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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 297, 737 |
| AccII | CGCG | 2 cut(s) | 129, 1001 |
| AciI | CCGC | 6 cut(s) | 129, 999, 1001, 1392, 1407, 1756 |
| AcoI | YGGCCR | 1 cut(s) | 1389 |
| AcsI | RAATTY | 7 cut(s) | 134, 222, 265, 320, 403, 826, 1118 |
| AfaI | GTAC | 9 cut(s) | 437, 472, 500, 629, 694, 767, 901, 1066, 1493 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 128 |
| AgsI | TTSAA | 7 cut(s) | 93, 217, 320, 826, 931, 1679, 1771 |
| AjnI | CCWGG | 1 cut(s) | 1751 |
| AjuI | GAANNNNNNNTTGG | 6 cut(s) | 183, 215, 467, 499, 1520, 1552 |
| AluBI | AGCT | 1 cut(s) | 1736 |
| AluI | AGCT | 1 cut(s) | 1736 |
| AoxI | GGCC | 2 cut(s) | 1111, 1389 |
| ApeKI | GCWGC | 2 cut(s) | 992, 1692 |
| ApoI | RAATTY | 7 cut(s) | 134, 222, 265, 320, 403, 826, 1118 |
| AseI | ATTAAT | 3 cut(s) | 704, 879, 1500 |
| AspS9I | GGNCC | 2 cut(s) | 334, 913 |
| AsuC2I | CCSGG | 1 cut(s) | 1552 |
| AvaII | GGWCC | 2 cut(s) | 334, 913 |
| BaeGI | GKGCMC | 1 cut(s) | 527 |
| BbvI | GCAGC | 2 cut(s) | 1004, 1679 |
| BccI | CCATC | 3 cut(s) | 186, 245, 1417 |
| BceAI | ACGGC | 1 cut(s) | 1404 |
| BciT130I | CCWGG | 1 cut(s) | 1753 |
| BciVI | GTATCC | 1 cut(s) | 804 |
| BclI | TGATCA | 5 cut(s) | 3, 327, 919, 1186, 1302 |
| BcnI | CCSGG | 1 cut(s) | 1552 |
| BfaI | CTAG | 1 cut(s) | 1059 |
| BfmI | CTRYAG | 3 cut(s) | 1281, 1664, 1698 |
| BfuI | GTATCC | 1 cut(s) | 804 |
| BisI | GCNGC | 3 cut(s) | 993, 1392, 1693 |
| BlsI | GCNGC | 3 cut(s) | 994, 1393, 1694 |
| Bme1390I | CCNGG | 2 cut(s) | 1552, 1753 |
| Bme18I | GGWCC | 2 cut(s) | 334, 913 |
| BmgT120I | GGNCC | 2 cut(s) | 334, 913 |
| BmiI | GGNNCC | 1 cut(s) | 914 |
| BmrFI | CCNGG | 2 cut(s) | 1552, 1753 |
| BpuMI | CCSGG | 1 cut(s) | 1552 |
| BsaAI | YACGTR | 1 cut(s) | 1481 |
| BsaJI | CCNNGG | 6 cut(s) | 252, 337, 987, 999, 1536, 1751 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 128 |
| Bse3DI | GCAATG | 1 cut(s) | 1560 |
| BseBI | CCWGG | 1 cut(s) | 1753 |
| BseDI | CCNNGG | 6 cut(s) | 252, 337, 987, 999, 1536, 1751 |
| BseGI | GGATG | 1 cut(s) | 92 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 128 |
| BseMI | GCAATG | 1 cut(s) | 1560 |
| BseMII | CTCAG | 1 cut(s) | 1784 |
| BseRI | GAGGAG | 2 cut(s) | 1372, 1413 |
| BseSI | GKGCMC | 1 cut(s) | 527 |
| BseX3I | CGGCCG | 1 cut(s) | 1389 |
| BseXI | GCAGC | 2 cut(s) | 1004, 1679 |
| Bsh1236I | CGCG | 2 cut(s) | 129, 1001 |
| Bsh1285I | CGRYCG | 1 cut(s) | 1392 |
| BshFI | GGCC | 2 cut(s) | 1113, 1391 |
| BsiEI | CGRYCG | 1 cut(s) | 1392 |
| BsiSI | CCGG | 1 cut(s) | 1552 |
| BslFI | GGGAC | 1 cut(s) | 926 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 128 |
