTCGAGGTTGGCCGGAGTTGGGGTGATTTTCCAAGTGAGATTTCATGGATTTTAGCACTTGAAAGTGGTGAATCCTATCTCGAGAACGAGCGTGGTCACTCGAGGCAGGGGGGTTACGACCCTTCCACATACCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.37

Weight (kDa)

9.82

Isoelectric Point (pI)

59.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 312
AcoI YGGCCR 1 cut(s) 334
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 3 cut(s) 147, 198, 237
AfiI CCNNNNNNNGG 2 cut(s) 147, 343
AgsI TTSAA 2 cut(s) 298, 386
AjuI GAANNNNNNNTTGG 2 cut(s) 349, 381
AluBI AGCT 3 cut(s) 114, 248, 259
AluI AGCT 3 cut(s) 114, 248, 259
Alw21I GWGCWC 1 cut(s) 116
Ama87I CYCGRG 4 cut(s) 109, 281, 404, 424
AoxI GGCC 1 cut(s) 334
AspA2I CCTAGG 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 268
AsuHPI GGTGA 4 cut(s) 67, 275, 359, 404
AvaI CYCGRG 4 cut(s) 109, 281, 404, 424
AvaII GGWCC 1 cut(s) 268
AvrII CCTAGG 1 cut(s) 272
BanII GRGCYC 1 cut(s) 116
BauI CACGAG 1 cut(s) 210
Bbv12I GWGCWC 1 cut(s) 116
BfaI CTAG 2 cut(s) 44, 273
BlnI CCTAGG 1 cut(s) 272
Bme18I GGWCC 1 cut(s) 268
BmeT110I CYCGRG 4 cut(s) 109, 281, 404, 424
BmgT120I GGNCC 1 cut(s) 268
BmiI GGNNCC 1 cut(s) 270
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 272
BsaXI ACNNNNNCTCC 2 cut(s) 331, 361
Bsc4I CCNNNNNNNGG 2 cut(s) 147, 343
Bse1I ACTGG 1 cut(s) 457
BseDI CCNNGG 1 cut(s) 272
BseLI CCNNNNNNNGG 2 cut(s) 147, 343
BseNI ACTGG 1 cut(s) 457
BsgI GTGCAG 1 cut(s) 84
BshFI GGCC 1 cut(s) 336
BsiHKAI GWGCWC 1 cut(s) 116
BsiHKCI CYCGRG 4 cut(s) 109, 281, 404, 424
BsiSI CCGG 1 cut(s) 337
BsiWI CGTACG 1 cut(s) 145
BslFI GGGAC 2 cut(s) 92, 254
BslI CCNNNNNNNGG 2 cut(s) 147, 343
BsmFI GGGAC 2 cut(s) 92, 254
BsnI GGCC 1 cut(s) 336
BsoBI CYCGRG 4 cut(s) 109, 281, 404, 424
Bsp1286I GDGCHC 1 cut(s) 116
BspANI GGCC 1 cut(s) 336
BspLI GGNNCC 1 cut(s) 270
BsrI ACTGG 1 cut(s) 457
BssECI CCNNGG 1 cut(s) 272
BssNI GRCGYC 1 cut(s) 309
BssSI CACGAG 1 cut(s) 210
BssT1I CCWWGG 1 cut(s) 272
Bst2BI CACGAG 1 cut(s) 210
Bst4CI ACNGT 2 cut(s) 85, 235
Bst6I CTCTTC 1 cut(s) 68
BstACI GRCGYC 1 cut(s) 309
BstMWI GCNNNNNNNGC 2 cut(s) 49, 215
BsuRI GGCC 1 cut(s) 336
BtsIMutI CAGTG 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 268
Csp6I GTAC 3 cut(s) 146, 197, 236
CviAII CATG 1 cut(s) 369
CviJI RGCY 8 cut(s) 33, 43, 114, 218, 248, 259, 280, 336
CviKI_1 RGCY 8 cut(s) 33, 43, 114, 218, 248, 259, 280, 336
CviQI GTAC 3 cut(s) 146, 197, 236
EaeI YGGCCR 1 cut(s) 334
Eam1104I CTCTTC 1 cut(s) 68
EarI CTCTTC 1 cut(s) 68
Ecl136II GAGCTC 1 cut(s) 114
Eco130I CCWWGG 1 cut(s) 272
Eco24I GRGCYC 1 cut(s) 116
Eco47I GGWCC 1 cut(s) 268
Eco53kI GAGCTC 1 cut(s) 114
Eco88I CYCGRG 4 cut(s) 109, 281, 404, 424
EcoICRI GAGCTC 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 268
EcoT14I CCWWGG 1 cut(s) 272
