pycom13g23350

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Forward (+)
20939620 .. 20940191
572 bp
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UTR
Exon/CDS
Intron
pycom13g23350.1

Sequence Viewer

Length: 459 bp
ATGGCAATCATTGCTCTATCATACATATCTTTTATAGCTTGGATATATGCTACCCGTACTCCTTTCTTCTCTAAAATCGTCGAAAGAATGTCTCTTGGGACCCTATCATACGCTTTTTCCAAATCTATAAAGACCAATGCCTCCATGGTTGAGCGTCCTAGCATGAACCCGAATTGGCTGTCCAAGACTTGTGTCTCTTGCCTTAGTCTCTGCTCAATTACTTTCTCCCAAATCCCCCTTATTCTTGTAGATAGCCACCAAAGTGCTCTTTCGCCACTCATTTGGCATCTTCTTCGTTTTCAAAATCTTATTGAAGAGGTTTGTGAGCCGTGCTATACTCGTCTCTCCCAAGACTTTCCACACTTATATCGGTATATCATCTGGGCCCACTGCTTTTGTATGCTTCATCTTGTTCAATGCTACAACCAATTCTTCCTTCCCAATTCGGCGATAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.62

Weight (kDa)

8.66

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 58
AgsI TTSAA 3 cut(s) 302, 314, 416
AjuI GAANNNNNNNTTGG 2 cut(s) 420, 452
AleI CACNNNNGTG 1 cut(s) 261
AluBI AGCT 1 cut(s) 38
AluI AGCT 1 cut(s) 38
Alw21I GWGCWC 1 cut(s) 268
Alw26I GTCTC 4 cut(s) 96, 199, 212, 347
AoxI GGCC 1 cut(s) 384
ApaI GGGCCC 1 cut(s) 388
ArsI GACNNNNNNTTYG 2 cut(s) 164, 196
AspS9I GGNCC 3 cut(s) 99, 384, 385
AvaII GGWCC 1 cut(s) 99
BaeGI GKGCMC 1 cut(s) 388
BanII GRGCYC 1 cut(s) 388
Bbv12I GWGCWC 1 cut(s) 268
BceAI ACGGC 1 cut(s) 313
BcgI CGANNNNNNTGC 2 cut(s) 275, 309
BcoDI GTCTC 4 cut(s) 96, 199, 212, 347
BfaI CTAG 1 cut(s) 159
Bme18I GGWCC 1 cut(s) 99
BmgT120I GGNCC 3 cut(s) 99, 384, 385
BmiI GGNNCC 3 cut(s) 100, 101, 386
BmsI GCATC 1 cut(s) 295
BoxI GACNNNNGTC 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 144
BsaXI ACNNNNNCTCC 2 cut(s) 43, 73
Bse3DI GCAATG 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 144
BseMI GCAATG 1 cut(s) 9
BseSI GKGCMC 1 cut(s) 388
BshFI GGCC 1 cut(s) 386
BsiHKAI GWGCWC 1 cut(s) 268
BslFI GGGAC 1 cut(s) 112
BsmAI GTCTC 4 cut(s) 96, 199, 212, 347
BsmBI CGTCTC 1 cut(s) 347
BsmFI GGGAC 1 cut(s) 112
BsnI GGCC 1 cut(s) 386
Bsp120I GGGCCC 1 cut(s) 384
Bsp1286I GDGCHC 2 cut(s) 268, 388
Bsp19I CCATGG 1 cut(s) 144
BspANI GGCC 1 cut(s) 386
BspLI GGNNCC 3 cut(s) 100, 101, 386
BsrDI GCAATG 1 cut(s) 9
BssECI CCNNGG 1 cut(s) 144
BssT1I CCWWGG 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 309
BstAPI GCANNNNNTGC 1 cut(s) 11
BstDEI CTNAG 1 cut(s) 203
BstDSI CCRYGG 1 cut(s) 144
BstMAI GTCTC 4 cut(s) 96, 199, 212, 347
BstMWI GCNNNNNNNGC 1 cut(s) 11
BstPAI GACNNNNGTC 1 cut(s) 191