| BsmFI | GGGAC | 1 cut(s) | 926 |
| BsnI | GGCC | 2 cut(s) | 1113, 1391 |
| Bsp1286I | GDGCHC | 1 cut(s) | 527 |
| Bsp1407I | TGTACA | 1 cut(s) | 899 |
| Bsp143I | GATC | 5 cut(s) | 3, 327, 919, 1186, 1302 |
| Bsp19I | CCATGG | 1 cut(s) | 987 |
| BspACI | CCGC | 6 cut(s) | 129, 999, 1001, 1392, 1407, 1756 |
| BspANI | GGCC | 2 cut(s) | 1113, 1391 |
| BspCNI | CTCAG | 1 cut(s) | 1785 |
| BspFNI | CGCG | 2 cut(s) | 129, 1001 |
| BspLI | GGNNCC | 1 cut(s) | 914 |
| BspMAI | CTGCAG | 1 cut(s) | 1702 |
| BsrDI | GCAATG | 1 cut(s) | 1560 |
| BsrGI | TGTACA | 1 cut(s) | 899 |
| BssECI | CCNNGG | 6 cut(s) | 252, 337, 987, 999, 1536, 1751 |
| BssMI | GATC | 5 cut(s) | 3, 327, 919, 1186, 1302 |
| BssT1I | CCWWGG | 3 cut(s) | 337, 987, 1536 |
| Bst2UI | CCWGG | 1 cut(s) | 1753 |
| Bst4CI | ACNGT | 4 cut(s) | 256, 1285, 1469, 1594 |
| BstAUI | TGTACA | 1 cut(s) | 899 |
| BstBAI | YACGTR | 1 cut(s) | 1481 |
| BstC8I | GCNNGC | 1 cut(s) | 1567 |
| BstDEI | CTNAG | 2 cut(s) | 1732, 1793 |
| BstDSI | CCRYGG | 3 cut(s) | 252, 987, 999 |
| BstF5I | GGATG | 1 cut(s) | 92 |
| BstFNI | CGCG | 2 cut(s) | 129, 1001 |
| BstKTI | GATC | 5 cut(s) | 6, 330, 922, 1189, 1305 |
| BstMBI | GATC | 5 cut(s) | 3, 327, 919, 1186, 1302 |
| BstMCI | CGRYCG | 1 cut(s) | 1392 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 998, 1319, 1753 |
| BstNI | CCWGG | 1 cut(s) | 1753 |
| BstNSI | RCATGY | 1 cut(s) | 1441 |
| BstSCI | CCNGG | 2 cut(s) | 1550, 1751 |
| BstSFI | CTRYAG | 3 cut(s) | 1281, 1664, 1698 |
| BstSLI | GKGCMC | 1 cut(s) | 527 |
| BstUI | CGCG | 2 cut(s) | 129, 1001 |
| BstV1I | GCAGC | 2 cut(s) | 1004, 1679 |
| BstZI | CGGCCG | 1 cut(s) | 1389 |
| BsuI | GTATCC | 1 cut(s) | 804 |
| BsuRI | GGCC | 2 cut(s) | 1113, 1391 |
| BtgI | CCRYGG | 3 cut(s) | 252, 987, 999 |
| BtsCI | GGATG | 1 cut(s) | 92 |
| BtsIMutI | CAGTG | 1 cut(s) | 1474 |
| Cac8I | GCNNGC | 1 cut(s) | 1567 |
| Cfr13I | GGNCC | 2 cut(s) | 334, 913 |
| Cfr42I | CCGCGG | 1 cut(s) | 1002 |
| Csp6I | GTAC | 9 cut(s) | 436, 471, 499, 628, 693, 766, 900, 1065, 1492 |
| CviAII | CATG | 5 cut(s) | 698, 988, 1254, 1438, 1639 |
| CviJI | RGCY | 8 cut(s) | 11, 177, 400, 1113, 1391, 1413, 1692, 1736 |
| CviKI_1 | RGCY | 8 cut(s) | 11, 177, 400, 1113, 1391, 1413, 1692, 1736 |
| CviQI | GTAC | 9 cut(s) | 436, 471, 499, 628, 693, 766, 900, 1065, 1492 |
| DdeI | CTNAG | 2 cut(s) | 1732, 1793 |
| DpnI | GATC | 5 cut(s) | 5, 329, 921, 1188, 1304 |
| DpnII | GATC | 5 cut(s) | 3, 327, 919, 1186, 1302 |
| DraI | TTTAAA | 4 cut(s) | 346, 537, 1104, 1843 |
| EaeI | YGGCCR | 1 cut(s) | 1389 |
| EagI | CGGCCG | 1 cut(s) | 1389 |
| EciI | GGCGGA | 1 cut(s) | 1422 |
