pycom05g23690

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
Physical Location & Seq
Forward (+)
25493496 .. 25494326
831 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g23690.1

Sequence Viewer

Length: 528 bp
ATGACTATCTTCTTATTTAACTTCAATTTGTATTTAATACAAATAATTATTTTGGTAGATATGGAATACTTACGTTACATCCTTAGGAGTATAGTGGTGAACATTGACAATATCCGCATTAAAGGGGCACGGTTAAATAATTTTATGTTCATATTGAATATTCATTCATGCTCACATATTTATATGAGTAGAATCTTTGATTGTTTCATCTCATTTGGGATTTTACTTTTTAGTGAATGTACAATTTTCATCTCATTTGAGATTCTACTTTTTAAAAGCTCTAAATTGTGCTTCATGAACAACTTATACAAACTAATTTATAAATTCATATTCTCACTGGGTTGTATCTTTTTTTTTATTGGAGTAAACCTCAGTTCATGGGACAACATCTTCTGCTACCTCAACCAACGGTTCATGACGAAAACTTTTCATGTTCCAATCGTAATCTTTTTTGTATGTAAACATCTTCTTAACGTTTTCAACGTAAATAATATTAATCTTATATGTTACAATCTTCTATATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

20.98

Weight (kDa)

8.94

Isoelectric Point (pI)

46.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 321
AciI CCGC 1 cut(s) 115
AclI AACGTT 1 cut(s) 474
AcsI RAATTY 1 cut(s) 323
AfaI GTAC 1 cut(s) 241
AgsI TTSAA 3 cut(s) 25, 157, 481
AluBI AGCT 1 cut(s) 279
AluI AGCT 1 cut(s) 279
ApoI RAATTY 1 cut(s) 323
AseI ATTAAT 1 cut(s) 495
AsuHPI GGTGA 1 cut(s) 109
AxyI CCTNAGG 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 130
BmrI ACTGGG 1 cut(s) 347
BmuI ACTGGG 1 cut(s) 347
BplI GAGNNNNNCTC 2 cut(s) 354, 386
Bse1I ACTGG 1 cut(s) 342
Bse21I CCTNAGG 1 cut(s) 83
BseGI GGATG 1 cut(s) 78
BseMII CTCAG 1 cut(s) 385
BseNI ACTGG 1 cut(s) 342
BseSI GKGCMC 1 cut(s) 130
BslFI GGGAC 1 cut(s) 395
BsmFI GGGAC 1 cut(s) 395
Bsp1286I GDGCHC 1 cut(s) 130
Bsp1407I TGTACA 1 cut(s) 239
BspACI CCGC 1 cut(s) 115
BspCNI CTCAG 1 cut(s) 384
BspHI TCATGA 2 cut(s) 294, 414
BsrGI TGTACA 1 cut(s) 239
BsrI ACTGG 1 cut(s) 342
Bst4CI ACNGT 2 cut(s) 132, 411
BstAUI TGTACA 1 cut(s) 239
BstDEI CTNAG 2 cut(s) 83, 371
BstF5I GGATG 1 cut(s) 78
BstSLI GKGCMC 1 cut(s) 130
Bsu36I CCTNAGG 1 cut(s) 83
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 335
CciI TCATGA 2 cut(s) 294, 414
Csp6I GTAC 1 cut(s) 240
CviAII CATG 5 cut(s) 168, 295, 378, 415, 431
CviJI RGCY 1 cut(s) 279
CviKI_1 RGCY 1 cut(s) 279
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 2 cut(s) 83, 371
DraI TTTAAA 1 cut(s) 274
Eco81I CCTNAGG 1 cut(s) 83
FaeI CATG 5 cut(s) 171, 298, 381, 418, 434
FaqI GGGAC 1 cut(s) 395
FatI CATG 5 cut(s) 167, 294, 377, 414, 430
FokI GGATG 1 cut(s) 65
Hin1II CATG 5 cut(s) 171, 298, 381, 418, 434
HinfI GANTC 2 cut(s) 192, 262
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 3 cut(s) 100, 367, 461
Hpy188III TCNNGA 2 cut(s) 295, 415
Hpy8I GTNNAC 3 cut(s) 100, 367, 461
HpyCH4III ACNGT 2 cut(s) 132, 411
HpyCH4IV ACGT 3 cut(s) 73, 474, 483
HpyF3I CTNAG 2 cut(s) 83, 371
HpySE526I ACGT 3 cut(s) 73, 474, 483
Hsp92II CATG 5 cut(s) 171, 298, 381, 418, 434
LpnPI CCDG 1 cut(s) 323
MaeII ACGT 3 cut(s) 73, 474, 483
MaeIII GTNAC 2 cut(s) 74, 506
MboII GAAGA 3 cut(s) 382, 458, 506
MhlI GDGCHC 1 cut(s) 130
MluCI AATT 7 cut(s) 25, 45, 139, 243, 284, 315, 323
MnlI CCTC 2 cut(s) 380, 410
MseI TTAA 7 cut(s) 18, 35, 120, 134, 273, 471, 495
NlaIII CATG 5 cut(s) 171, 298, 381, 418, 434
PagI TCATGA 2 cut(s) 294, 414
PcsI WCGNNNNNNNCGW 1 cut(s) 480
PfeI GAWTC 2 cut(s) 192, 262
PshBI ATTAAT 1 cut(s) 495
PsiI TTATAA 1 cut(s) 321
Psp1406I AACGTT 1 cut(s) 474
PsrI GAACNNNNNNTAC 2 cut(s) 290, 322
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SaqAI TTAA 7 cut(s) 18, 35, 120, 134, 273, 471, 495
SduI GDGCHC 1 cut(s) 130
SetI ASST 6 cut(s) 76, 281, 372, 402, 477, 486
SgeI CNNG 7 cut(s) 141, 180, 307, 350, 390, 427, 443
Sse9I AATT 7 cut(s) 25, 45, 139, 243, 284, 315, 323
SsiI CCGC 1 cut(s) 115
SspI AATATT 2 cut(s) 160, 493
TaaI ACNGT 2 cut(s) 132, 411
TaiI ACGT 3 cut(s) 76, 477, 486
TasI AATT 7 cut(s) 25, 45, 139, 243, 284, 315, 323
TatI WGTACW 1 cut(s) 239
TfiI GAWTC 2 cut(s) 192, 262
Tru1I TTAA 7 cut(s) 18, 35, 120, 134, 273, 471, 495
Tru9I TTAA 7 cut(s) 18, 35, 120, 134, 273, 471, 495
TscAI CASTG 1 cut(s) 342
TspRI CASTG 1 cut(s) 342
VspI ATTAAT 1 cut(s) 495
XapI RAATTY 1 cut(s) 323
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.