EcoT38I GRGCYC 1 cut(s) 116
ErhI CCWWGG 1 cut(s) 272
FaeI CATG 1 cut(s) 372
FaiI YATR 5 cut(s) 181, 201, 207, 370, 454
FaqI GGGAC 2 cut(s) 92, 254
FatI CATG 1 cut(s) 368
FriOI GRGCYC 1 cut(s) 116
FspBI CTAG 2 cut(s) 44, 273
HaeIII GGCC 1 cut(s) 336
HapII CCGG 1 cut(s) 337
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 1 cut(s) 372
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 2 cut(s) 226, 395
HpaII CCGG 1 cut(s) 337
HphI GGTGA 4 cut(s) 67, 275, 359, 404
Hpy188III TCNNGA 5 cut(s) 109, 212, 313, 404, 406
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 3 cut(s) 184, 292, 456
HpyCH4III ACNGT 2 cut(s) 85, 235
HpyCH4IV ACGT 2 cut(s) 144, 309
HpyCH4V TGCA 2 cut(s) 52, 101
HpyF10VI GCNNNNNNNGC 2 cut(s) 49, 215
HpySE526I ACGT 2 cut(s) 144, 309
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 1 cut(s) 372
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 4 cut(s) 111, 117, 350, 416
MaeI CTAG 2 cut(s) 44, 273
MaeII ACGT 2 cut(s) 144, 309
MaeIII GTNAC 2 cut(s) 419, 437
MboII GAAGA 2 cut(s) 55, 198
MhlI GDGCHC 1 cut(s) 116
MlyI GAGTC 1 cut(s) 235
MmeI TCCRAC 2 cut(s) 165, 254
MnlI CCTC 6 cut(s) 89, 208, 259, 270, 322, 420
MslI CAYNNNNRTG 2 cut(s) 204, 457
MspI CCGG 1 cut(s) 337
MwoI GCNNNNNNNGC 2 cut(s) 49, 215
NlaIII CATG 1 cut(s) 372
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 1 cut(s) 419
PaeR7I CTCGAG 2 cut(s) 404, 424
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PfeI GAWTC 1 cut(s) 395
Pfl23II CGTACG 1 cut(s) 145
PleI GAGTC 1 cut(s) 234
PpsI GAGTC 1 cut(s) 234
PpuMI RGGWCCY 1 cut(s) 268
Psp124BI GAGCTC 1 cut(s) 116
Psp5II RGGWCCY 1 cut(s) 268
PspLI CGTACG 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 268
PspPPI RGGWCCY 1 cut(s) 268
PspXI VCTCGAGB 1 cut(s) 424
RsaI GTAC 3 cut(s) 147, 198, 237
RsaNI GTAC 3 cut(s) 146, 197, 236
RseI CAYNNNNRTG 2 cut(s) 204, 457
SacI GAGCTC 1 cut(s) 116
Sau96I GGNCC 1 cut(s) 268
SchI GAGTC 1 cut(s) 235
SduI GDGCHC 1 cut(s) 116
Sfr274I CTCGAG 2 cut(s) 404, 424
SinI GGWCC 1 cut(s) 268
SlaI CTCGAG 2 cut(s) 404, 424
SmiMI CAYNNNNRTG 2 cut(s) 204, 457
SmlI CTYRAG 2 cut(s) 404, 424
SmoI CTYRAG 2 cut(s) 404, 424
SspMI CTAG 2 cut(s) 44, 273
SstI GAGCTC 1 cut(s) 116
StyI CCWWGG 1 cut(s) 272
TaaI ACNGT 2 cut(s) 85, 235
TaiI ACGT 2 cut(s) 147, 312
TaqI TCGA 4 cut(s) 184, 327, 405, 425
TatI WGTACW 1 cut(s) 196
TfiI GAWTC 1 cut(s) 395
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 1 cut(s) 419
Tsp45I GTSAC 1 cut(s) 419
TspDTI ATGAA 1 cut(s) 357
TspGWI ACGGA 1 cut(s) 163
TspRI CASTG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 268
XhoI CTCGAG 2 cut(s) 404, 424
XmaJI CCTAGG 1 cut(s) 272
XspI CTAG 2 cut(s) 44, 273
ZraI GACGTC 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.