pycom03g21130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0000513
Physical Location & Seq
Forward (+)
21439514 .. 21441069
1556 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g21130.3

Sequence Viewer

Length: 198 bp
ATGGCAGATTTGTGTATTGTTCATCTTGGTGGTGTCACGAGGAGCCTAGGAGTACTTCGTTGGACGAATTTGGACGTCGGGATAGCCTGGTTTGAAGTTGGCCGGTTTTCGAGTTTGGAGACAGGTGACACGTACCCCGAGGACGAGCGTGCGCACTCAAGGCAGGGGGGCTACGACCCTTCCACTTACCAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

66

Amino Acids

7.28

Weight (kDa)

4.78

Isoelectric Point (pI)

37.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 78
Acc16I TGCGCA 1 cut(s) 153
AcoI YGGCCR 1 cut(s) 100
AcsI RAATTY 1 cut(s) 67
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 2 cut(s) 54, 134
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 1 cut(s) 95
AjnI CCWGG 1 cut(s) 86
Alw26I GTCTC 1 cut(s) 113
Ama87I CYCGRG 1 cut(s) 137
AoxI GGCC 1 cut(s) 100
ApoI RAATTY 1 cut(s) 67
AspA2I CCTAGG 1 cut(s) 46
AspLEI GCGC 1 cut(s) 154
AsuHPI GGTGA 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 137
AvrII CCTAGG 1 cut(s) 46
BauI CACGAG 1 cut(s) 37
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 1 cut(s) 113
BfaI CTAG 2 cut(s) 47, 196
BlnI CCTAGG 1 cut(s) 46
BmcAI AGTACT 1 cut(s) 54
Bme1390I CCNGG 1 cut(s) 88
BmeT110I CYCGRG 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 44
BmrFI CCNGG 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 142
BsaAI YACGTR 1 cut(s) 132
BsaHI GRCGYC 1 cut(s) 75
BsaJI CCNNGG 2 cut(s) 46, 138
Bse118I RCCGGY 1 cut(s) 102
Bse1I ACTGG 1 cut(s) 190
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 2 cut(s) 46, 138
BseNI ACTGG 1 cut(s) 190
BseRI GAGGAG 1 cut(s) 55
BshFI GGCC 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 137
BsiSI CCGG 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 113
BsnI GGCC 1 cut(s) 102
BsoBI CYCGRG 1 cut(s) 137
BspANI GGCC 1 cut(s) 102
BspLI GGNNCC 1 cut(s) 44
BsrFI RCCGGY 1 cut(s) 102
BsrI ACTGG 1 cut(s) 190
BssAI RCCGGY 1 cut(s) 102
BssECI CCNNGG 2 cut(s) 46, 138
BssNI GRCGYC 1 cut(s) 75
BssSI CACGAG 1 cut(s) 37
BssT1I CCWWGG 1 cut(s) 46
Bst2BI CACGAG 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 88
BstACI GRCGYC 1 cut(s) 75
BstBAI YACGTR 1 cut(s) 132
BstC8I GCNNGC 1 cut(s) 150
BstHHI GCGC 1 cut(s) 154
BstMAI GTCTC 1 cut(s) 113
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BsuRI GGCC 1 cut(s) 102
Cac8I GCNNGC 1 cut(s) 150
CfoI GCGC 1 cut(s) 154
Cfr10I RCCGGY 1 cut(s) 102
Csp6I GTAC 2 cut(s) 53, 133
CviJI RGCY 4 cut(s) 45, 86, 102, 171
CviKI_1 RGCY 4 cut(s) 45, 86, 102, 171
CviQI GTAC 2 cut(s) 53, 133
EaeI YGGCCR 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 46
Eco88I CYCGRG 1 cut(s) 137
EcoRII CCWGG 1 cut(s) 86
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FspAI RTGCGCAY 1 cut(s) 153
FspBI CTAG 2 cut(s) 47, 196
FspI TGCGCA 1 cut(s) 153
GlaI GCGC 1 cut(s) 153
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 103
HhaI GCGC 1 cut(s) 154
Hin1I GRCGYC 1 cut(s) 75
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HpaII CCGG 1 cut(s) 103
HphI GGTGA 1 cut(s) 137
Hpy188III TCNNGA 2 cut(s) 37, 79
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 189
HpyCH4IV ACGT 2 cut(s) 75, 131
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpySE526I ACGT 2 cut(s) 75, 131
Hsp92I GRCGYC 1 cut(s) 75
HspAI GCGC 1 cut(s) 152
LmnI GCTCC 1 cut(s) 42
LpnPI CCDG 5 cut(s) 73, 100, 108, 116, 149
MaeI CTAG 2 cut(s) 47, 196
MaeII ACGT 2 cut(s) 75, 131
MaeIII GTNAC 2 cut(s) 34, 125
MluCI AATT 1 cut(s) 67
MmeI TCCRAC 1 cut(s) 41
MnlI CCTC 2 cut(s) 33, 133
MslI CAYNNNNRTG 1 cut(s) 27
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
MwoI GCNNNNNNNGC 1 cut(s) 160
NlaIV GGNNCC 1 cut(s) 44
NmuCI GTSAC 2 cut(s) 34, 125
NsbI TGCGCA 1 cut(s) 153
Ppu21I YACGTR 1 cut(s) 132
Psp6I CCWGG 1 cut(s) 86
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 1 cut(s) 44
RsaI GTAC 2 cut(s) 54, 134
RsaNI GTAC 2 cut(s) 53, 133
RseI CAYNNNNRTG 1 cut(s) 27
ScaI AGTACT 1 cut(s) 54
ScrFI CCNGG 1 cut(s) 88
SetI ASST 3 cut(s) 78, 127, 134
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 157
SmoI CTYRAG 1 cut(s) 157
Sse9I AATT 1 cut(s) 67
SspMI CTAG 2 cut(s) 47, 196
StyD4I CCNGG 1 cut(s) 86
StyI CCWWGG 1 cut(s) 46
TaiI ACGT 2 cut(s) 78, 134
TaqI TCGA 1 cut(s) 110
TasI AATT 1 cut(s) 67
TatI WGTACW 1 cut(s) 52
TseFI GTSAC 2 cut(s) 34, 125
Tsp45I GTSAC 2 cut(s) 34, 125
TspDTI ATGAA 1 cut(s) 11
XapI RAATTY 1 cut(s) 67
XmaJI CCTAGG 1 cut(s) 46
XspI CTAG 2 cut(s) 47, 196
ZraI GACGTC 1 cut(s) 76
ZrmI AGTACT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.