| EclXI | CGGCCG | 1 cut(s) | 1389 |
| Eco130I | CCWWGG | 3 cut(s) | 337, 987, 1536 |
| Eco32I | GATATC | 1 cut(s) | 1476 |
| Eco47I | GGWCC | 2 cut(s) | 334, 913 |
| Eco52I | CGGCCG | 1 cut(s) | 1389 |
| EcoO109I | RGGNCCY | 2 cut(s) | 334, 913 |
| EcoRII | CCWGG | 1 cut(s) | 1751 |
| EcoRV | GATATC | 1 cut(s) | 1476 |
| EcoT14I | CCWWGG | 3 cut(s) | 337, 987, 1536 |
| EcoT22I | ATGCAT | 1 cut(s) | 1443 |
| ErhI | CCWWGG | 3 cut(s) | 337, 987, 1536 |
| FaeI | CATG | 5 cut(s) | 701, 991, 1257, 1441, 1642 |
| FaqI | GGGAC | 1 cut(s) | 926 |
| FatI | CATG | 5 cut(s) | 697, 987, 1253, 1437, 1638 |
| FauNDI | CATATG | 2 cut(s) | 570, 1044 |
| FbaI | TGATCA | 5 cut(s) | 3, 327, 919, 1186, 1302 |
| Fnu4HI | GCNGC | 3 cut(s) | 993, 1392, 1693 |
| FokI | GGATG | 1 cut(s) | 99 |
| Fsp4HI | GCNGC | 3 cut(s) | 993, 1392, 1693 |
| FspBI | CTAG | 1 cut(s) | 1059 |
| GluI | GCNGC | 3 cut(s) | 993, 1392, 1693 |
| HaeIII | GGCC | 2 cut(s) | 1113, 1391 |
| HapII | CCGG | 1 cut(s) | 1552 |
| Hin1II | CATG | 5 cut(s) | 701, 991, 1257, 1441, 1642 |
| HincII | GTYRAC | 2 cut(s) | 147, 259 |
| HindII | GTYRAC | 2 cut(s) | 147, 259 |
| HinfI | GANTC | 6 cut(s) | 956, 1004, 1039, 1143, 1528, 1714 |
| HpaI | GTTAAC | 1 cut(s) | 259 |
| HpaII | CCGG | 1 cut(s) | 1552 |
| Hpy166II | GTNNAC | 3 cut(s) | 147, 259, 900 |
| Hpy188I | TCNGA | 4 cut(s) | 67, 1132, 1422, 1620 |
| Hpy8I | GTNNAC | 3 cut(s) | 147, 259, 900 |
| HpyAV | CCTTC | 2 cut(s) | 1345, 1397 |
| HpyCH4III | ACNGT | 4 cut(s) | 256, 1285, 1469, 1594 |
| HpyCH4IV | ACGT | 2 cut(s) | 1480, 1659 |
| HpyCH4V | TGCA | 6 cut(s) | 453, 645, 787, 1441, 1700, 1707 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 998, 1319, 1753 |
| HpyF3I | CTNAG | 2 cut(s) | 1732, 1793 |
| HpySE526I | ACGT | 2 cut(s) | 1480, 1659 |
| Hsp92II | CATG | 5 cut(s) | 701, 991, 1257, 1441, 1642 |
| Ksp22I | TGATCA | 5 cut(s) | 3, 327, 919, 1186, 1302 |
| KspAI | GTTAAC | 1 cut(s) | 259 |
| KspI | CCGCGG | 1 cut(s) | 1002 |
| Kzo9I | GATC | 5 cut(s) | 3, 327, 919, 1186, 1302 |
| LpnPI | CCDG | 6 cut(s) | 1408, 1538, 1565, 1738, 1765, 1790 |
| Lsp1109I | GCAGC | 2 cut(s) | 1004, 1679 |
| MaeI | CTAG | 1 cut(s) | 1059 |
| MaeII | ACGT | 2 cut(s) | 1480, 1659 |
| MaeIII | GTNAC | 3 cut(s) | 372, 838, 1249 |
| MalI | GATC | 5 cut(s) | 5, 329, 921, 1188, 1304 |
| MboI | GATC | 5 cut(s) | 3, 327, 919, 1186, 1302 |
| MboII | GAAGA | 2 cut(s) | 965, 1438 |
| MhlI | GDGCHC | 1 cut(s) | 527 |
| MmeI | TCCRAC | 3 cut(s) | 36, 64, 256 |
| Mph1103I | ATGCAT | 1 cut(s) | 1443 |
| MspA1I | CMGCKG | 1 cut(s) | 1001 |
| MspI | CCGG | 1 cut(s) | 1552 |
| MspR9I | CCNGG | 2 cut(s) | 1552, 1753 |
