pycom15g31400

transposition, RNA-mediated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000513
Physical Location & Seq
Reverse (-)
29868327 .. 29868626
300 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g31400.1

Sequence Viewer

Length: 300 bp
ATGGGACATAGAGCGGTGAATTGTCCCCAGGGTCAGCAACAGAAGCCGCAGCAGACCTTTATGCCGCCACCTGCACCGATTCGGCAAATCCAAGGTCCGAGTAATTATGGTCAAACAGGTAGAGGTGGTGCCTATCACTATCAGGGTGATGCTGTTCCCTATGCCCCGGGACCGTATCAGTACCCCCAGGACCCGTATTCACAAGGTGGTTATCCCCCGTATCCCAGCAACTACATGCGTATCCTCCAGCTCCAACAAGTGGTTCTCAGTGGTACCAAGGAGACAGTATCAGCAGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVP_2 RVT_1 Retrotrans_gag rve zf-CCHC

Protein Analysis

100

Amino Acids

10.84

Weight (kDa)

9.13

Isoelectric Point (pI)

73.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 79
Acc36I ACCTGC 1 cut(s) 79
Acc65I GGTACC 1 cut(s) 272
AccB1I GGYRCC 2 cut(s) 128, 272
AccB7I CCANNNNNTGG 1 cut(s) 259
AccBSI CCGCTC 1 cut(s) 14
AciI CCGC 3 cut(s) 14, 47, 65
AdeI CACNNNGTG 1 cut(s) 206
AfaI GTAC 2 cut(s) 182, 274
AfiI CCNNNNNNNGG 1 cut(s) 259
AjnI CCWGG 2 cut(s) 27, 186
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AluBI AGCT 1 cut(s) 250
AluI AGCT 1 cut(s) 250
Alw26I GTCTC 1 cut(s) 275
Ama87I CYCGRG 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 49
ArsI GACNNNNNNTTYG 2 cut(s) 79, 111
Asp718I GGTACC 1 cut(s) 272
AspS9I GGNCC 3 cut(s) 95, 170, 190
AsuC2I CCSGG 2 cut(s) 167, 168
AsuHPI GGTGA 2 cut(s) 28, 158
AvaI CYCGRG 1 cut(s) 166
AvaII GGWCC 3 cut(s) 95, 170, 190
BaeI ACNNNNGTAYC 2 cut(s) 223, 256
BanI GGYRCC 2 cut(s) 128, 272
BbvI GCAGC 1 cut(s) 61
BciT130I CCWGG 2 cut(s) 29, 188
BciVI GTATCC 2 cut(s) 231, 251
BcnI CCSGG 2 cut(s) 167, 168
BcoDI GTCTC 1 cut(s) 275
BfuAI ACCTGC 1 cut(s) 79
BfuI GTATCC 2 cut(s) 231, 251
BisI GCNGC 3 cut(s) 47, 50, 65
BlsI GCNGC 3 cut(s) 48, 51, 66
Bme1390I CCNGG 4 cut(s) 29, 167, 168, 188
Bme18I GGWCC 3 cut(s) 95, 170, 190
BmeT110I CYCGRG 1 cut(s) 166
BmgT120I GGNCC 3 cut(s) 95, 170, 190
BmiI GGNNCC 4 cut(s) 130, 171, 192, 274
BmrFI CCNGG 4 cut(s) 29, 167, 168, 188
BmsI GCATC 1 cut(s) 139
BpmI CTGGAG 1 cut(s) 230
BpuMI CCSGG 2 cut(s) 167, 168
BsaJI CCNNGG 7 cut(s) 27, 28, 91, 165, 166, 186, 276
Bsc4I CCNNNNNNNGG 1 cut(s) 259
BseBI CCWGG 2 cut(s) 29, 188
BseDI CCNNGG 7 cut(s) 27, 28, 91, 165, 166, 186, 276
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 280
BseXI GCAGC 1 cut(s) 61
BseYI CCCAGC 1 cut(s) 224
BsgI GTGCAG 1 cut(s) 57
BshNI GGYRCC 2 cut(s) 128, 272
BsiHKCI CYCGRG 1 cut(s) 166
BsiSI CCGG 1 cut(s) 167
BslFI GGGAC 3 cut(s) 9, 18, 183
BslI CCNNNNNNNGG 1 cut(s) 259
BsmAI GTCTC 1 cut(s) 275
BsmFI GGGAC 3 cut(s) 9, 18, 183
BsoBI CYCGRG 1 cut(s) 166
BspACI CCGC 3 cut(s) 14, 47, 65
BspCNI CTCAG 1 cut(s) 279
BspLI GGNNCC 4 cut(s) 130, 171, 192, 274
BspMI ACCTGC 1 cut(s) 79
BspT107I GGYRCC 2 cut(s) 128, 272
BsrBI CCGCTC 1 cut(s) 14
BssECI CCNNGG 7 cut(s) 27, 28, 91, 165, 166, 186, 276
BssT1I CCWWGG 2 cut(s) 91, 276
Bst2UI CCWGG 2 cut(s) 29, 188
Bst4CI ACNGT 2 cut(s) 174, 286
