MD06G1183900.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0000513
Physical Location & Seq
Forward (+)
32225776 .. 32227302
1527 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1183900.v1.1.491

Sequence Viewer

Length: 201 bp
ATGTTCACATCCACACCGTTCGCTCACCTTGGATCCAAGTTTAGGTGCCAGTCTTGTTGGGTAGATTGCATTAGGCGATCCGACTTGTATGTGATGTGCTTTTGCACCAGTCTTTACGTGATCGTAATACTAGAGCATATTGATTACACCAAGTCCTGTTCGTGTCAGAAACCATCTGTTCGAACTTGTGTGCCAGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.58

Weight (kDa)

8.48

Isoelectric Point (pI)

63.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 45
AclWI GGATC 3 cut(s) 27, 40, 72
AfiI CCNNNNNNNGG 1 cut(s) 42
AluBI AGCT 1 cut(s) 197
AluI AGCT 1 cut(s) 197
AlwI GGATC 3 cut(s) 27, 40, 72
AsuHPI GGTGA 1 cut(s) 17
AsuII TTCGAA 1 cut(s) 181
BamHI GGATCC 1 cut(s) 32
BanI GGYRCC 1 cut(s) 45
BccI CCATC 1 cut(s) 181
BfaI CTAG 1 cut(s) 131
BmiI GGNNCC 2 cut(s) 34, 47
Bpu14I TTCGAA 1 cut(s) 181
BsaAI YACGTR 1 cut(s) 118
BsaJI CCNNGG 1 cut(s) 28
Bsc4I CCNNNNNNNGG 1 cut(s) 42
Bse1I ACTGG 2 cut(s) 49, 108
BseDI CCNNGG 1 cut(s) 28
BseGI GGATG 1 cut(s) 8
BseLI CCNNNNNNNGG 1 cut(s) 42
BseNI ACTGG 2 cut(s) 49, 108
BshNI GGYRCC 1 cut(s) 45
BslI CCNNNNNNNGG 1 cut(s) 42
Bsp119I TTCGAA 1 cut(s) 181
Bsp143I GATC 3 cut(s) 32, 77, 120
BspLI GGNNCC 2 cut(s) 34, 47
BspPI GGATC 3 cut(s) 27, 40, 72
BspT104I TTCGAA 1 cut(s) 181
BspT107I GGYRCC 1 cut(s) 45
BsrI ACTGG 2 cut(s) 49, 108
BssECI CCNNGG 1 cut(s) 28
BssMI GATC 3 cut(s) 32, 77, 120
BssT1I CCWWGG 1 cut(s) 28
Bst4CI ACNGT 1 cut(s) 18
BstBAI YACGTR 1 cut(s) 118
BstBI TTCGAA 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 195
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 8
BstKTI GATC 3 cut(s) 35, 80, 123
BstMBI GATC 3 cut(s) 32, 77, 120
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BtsCI GGATG 1 cut(s) 8
Cac8I GCNNGC 1 cut(s) 195
CviJI RGCY 1 cut(s) 197
CviKI_1 RGCY 1 cut(s) 197
DdeI CTNAG 1 cut(s) 198
DpnI GATC 3 cut(s) 34, 79, 122
DpnII GATC 3 cut(s) 32, 77, 120
Eco130I CCWWGG 1 cut(s) 28
EcoT14I CCWWGG 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 28
FaiI YATR 2 cut(s) 90, 138
FspBI CTAG 1 cut(s) 131
HphI GGTGA 1 cut(s) 17
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 2 cut(s) 82, 168
Hpy8I GTNNAC 1 cut(s) 6
HpyCH4III ACNGT 1 cut(s) 18
HpyCH4IV ACGT 1 cut(s) 117
HpyCH4V TGCA 2 cut(s) 69, 105
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 1 cut(s) 117
Kzo9I GATC 3 cut(s) 32, 77, 120
LpnPI CCDG 3 cut(s) 62, 121, 169
MaeI CTAG 1 cut(s) 131
MaeII ACGT 1 cut(s) 117
MalI GATC 3 cut(s) 34, 79, 122
MboI GATC 3 cut(s) 32, 77, 120
MflI RGATCY 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 105
NdeII GATC 3 cut(s) 32, 77, 120
NlaIV GGNNCC 2 cut(s) 34, 47
NspV TTCGAA 1 cut(s) 181
Ppu21I YACGTR 1 cut(s) 118
PspN4I GGNNCC 2 cut(s) 34, 47
PsuI RGATCY 1 cut(s) 32
Sau3AI GATC 3 cut(s) 32, 77, 120
SetI ASST 4 cut(s) 30, 47, 120, 199
SfuI TTCGAA 1 cut(s) 181
SspMI CTAG 1 cut(s) 131
StyI CCWWGG 1 cut(s) 28
TaaI ACNGT 1 cut(s) 18
TaiI ACGT 1 cut(s) 120
TaqI TCGA 1 cut(s) 181
XspI CTAG 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.