| MvaI | CCWGG | 1 cut(s) | 1753 |
| MvnI | CGCG | 2 cut(s) | 129, 1001 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 998, 1319, 1753 |
| NciI | CCSGG | 1 cut(s) | 1552 |
| NcoI | CCATGG | 1 cut(s) | 987 |
| NdeI | CATATG | 2 cut(s) | 570, 1044 |
| NdeII | GATC | 5 cut(s) | 3, 327, 919, 1186, 1302 |
| NlaIII | CATG | 5 cut(s) | 701, 991, 1257, 1441, 1642 |
| NlaIV | GGNNCC | 1 cut(s) | 914 |
| NsiI | ATGCAT | 1 cut(s) | 1443 |
| NspI | RCATGY | 1 cut(s) | 1441 |
| PacI | TTAATTAA | 1 cut(s) | 1500 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1656 |
| PfeI | GAWTC | 6 cut(s) | 956, 1004, 1039, 1143, 1528, 1714 |
| PkrI | GCNGC | 3 cut(s) | 994, 1393, 1694 |
| Ppu21I | YACGTR | 1 cut(s) | 1481 |
| PpuMI | RGGWCCY | 2 cut(s) | 334, 913 |
| PshBI | ATTAAT | 3 cut(s) | 704, 879, 1500 |
| PsiI | TTATAA | 2 cut(s) | 297, 737 |
| Psp5II | RGGWCCY | 2 cut(s) | 334, 913 |
| Psp6I | CCWGG | 1 cut(s) | 1751 |
| PspGI | CCWGG | 1 cut(s) | 1751 |
| PspN4I | GGNNCC | 1 cut(s) | 914 |
| PspPI | GGNCC | 2 cut(s) | 334, 913 |
| PspPPI | RGGWCCY | 2 cut(s) | 334, 913 |
| PstI | CTGCAG | 1 cut(s) | 1702 |
| RsaI | GTAC | 9 cut(s) | 437, 472, 500, 629, 694, 767, 901, 1066, 1493 |
| RsaNI | GTAC | 9 cut(s) | 436, 471, 499, 628, 693, 766, 900, 1065, 1492 |
| SacII | CCGCGG | 1 cut(s) | 1002 |
| SatI | GCNGC | 3 cut(s) | 993, 1392, 1693 |
| Sau3AI | GATC | 5 cut(s) | 3, 327, 919, 1186, 1302 |
| Sau96I | GGNCC | 2 cut(s) | 334, 913 |
| ScrFI | CCNGG | 2 cut(s) | 1552, 1753 |
| SduI | GDGCHC | 1 cut(s) | 527 |
| SfcI | CTRYAG | 3 cut(s) | 1281, 1664, 1698 |
| Sfr303I | CCGCGG | 1 cut(s) | 1002 |
| SgrBI | CCGCGG | 1 cut(s) | 1002 |
| SinI | GGWCC | 2 cut(s) | 334, 913 |
| SsiI | CCGC | 6 cut(s) | 129, 999, 1001, 1392, 1407, 1756 |
| SspI | AATATT | 2 cut(s) | 458, 1093 |
| SspMI | CTAG | 1 cut(s) | 1059 |
| StyD4I | CCNGG | 2 cut(s) | 1550, 1751 |
| StyI | CCWWGG | 3 cut(s) | 337, 987, 1536 |
| TaaI | ACNGT | 4 cut(s) | 256, 1285, 1469, 1594 |
| TaiI | ACGT | 2 cut(s) | 1483, 1662 |
| TaqI | TCGA | 2 cut(s) | 951, 1076 |
| TatI | WGTACW | 2 cut(s) | 899, 1491 |
| TauI | GCSGC | 1 cut(s) | 1394 |
| TfiI | GAWTC | 6 cut(s) | 956, 1004, 1039, 1143, 1528, 1714 |
| TscAI | CASTG | 1 cut(s) | 1474 |
| TseI | GCWGC | 2 cut(s) | 992, 1692 |
| TspDTI | ATGAA | 6 cut(s) | 475, 1031, 1139, 1438, 1627, 1728 |
| TspGWI | ACGGA | 1 cut(s) | 1803 |
| TspRI | CASTG | 1 cut(s) | 1474 |
| VpaK11BI | GGWCC | 2 cut(s) | 334, 913 |
| VspI | ATTAAT | 3 cut(s) | 704, 879, 1500 |
| XapI | RAATTY | 7 cut(s) | 134, 222, 265, 320, 403, 826, 1118 |
| XceI | RCATGY | 1 cut(s) | 1441 |
| XspI | CTAG | 1 cut(s) | 1059 |
| Zsp2I | ATGCAT | 1 cut(s) | 1443 |