BstSLI GKGCMC 1 cut(s) 388
BstXI CCANNNNNNTGG 1 cut(s) 282
BsuRI GGCC 1 cut(s) 386
BtgI CCRYGG 1 cut(s) 144
BtsI GCAGTG 1 cut(s) 388
BtsIMutI CAGTG 1 cut(s) 388
Cfr13I GGNCC 3 cut(s) 99, 384, 385
CseI GACGC 1 cut(s) 143
Csp6I GTAC 1 cut(s) 57
CspCI CAANNNNNGTGG 2 cut(s) 377, 412
CviAII CATG 2 cut(s) 145, 163
CviJI RGCY 5 cut(s) 38, 178, 255, 328, 386
CviKI_1 RGCY 5 cut(s) 38, 178, 255, 328, 386
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 1 cut(s) 203
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
Eco130I CCWWGG 1 cut(s) 144
Eco24I GRGCYC 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 99
EcoO109I RGGNCCY 1 cut(s) 99
EcoT14I CCWWGG 1 cut(s) 144
EcoT38I GRGCYC 1 cut(s) 388
ErhI CCWWGG 1 cut(s) 144
Esp3I CGTCTC 1 cut(s) 347
FaeI CATG 2 cut(s) 148, 166
FaqI GGGAC 1 cut(s) 112
FatI CATG 2 cut(s) 144, 162
FriOI GRGCYC 1 cut(s) 388
FspBI CTAG 1 cut(s) 159
HaeIII GGCC 1 cut(s) 386
HgaI GACGC 1 cut(s) 143
Hin1II CATG 2 cut(s) 148, 166
Hpy99I CGWCG 1 cut(s) 83
HpyAV CCTTC 1 cut(s) 446
HpyF10VI GCNNNNNNNGC 1 cut(s) 11
HpyF3I CTNAG 1 cut(s) 203
Hsp92II CATG 2 cut(s) 148, 166
KflI GGGWCCC 1 cut(s) 99
LpnPI CCDG 1 cut(s) 367
LweI GCATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 159
MboII GAAGA 5 cut(s) 58, 281, 284, 326, 424
MhlI GDGCHC 2 cut(s) 268, 388
MluCI AATT 4 cut(s) 172, 216, 428, 442
MnlI CCTC 2 cut(s) 151, 310
MslI CAYNNNNRTG 1 cut(s) 261
MwoI GCNNNNNNNGC 1 cut(s) 11
NcoI CCATGG 1 cut(s) 144
NlaIII CATG 2 cut(s) 148, 166
NlaIV GGNNCC 3 cut(s) 100, 101, 386
OliI CACNNNNGTG 1 cut(s) 261
PpuMI RGGWCCY 1 cut(s) 99
PshAI GACNNNNGTC 1 cut(s) 191
Psp5II RGGWCCY 1 cut(s) 99
PspN4I GGNNCC 3 cut(s) 100, 101, 386
PspOMI GGGCCC 1 cut(s) 384
PspPI GGNCC 3 cut(s) 99, 384, 385
PspPPI RGGWCCY 1 cut(s) 99
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
RseI CAYNNNNRTG 1 cut(s) 261
Sau96I GGNCC 3 cut(s) 99, 384, 385
SduI GDGCHC 2 cut(s) 268, 388
SetI ASST 2 cut(s) 40, 321
SfaNI GCATC 1 cut(s) 295
SinI GGWCC 1 cut(s) 99
SmiMI CAYNNNNRTG 1 cut(s) 261
Sse9I AATT 4 cut(s) 172, 216, 428, 442
SspMI CTAG 1 cut(s) 159
StyI CCWWGG 1 cut(s) 144
TaqI TCGA 1 cut(s) 81
TasI AATT 4 cut(s) 172, 216, 428, 442
TscAI CASTG 1 cut(s) 395
TspDTI ATGAA 2 cut(s) 179, 395
TspRI CASTG 1 cut(s) 395
VpaK11BI GGWCC 1 cut(s) 99
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
XspI CTAG 1 cut(s) 159
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.