BstDEI CTNAG 1 cut(s) 266
BstMAI GTCTC 1 cut(s) 275
BstMWI GCNNNNNNNGC 1 cut(s) 43
BstNI CCWGG 2 cut(s) 29, 188
BstNSI RCATGY 1 cut(s) 238
BstSCI CCNGG 4 cut(s) 27, 165, 166, 186
BstV1I GCAGC 1 cut(s) 61
BsuI GTATCC 2 cut(s) 231, 251
BtsIMutI CAGTG 1 cut(s) 274
BveI ACCTGC 1 cut(s) 79
Cfr13I GGNCC 3 cut(s) 95, 170, 190
Cfr9I CCCGGG 1 cut(s) 166
Csp6I GTAC 2 cut(s) 181, 273
CviAII CATG 1 cut(s) 235
CviJI RGCY 2 cut(s) 46, 250
CviKI_1 RGCY 2 cut(s) 46, 250
CviQI GTAC 2 cut(s) 181, 273
DdeI CTNAG 1 cut(s) 266
DraIII CACNNNGTG 1 cut(s) 206
Eco130I CCWWGG 2 cut(s) 91, 276
Eco47I GGWCC 3 cut(s) 95, 170, 190
Eco88I CYCGRG 1 cut(s) 166
EcoO109I RGGNCCY 1 cut(s) 190
EcoRII CCWGG 2 cut(s) 27, 186
EcoT14I CCWWGG 2 cut(s) 91, 276
ErhI CCWWGG 2 cut(s) 91, 276
FaeI CATG 1 cut(s) 238
FaiI YATR 5 cut(s) 9, 62, 108, 162, 236
FaqI GGGAC 3 cut(s) 9, 18, 183
FatI CATG 1 cut(s) 234
Fnu4HI GCNGC 3 cut(s) 47, 50, 65
Fsp4HI GCNGC 3 cut(s) 47, 50, 65
GluI GCNGC 3 cut(s) 47, 50, 65
GsaI CCCAGC 1 cut(s) 228
GsuI CTGGAG 1 cut(s) 230
HapII CCGG 1 cut(s) 167
Hin1II CATG 1 cut(s) 238
HinfI GANTC 1 cut(s) 79
HpaII CCGG 1 cut(s) 167
HphI GGTGA 2 cut(s) 28, 158
Hpy188I TCNGA 1 cut(s) 99
HpyCH4III ACNGT 2 cut(s) 174, 286
HpyCH4V TGCA 1 cut(s) 74
HpyF10VI GCNNNNNNNGC 1 cut(s) 43
HpyF3I CTNAG 1 cut(s) 266
Hsp92II CATG 1 cut(s) 238
KpnI GGTACC 1 cut(s) 276
LmnI GCTCC 1 cut(s) 255
Lsp1109I GCAGC 1 cut(s) 61
LweI GCATC 1 cut(s) 139
MbiI CCGCTC 1 cut(s) 14
MluCI AATT 2 cut(s) 19, 103
MmeI TCCRAC 1 cut(s) 277
MnlI CCTC 2 cut(s) 116, 254
MspI CCGG 1 cut(s) 167
MspR9I CCNGG 4 cut(s) 29, 167, 168, 188
MvaI CCWGG 2 cut(s) 29, 188
MwoI GCNNNNNNNGC 1 cut(s) 43
NciI CCSGG 2 cut(s) 167, 168
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 4 cut(s) 130, 171, 192, 274
NspI RCATGY 1 cut(s) 238
PaqCI CACCTGC 1 cut(s) 79
PasI CCCWGGG 1 cut(s) 28
PfeI GAWTC 1 cut(s) 79
PflMI CCANNNNNTGG 1 cut(s) 259
PkrI GCNGC 3 cut(s) 48, 51, 66
PpuMI RGGWCCY 1 cut(s) 190
Psp5II RGGWCCY 1 cut(s) 190
Psp6I CCWGG 2 cut(s) 27, 186
PspFI CCCAGC 1 cut(s) 224
PspGI CCWGG 2 cut(s) 27, 186
PspN4I GGNNCC 4 cut(s) 130, 171, 192, 274
PspPI GGNCC 3 cut(s) 95, 170, 190
PspPPI RGGWCCY 1 cut(s) 190
RsaI GTAC 2 cut(s) 182, 274
RsaNI GTAC 2 cut(s) 181, 273
SatI GCNGC 3 cut(s) 47, 50, 65
Sau96I GGNCC 3 cut(s) 95, 170, 190
ScrFI CCNGG 4 cut(s) 29, 167, 168, 188
SetI ASST 7 cut(s) 59, 73, 97, 121, 127, 208, 252
SfaNI GCATC 1 cut(s) 139
SinI GGWCC 3 cut(s) 95, 170, 190
SmaI CCCGGG 1 cut(s) 168
Sse9I AATT 2 cut(s) 19, 103
SsiI CCGC 3 cut(s) 14, 47, 65
StyD4I CCNGG 4 cut(s) 27, 165, 166, 186
StyI CCWWGG 2 cut(s) 91, 276
TaaI ACNGT 2 cut(s) 174, 286
TasI AATT 2 cut(s) 19, 103
TauI GCSGC 2 cut(s) 49, 67
TfiI GAWTC 1 cut(s) 79
TscAI CASTG 1 cut(s) 274
TseI GCWGC 1 cut(s) 49
TspMI CCCGGG 1 cut(s) 166
TspRI CASTG 1 cut(s) 274
Van91I CCANNNNNTGG 1 cut(s) 259
VpaK11BI GGWCC 3 cut(s) 95, 170, 190
XceI RCATGY 1 cut(s) 238
XmaI CCCGGG 1 cut(s) 166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.